Research output per year
Research output per year
Personal profile
Research
In current molecular cancer research, large scale profiling is typically performed using DNA and RNA measurements. However, proteins are the main machinery of living cells, and proteins undergo post-processing events, which impacts their functionality. Protein profiling could thus improve our understanding of cancer biology. We are using mass spectrometry for protein profiling, and most of our research is dedicated to improving computational methods for processing and analysis of mass spectrometry data, to enable highly resolved, comprehensive measurements. We apply the methods in different collaborative projects with other research groups.
Professional work
Coordinator wihin NBIS (National Bioinformatics Infrastructure). Infrastruture and support.
Group leader in computational proteomics
UKÄ subject classification
- Cancer and Oncology
- Bioinformatics (Computational Biology)
Keywords
- Proteomics
- Mass spectrometry
- Bioinformatics
- NBIS
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DIANA - algorithmic improvements for analysis of data-independent acquisition MS data.
Teleman, J., Röst, H., Rosenberger, G., Schmitt, U., Malmström, L., Malmström, J. & Levander, F., 2015, In: Bioinformatics. 31, 4, p. 555-562Research output: Contribution to journal › Article › peer-review
File387 Downloads (Pure) -
Is label-free LC-MS/MS ready for biomarker discovery?
Sandin, M., Chawade, A. & Levander, F., 2015, In: Proteomics Clinical Applications. 9, 3-4, p. 289-294Research output: Contribution to journal › Debate/Note/Editorial › peer-review
File353 Downloads (Pure) -
Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets
Chawade, A., Alexandersson, E. & Levander, F., 2014, In: Journal of Proteome Research. 13, 6, p. 3114-3120Research output: Contribution to journal › Article › peer-review
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An adaptive alignment algorithm for quality-controlled label-free LC-MS.
Sandin, M., Ali, A., Hansson, K., Månsson, O., Andreasson, E., Resjö, S. & Levander, F., 2013, In: Molecular & Cellular Proteomics. 12, 5, p. 1407-1420Research output: Contribution to journal › Article › peer-review
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Multimodel Pathway Enrichment Methods for Functional Evaluation of Expression Regulation.
Kirik, U., Cifani, P., Albrekt, A-S., Lindstedt, M., Heyden, A. & Levander, F., 2012, In: Journal of Proteome Research. 11, 5, p. 2955-2967Research output: Contribution to journal › Article › peer-review
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NILS study (Non-invasive diagnostic of lymph node status)
Ryden, L., Dihge, L., Bendahl, P., Zackrisson, S., Ohlsson, M., Dustler, M. & Levander, F.
Familjen Erling-Perssons Stiftelse, Bröstcancerförbundet, Sjöbergstiftelsen
2019/01/01 → 2027/12/31
Project: Research
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Plasma proteomics on EOC subgroups
Liljedahl, L., Sundfeldt, K., Levander, F., Siino, V. & Waldemarson, S.
2018/06/01 → 2020/06/30
Project: Research
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Antibody repertoires: Exploration of their role in allergic disease and facilitation of reliable analyses thereof
Thörnqvist, L., Ohlin, M., Levander, F., Lindstedt, M. & Greiff, L.
2017/08/21 → 2022/09/16
Project: Dissertation
Infrastructure
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National Bioinformatics Infrastructure Sweden
Dag Ahrén (Manager), Markus Ringnér (Manager), Fredrik Levander (Manager), Ashfaq Ali (Manager), Lokeshwaran Manoharan (Manager), Nikolay Oskolkov (Manager), Louella Judy Antonio Vasquez (Manager), Paul Theodor Pyl (Manager), Juliana Assis Geraldo (Manager) & Prasoon Agarwal (Manager)
Department of BiologyInfrastructure