Accurate Backbone 13C and 15N Chemical Shift Tensors in Galectin-3 Determined by MAS NMR and QM/MM: Details of Structure and Environment Matter

Jodi Kraus, Rupal Gupta, Manman Lu, Angela M. Gronenborn, Mikael Akke, Tatyana Polenova

Research output: Contribution to journalArticlepeer-review

Abstract

Chemical shift tensors obtained from solid-state NMR spectroscopy are very sensitive reporters of structure and dynamics in proteins. While accurate 13C and 15N chemical shift tensors are accessible by magic angle spinning (MAS) NMR, their quantum mechanical calculations remain challenging, particularly for 15N atoms. Here we compare experimentally determined backbone 13Cα and 15NH chemical shift tensors by MAS NMR with hybrid quantum mechanics/molecular mechanics/molecular dynamics (MD-QM/MM) calculations for the carbohydrate-binding domain of galectin-3. Excellent agreement between experimental and computed 15NH chemical shift anisotropy values was obtained using the Amber ff15ipq force field when solvent dynamics was taken into account in the calculation. Our results establish important benchmark conditions for improving the accuracy of chemical shift calculations in proteins and may aid in the validation of protein structure models derived by MAS NMR.

Original languageEnglish
Pages (from-to)1436-1443
Number of pages8
JournalChemPhysChem
Volume21
Issue number13
Early online date2020
DOIs
Publication statusPublished - 2020 Jul 2

Subject classification (UKÄ)

  • Theoretical Chemistry (including Computational Chemistry)

Free keywords

  • Chemical shift anisotropy
  • microcrystalline protein
  • QM/MM
  • recoupling
  • solid-state NMR

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