Abstract
A "genome order index," defined as S=a(2)+c(2)+t(2)+g(2), where a, c, t, and g are the nucleotide frequencies of A, C, T, and G, respectively, was used to suggest that there exist genome-specific constraints on nucleotide composition. We show that the "evidence" for constraint, S<1/3, is in fact a mathematical property that is always true regardless of data. Moreover, we show that S is strictly equivalent to and derivable from the Shannon H-function and has no advantage over it.
Original language | English |
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Pages (from-to) | 147 |
Journal | Computational biology and chemistry |
Volume | 32 |
Issue number | 2 |
DOIs | |
Publication status | Published - 2008 Apr |
Externally published | Yes |
Free keywords
- Base Composition
- Base Sequence
- Genome
- Sequence Analysis, DNA