Abstract
Multiple myeloma (MM) is a blood malignancy originating from plasma cells. First-degree relatives of patients with MM have two- to four-fold higher risk of MM. However, the molecular basis remains largely unknown. This Ph.D. project aims to identify novel DNA sequence variants predisposing to MM through genome-wide association studies (GWAS) and, subsequently, characterize identified variants functionally.
Article I describes a systematic study where we screened for causal gene-regulatory variants at 21 MM risk loci. Article II describes a Nordic GWAS identifying the SOHLH2 (13q13.3) as a novel MM risk locus. Article III describes a novel international meta-analysis of GWAS data totalling 10 906 cases and 366 221 controls, identifying twelve new risk variants for MM accounted for by nine loci: 5q35.2 CPEB4, 6p22.2 BTN3A2, 9q21.33 DAPK1, 10q24.33 STN1, 10q25.2 MXI1, 19p13.3 NFIC, 21q11.2, SAMSN1 and a rare variant at 13q13.1 BRCA2. Finally, in Article IV, we explore the possibility of identifying transcription factors that mediate allele-specific gene-regulatory effects through combined use of CRISPR/Cas9 screening and epistasis analysis of gene expression data.
The work presented in this thesis provides new insight into the mechanisms underlying genetic predisposition for multiple myeloma.
Article I describes a systematic study where we screened for causal gene-regulatory variants at 21 MM risk loci. Article II describes a Nordic GWAS identifying the SOHLH2 (13q13.3) as a novel MM risk locus. Article III describes a novel international meta-analysis of GWAS data totalling 10 906 cases and 366 221 controls, identifying twelve new risk variants for MM accounted for by nine loci: 5q35.2 CPEB4, 6p22.2 BTN3A2, 9q21.33 DAPK1, 10q24.33 STN1, 10q25.2 MXI1, 19p13.3 NFIC, 21q11.2, SAMSN1 and a rare variant at 13q13.1 BRCA2. Finally, in Article IV, we explore the possibility of identifying transcription factors that mediate allele-specific gene-regulatory effects through combined use of CRISPR/Cas9 screening and epistasis analysis of gene expression data.
The work presented in this thesis provides new insight into the mechanisms underlying genetic predisposition for multiple myeloma.
| Original language | English |
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| Qualification | Doctor |
| Awarding Institution |
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| Supervisors/Advisors |
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| Award date | 2022 Oct 21 |
| Place of Publication | Lund |
| Publisher | |
| ISBN (Print) | 978-91-8021-294-6 |
| Publication status | Published - 2022 |
Bibliographical note
Defence detailsDate: 2022-10-21
Time: 13:00
Place: Belfragesalen, BMC D15, Klinikgatan 32 i Lund. Join by Zoom: https://lu-se.zoom.us/j/66575729066
External reviewer(s)
Name: Trynka, Gosia
Title: Head of Immune Genomics Group, Wellcome Sanger Institute and Director of Experimental Sciences, Open Targets
Affiliation: Wellcome Sanger Institute, Open Targets
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UN SDGs
This output contributes to the following UN Sustainable Development Goals (SDGs)
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SDG 3 Good Health and Well-being
Subject classification (UKÄ)
- Medical Genetics and Genomics (including Gene Therapy)
Free keywords
- GWAS
- multiple myeloma
- CRISPR/Cas9
- cancer genetics
- functional characterization
- Germline variants
Fingerprint
Dive into the research topics of 'Genetic predisposition for Multiple Myeloma. Identification and functional characterization of risk variants'. Together they form a unique fingerprint.Research output
- 2 Article
-
Functional dissection of inherited non-coding variation influencing multiple myeloma risk
Ajore, R., Niroula, A., Pertesi, M., Cafaro, C., Thodberg, M., Went, M., Bao, E. L., Duran-Lozano, L., Lopez de Lapuente Portilla, A., Olafsdottir, T., Ugidos-Damboriena, N., Magnusson, O., Samur, M., Lareau, C. A., Halldorsson, G. H., Thorleifsson, G., Norddahl, G. L., Gunnarsdottir, K., Försti, A. & Goldschmidt, H. & 16 others, , 2022, In: Nature Communications. 13, 1, 151.Research output: Contribution to journal › Article › peer-review
Open Access -
Germline variants at SOHLH2 influence multiple myeloma risk
Duran-Lozano, L., Thorleifsson, G., Lopez de Lapuente Portilla, A., Niroula, A., Went, M., Thodberg, M., Pertesi, M., Ajore, R., Cafaro, C., Olason, P. I., Stefansdottir, L., Bragi Walters, G., Halldorsson, G. H., Turesson, I., Kaiser, M. F., Weinhold, N., Abildgaard, N., Andersen, N. F., Mellqvist, U.-H. & Waage, A. & 7 others, , 2021 Apr 19, In: Blood Cancer Journal. 11, 4, 76.Research output: Contribution to journal › Article › peer-review
Open Access
Projects
- 1 Finished
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Genetic predisposition to Multiple Myeloma
Duran Lozano, L. (Research student), Nilsson, B. (Supervisor) & Lopez de Lapuente Portilla, A. (Supervisor)
2018/03/01 → 2022/10/21
Project: Dissertation
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