Personal profile
Free keywords
- Bioinformatics
- cell death
- lysosome
- Artificial Intelligence
- Machine Learning
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
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- 1 Similar Profiles
Collaborations the last five years
Research output
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Artificial intelligence approaches for mapping the nexus of biodiversity, climate change and human society
Ahmed, R., Aasa, C., Berntsson, P., Skafte, A., Kazemi Rashed, S., Klang, M., Barvesten, A., Olde, O., Lindholm, W., Lamarca Arrizabalaga, A., Nugues, P. & Aits, S., 2025 Oct 22.Research output: Contribution to conference › Abstract › peer-review
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An annotated high-content fluorescence microscopy dataset with EGFP-Galectin-3-stained cells and manually labelled outlines
Rashed, S. K., Arvidsson, M., Ahmed, R. & Aits, S., 2025 Feb, In: Data in Brief. 58, p. 1-9 111148.Research output: Contribution to journal › Article › peer-review
Open Access -
A Deep Learning Pipeline for Genome-Wide Imaging Screen Uncovering Cell Death Regulators
Kazemi Rashed, S., Esbo, K., Miari, M., Arvidsson, M. & Aits, S., 2025 Jan 10, 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, p. 7123Research output: Chapter in Book/Report/Conference proceeding › Paper in conference proceeding › peer-review
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An annotated high-content fluorescence microscopy dataset with 2 EGFP-Galectin-3-stained cells and manually labelled outlines
Kazemi Rashed, S., Arvidsson, M., Ahmed, R. & Aits, S., 2024 Jun 24, Zenodo.Research output: Working paper/Preprint › Preprint (in preprint archive)
Open Access -
EasyNER: A Customizable and Easy-to-Use Pipeline for Deep Learning- and Dictionary-based Named Entity Recognition from Medical Text [Software]
Ahmed, R., Aits, S., Kazemi Rashed, S., Nugues, P., Lamarca, A., Berntsson, P., Skafte, A., Klang, M., Olde, O., Barvesten, A. & Lindholm, W., 2024 Apr 2Research output: Non-textual form › Software
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Deep Learning for Lung Image Analysis
Kazemi Rashed, S. (Researcher), Augusto Silva, I. (Researcher), Wagner, D. (Researcher) & Aits, S. (Researcher)
2021/03/01 → …
Project: Research
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Using artificial intelligence and advanced computational tools to identify biological pathways, disease mechanisms and therapeutic opportunities
Kazemi Rashed, S. (Research student) & Aits, S. (Supervisor)
2020/04/01 → …
Project: Dissertation
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Artificial intelligence-based text mining for COVID-19 and other areas of medicine
Aits, S. (PI), Frid, J. (Researcher), Nugues, P. (CoI), Kazemi Rashed, S. (Research student), Klang, M. (Researcher) & Berg, J. (Researcher)
Knut and Alice Wallenberg Foundation
2020/01/20 → …
Project: Research
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Environmental toxins as cause of lysosomal damage-induced cell death in animals and humans
Aits, S. (PI), Kazemi Rashed, S. (Research student) & Ahmed, R. (Research student)
FORMAS, The Swedish Research Council for Environment, Agricultural Sciences and Spatial Planning
2020/01/01 → …
Project: Research
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Biomedical text mining for systems biology
Aits, S. (Researcher), Nugues, P. (PI), Frid, J. (Researcher), Klang, M. (Researcher), Ahmed, R. (Researcher) & Kazemi Rashed, S. (Researcher)
2019/04/01 → …
Project: Research
Activities
- 1 Participation in workshop/ seminar/ course
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NAC Young Resarchers Workshop 2023 (NAC week)
Wisbrant, J. (Organiser), Åström, K. (Host), Bäck, H. (Host), Åström, H. (Presenter), Heander, L. (Presenter), Engman, J. (Presenter), Stenseke, J. (Presenter), Stedtler, S. (Presenter), Springer, H. (Presenter), Wrisberg, A. (Presenter), Liu, Z. (Role not specified), Tagesson, A. (Presenter), Tjøstheim, T. A. (Presenter), Huang, B. (Presenter), Tegler, E. (Presenter), Ahmed, R. (Presenter) & Kazemi Rashed, S. (Presenter)
2023 Oct 24Activity: Participating in or organising an event › Participation in workshop/ seminar/ course
Prizes and Distinction
Datasets
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An annotated high-content fluorescence microscopy dataset with Hoechst 33342-stained nuclei and manually labelled outlines
Arvidsson, M. (Creator), Rashed, S. K. (Creator) & Aits, S. (Creator), Zenodo, 2022 Jun 17
Dataset
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An annotated high-content fluorescence microscopy dataset with EGFP-Galectin-3-stained cells and manually labelled outlines
Kazemi Rashed, S. (Creator), Arvidsson, M. (Creator), Ahmed, R. (Creator) & Aits, S. (Creator), Zenodo, 2021 Jun 24
Dataset
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Files and code for English dictionaries, gold and silver standard corpora for biomedical natural language processing related to SARS-CoV-2 and COVID-19
Kazemi Rashed, S. (Creator), Rafsan Ahmed (Creator), Frid, J. (Creator) & Sonja Aits (Creator), Zenodo, 2025 Jun 12
Dataset