Research output per year
Research output per year
Personal profile
Research
I am an analyst doing bioinformatics, data science and statistical analysis. I have a background in theoretical physics, PhD 2007, and I moved to Life Sciences in 2012 where I was doing medical and biological research. My range of interest includes genomics, transcriptomics, microbiome, ancient DNA, single cell, machine learning, image analysis, evolutionary science and many other things.
UKÄ subject classification
- Bioinformatics and Systems Biology
- Medical and Health Sciences
Keywords
- National Bioinformatics Infrastructure Sweden
- NBIS
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Micro-scale spatial preference and temporal cyclicity linked to foraging in harbour porpoises
Stedt, J., Wahlberg, M., Carlström, J., Nilsson, A., Amundin, M., Oskolkov, N. & Carlsson, P., 2023, In: Marine Ecology - Progress Series. 708, p. 143-161Research output: Contribution to journal › Article › peer-review
Open Access -
App-based COVID-19 syndromic surveillance and prediction of hospital admissions in COVID Symptom Study Sweden
Kennedy, B., Fitipaldi, H., Hammar, U., Maziarz, M., Tsereteli, N., Oskolkov, N., Varotsis, G., Franks, C. A., Nguyen, D., Spiliopoulos, L., Adami, H-O., Björk, J., Engblom, S., Fall, K., Grimby-Ekman, A., Litton, J-E., Martinell, M., Oudin, A., Sjöström, T., Timpka, T., & 16 others, 2022 Apr 21, In: Nature Communications. 13, 1, 12 p., 2110.Research output: Contribution to journal › Article › peer-review
Open Access -
Evolutionary consequences of genomic deletions and insertions in the woolly mammoth genome
van der Valk, T., Dehasque, M., Chacón-Duque, J. C., Oskolkov, N., Vartanyan, S., Heintzman, P. D., Pečnerová, P., Díez-del-Molino, D. & Dalén, L., 2022, In: iScience. 25, 8, 104826.Research output: Contribution to journal › Article › peer-review
Open Access -
High-throughput muscle fiber typing from RNA sequencing data
Oskolkov, N., Santel, M., Parikh, H. M., Ekström, O., Camp, G. J., Miyamoto-Mikami, E., Ström, K., Mir, B. A., Kryvokhyzha, D., Lehtovirta, M., Kobayashi, H., Kakigi, R., Naito, H., Eriksson, K. F., Nystedt, B., Fuku, N., Treutlein, B., Pääbo, S. & Hansson, O., 2022, In: Skeletal Muscle. 12, p. 1-9 16.Research output: Contribution to journal › Article › peer-review
Open Access -
Mercury–Selenium Accumulation Patterns in Muscle Tissue of Two Freshwater Fish Species, Eurasian Perch (Perca fluviatilis) and Vendace (Coregonus albula)
Regnell, O., Tesson, S. V. M., Oskolkov, N. & Nerentorp, M., 2022 Jul, In: Water, Air, and Soil Pollution. 233, 7, 236.Research output: Contribution to journal › Article › peer-review
Open Access
Projects
- 2 Active
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COMPUTE research school (continuation)
Aits, S., Hein, J., Davies, M. B., Birken, P., Oskolkov, N., Ullner, M., Smirnova, O., Doglioni, C., Topp, E. A., Andersson, E. & Lindh, L.
2021/01/01 → …
Project: Other
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Lysosomes in cell death - from molecular mechanisms to new treatment strategies
Aits, S., Ahmed, R., Kazemi Rashed, S. & Oskolkov, N.
Fabrikant Einar Willumsens Mindelegat, Stiftelsen Sigurd och Elsa Goljes Minne, The Royal Physiographic Society in Lund, Swedish Research Council, Crafoord Foundation, Hjärnfonden, Stiftelsen Längmanska kulturfonden, Thorsten och Elsa Segerfalks Stiftelse för främjande av medicinsk vetenskaplig forskning och utbildning
2017/01/01 → 2023/12/31
Project: Research
Infrastructure
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National Bioinformatics Infrastructure Sweden
Dag Ahrén (Manager), Markus Ringnér (Manager), Fredrik Levander (Manager), Ashfaq Ali (Manager), Lokeshwaran Manoharan (Manager), Nikolay Oskolkov (Manager), Louella Judy Antonio Vasquez (Manager), Paul Theodor Pyl (Manager), Juliana Assis Geraldo (Manager) & Prasoon Agarwal (Manager)
Department of BiologyInfrastructure