Analysing large-scale microscopy datasets with AI-based approaches

Project: Research

In this project we are developing AI-based approaches for analysing large datasets with microscopy images generated by high-content imaging screens.

Status	Active
Effective start/end date	2018/11/28 → …

Lund University (lead)
National Bioinformatics Infrastructure Sweden (NBIS), SciLifeLab (Project partner)
Science for Life Laboratory (SciLifeLab)

A Deep Learning Pipeline for Genome-Wide Imaging Screen Uncovering Cell Death Regulators
Kazemi Rashed, S., Esbo, K., Miari, M., Arvidsson, M. & Aits, S., 2025 Jan 10, 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, p. 7123
Research output: Chapter in Book/Report/Conference proceeding › Paper in conference proceeding › peer-review
An annotated high-content fluorescence microscopy dataset with 2 EGFP-Galectin-3-stained cells and manually labelled outlines
Kazemi Rashed, S., Arvidsson, M., Ahmed, R. & Aits, S., 2024 Jun 24, Zenodo.
Research output: Working paper/Preprint › Preprint (in preprint archive)

Open Access
An annotated high-content fluorescence microscopy dataset with Hoechst 33342-stained nuclei and manually labelled outlines
Arvidsson, M., Rashed, S. K. & Aits, S., 2023 Feb, In: Data in Brief. 46, 108769.
Research output: Contribution to journal › Article › peer-review

Open Access

Using artificial intelligence and advanced computational tools to identify biological pathways, disease mechanisms and therapeutic opportunities
Kazemi Rashed, S. (Research student) & Aits, S. (Supervisor)
2020/04/01 → …
Project: Dissertation
Environmental toxins as cause of lysosomal damage-induced cell death in animals and humans
Aits, S. (PI), Kazemi Rashed, S. (Research student) & Ahmed, R. (Research student)
FORMAS, The Swedish Research Council for Environment, Agricultural Sciences and Spatial Planning
2020/01/01 → …
Project: Research
AI Lund: Lund University AI Research
Åström, K. (Project coordinator), Malec, J. (Project coordinator), Larsson, S. (Project coordinator), Ohlsson, M. (Project coordinator), Balkenius, C. (Project coordinator), Dutceac Segesten, A. (Project coordinator), Haider, J. (Project coordinator), Willim, R. (Project coordinator), Ledendal, J. (Project coordinator), Aits, S. (Project coordinator), Hedlund, M. (Researcher), Wisbrant, J. (Project communication officer), Heiberg, E. (PI), Topp, E. A. (Researcher), Janneck, J. (Researcher), Klang, M. (Researcher), Brinck, I. (Researcher), Sundin, O. (Researcher), Westin, E. (Administrator), Blom Lussi, E. (Project coordinator) & Axhamn, J. (Project coordinator)
2018/01/01 → …
Project: Network

Fråga Lund - segment on ChatGPT and AI
Aits, S. (Role not specified)
2023 Oct 23
Activity: Other › Media participation

Project Details