MuscleAtlasExplorer: a web service for studying gene expression in human skeletal muscle

Olof Asplund, Johan Rung, Leif Groop, Rashmi Prasad B, Ola Hansson

Research output: Contribution to journalArticlepeer-review

Abstract

MuscleAtlasExplorer is a freely available web application that allows for the exploration of gene expression data from human skeletal muscle. It draws from an extensive publicly available dataset of 1654 skeletal muscle expression microarray samples. Detailed, manually curated, patient phenotype data, with information such as age, sex, BMI and disease status, are combined with skeletal muscle gene expression to provide insights into gene function in skeletal muscle. It aims to facilitate easy exploration of the data using powerful data visualization functions, while allowing for sample selection, in-depth inspection and further analysis using external tools. Availability: MuscleAtlasExplorer is available at https://mae.crc.med.lu.se/mae2 (username 'muscle' and password 'explorer' pre-publication).

Original languageEnglish
Article numberbaaa111
JournalDatabase: the journal of biological databases and curation
Volume2020
DOIs
Publication statusPublished - 2020 Dec 18

Subject classification (UKÄ)

  • Bioinformatics and Systems Biology
  • Medical Genetics

Free keywords

  • database tool

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