Project Details
| Status | Active |
|---|---|
| Effective start/end date | 2020/01/01 → … |
Funding
- FORMAS, The Swedish Research Council for Environment, Agricultural Sciences and Spatial Planning
Free keywords
- cell death
- lysosomes
- biodiversity
- environmental health
- environmental science
- sustainability
- toxins
- deep learning
- computer vision
- natural language processing
- high-content imaging
- neural networks
- artificial intelligence
- tex mining
Research output
-
Mapping disease-environment connections reported in scientific literature at scale with EasyNER
Aasa, C., Boyd, E. & Aits, S., 2025 Dec 2.Research output: Contribution to conference › Paper, not in proceeding › peer-review
Open Access -
A Deep Learning Pipeline for Genome-Wide Imaging Screen Uncovering Cell Death Regulators
Kazemi Rashed, S., Esbo, K., Miari, M., Arvidsson, M. & Aits, S., 2025 Jan 10, 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, p. 7123Research output: Chapter in Book/Report/Conference proceeding › Paper in conference proceeding › peer-review
-
The Cell Death Census 2024
Miari, M., Regnell, E. & Aits, S., 2024 Apr 8, bioRxiv.Research output: Working paper/Preprint › Preprint (in preprint archive)
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Using artificial intelligence and advanced computational tools to identify biological pathways, disease mechanisms and therapeutic opportunities
Kazemi Rashed, S. (Research student) & Aits, S. (Supervisor)
2020/04/01 → …
Project: Dissertation
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Biomedical text mining for systems biology
Aits, S. (Researcher), Nugues, P. (PI), Frid, J. (Researcher), Klang, M. (Researcher), Ahmed, R. (Researcher) & Kazemi Rashed, S. (Researcher)
2019/04/01 → …
Project: Research
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Analysing large-scale microscopy datasets with AI-based approaches
Aits, S. (PI), Åström, K. (PI), Maad Sasane, S. (PI), Oskolkov, N. (Researcher), Simpson, K. (Researcher), Kazemi Rashed, S. (Research student) & Lim, J. C. (Research student)
2018/11/28 → …
Project: Research
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AI in research: ChatGPT and more
Aits, S. (Role not specified)
2023 Aug 22Activity: Talk or presentation › Invited talk
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SRA workshop series: Future-oriented methodologies with focus on artificial intelligence (AI) related to SDG´s
Wittbom, C. (Organiser), Avery, H. (Organiser), Smirnova, O. (Host), Berntsson, P. (Host), Aits, S. (Invited speaker), Paulsson, K. M. (Invited speaker) & Wihlborg, A.-K. (Session chair)
2021 May 31Activity: Participating in or organising an event › Organisation of workshop/ seminar/ course
Datasets
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An annotated high-content fluorescence microscopy dataset with Hoechst 33342-stained nuclei and manually labelled outlines
Arvidsson, M. (Creator), Rashed, S. K. (Creator) & Aits, S. (Creator), Zenodo, 2022 Jun 17
Dataset