The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing.

Patrick J Keeling; Fabien Burki; Heather M Wilcox; Bassem Allam; Eric E Allen; Linda A Amaral-Zettler; E Virginia Armbrust; John M Archibald; Arvind K Bharti; Callum J Bell; Bank Beszteri; Kay D Bidle; Connor T Cameron; Lisa Campbell; David A Caron; Rose Ann Cattolico; Jackie L Collier; Kathryn Coyne; Simon K Davy; Phillipe Deschamps; Sonya T Dyhrman; Bente Edvardsen; Ruth D Gates; Christopher J Gobler; Spencer J Greenwood; Stephanie M Guida; Jennifer L Jacobi; Kjetill S Jakobsen; Erick R James; Bethany Jenkins; Uwe John; Matthew D Johnson; Andrew R Juhl; Anja Kamp; Laura A Katz; Ronald Kiene; Alexander Kudryavtsev; Brian S Leander; Senjie Lin; Connie Lovejoy; Denis Lynn; Adrian Marchetti; George McManus; Aurora M Nedelcu; Susanne Menden-Deuer; Cristina Miceli; Thomas Mock; Marina Montresor; Mary Ann Moran; Shauna Murray; Govind Nadathur; Satoshi Nagai; Peter B Ngam; Brian Palenik; Jan Pawlowski; Giulio Petroni; Gwenael Piganeau; Matthew C Posewitz; Karin Rengefors; Giovanna Romano; Mary E Rumpho; Tatiana Rynearson; Kelly B Schilling; Declan C Schroeder; Alastair G B Simpson; Claudio H Slamovits; David R Smith; G Jason Smith; Sarah R Smith; Heidi M Sosik; Peter Stief; Edward Theriot; Scott N Twary; Pooja E Umale; Daniel Vaulot; Boris Wawrik; Glen L Wheeler; William H Wilson; Yan Xu; Adriana Zingone; Alexandra Z Worden

doi:10.1371/journal.pbio.1001889

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing.

Patrick J Keeling, Fabien Burki, Heather M Wilcox, Bassem Allam, Eric E Allen, Linda A Amaral-Zettler, E Virginia Armbrust, John M Archibald, Arvind K Bharti, Callum J Bell, Bank Beszteri, Kay D Bidle, Connor T Cameron, Lisa Campbell, David A Caron, Rose Ann Cattolico, Jackie L Collier, Kathryn Coyne, Simon K Davy, Phillipe DeschampsSonya T Dyhrman, Bente Edvardsen, Ruth D Gates, Christopher J Gobler, Spencer J Greenwood, Stephanie M Guida, Jennifer L Jacobi, Kjetill S Jakobsen, Erick R James, Bethany Jenkins, Uwe John, Matthew D Johnson, Andrew R Juhl, Anja Kamp, Laura A Katz, Ronald Kiene, Alexander Kudryavtsev, Brian S Leander, Senjie Lin, Connie Lovejoy, Denis Lynn, Adrian Marchetti, George McManus, Aurora M Nedelcu, Susanne Menden-Deuer, Cristina Miceli, Thomas Mock, Marina Montresor, Mary Ann Moran, Shauna Murray, Govind Nadathur, Satoshi Nagai, Peter B Ngam, Brian Palenik, Jan Pawlowski, Giulio Petroni, Gwenael Piganeau, Matthew C Posewitz, Karin Rengefors, Giovanna Romano, Mary E Rumpho, Tatiana Rynearson, Kelly B Schilling, Declan C Schroeder, Alastair G B Simpson, Claudio H Slamovits, David R Smith, G Jason Smith, Sarah R Smith, Heidi M Sosik, Peter Stief, Edward Theriot, Scott N Twary, Pooja E Umale, Daniel Vaulot, Boris Wawrik, Glen L Wheeler, William H Wilson, Yan Xu, Adriana Zingone, Alexandra Z Worden

Aquatic Ecology

Research output: Contribution to journal › Debate/Note/Editorial › peer-review

Abstract

Current sampling of genomic sequence data from eukaryotes is relatively poor, biased, and inadequate to address important questions about their biology, evolution, and ecology; this Community Page describes a resource of 700 transcriptomes from marine microbial eukaryotes to help understand their role in the world's oceans.

Original language	English
Article number	e1001889
Journal	PLoS Biology
Volume	12
Issue number	6
DOIs	https://doi.org/10.1371/journal.pbio.1001889
Publication status	Published - 2014

Subject classification (UKÄ)

Biological Sciences

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

Access to Document

10.1371/journal.pbio.1001889

Cite this

Keeling, P. J., Burki, F., Wilcox, H. M., Allam, B., Allen, E. E., Amaral-Zettler, L. A., Armbrust, E. V., Archibald, J. M., Bharti, A. K., Bell, C. J., Beszteri, B., Bidle, K. D., Cameron, C. T., Campbell, L., Caron, D. A., Cattolico, R. A., Collier, J. L., Coyne, K., Davy, S. K., ... Worden, A. Z. (2014). The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing. PLoS Biology, 12(6), Article e1001889. https://doi.org/10.1371/journal.pbio.1001889

@article{656d7dff975b4098b88c58ba0d07df04,

title = "The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing.",

abstract = "Current sampling of genomic sequence data from eukaryotes is relatively poor, biased, and inadequate to address important questions about their biology, evolution, and ecology; this Community Page describes a resource of 700 transcriptomes from marine microbial eukaryotes to help understand their role in the world's oceans.",

author = "Keeling, {Patrick J} and Fabien Burki and Wilcox, {Heather M} and Bassem Allam and Allen, {Eric E} and Amaral-Zettler, {Linda A} and Armbrust, {E Virginia} and Archibald, {John M} and Bharti, {Arvind K} and Bell, {Callum J} and Bank Beszteri and Bidle, {Kay D} and Cameron, {Connor T} and Lisa Campbell and Caron, {David A} and Cattolico, {Rose Ann} and Collier, {Jackie L} and Kathryn Coyne and Davy, {Simon K} and Phillipe Deschamps and Dyhrman, {Sonya T} and Bente Edvardsen and Gates, {Ruth D} and Gobler, {Christopher J} and Greenwood, {Spencer J} and Guida, {Stephanie M} and Jacobi, {Jennifer L} and Jakobsen, {Kjetill S} and James, {Erick R} and Bethany Jenkins and Uwe John and Johnson, {Matthew D} and Juhl, {Andrew R} and Anja Kamp and Katz, {Laura A} and Ronald Kiene and Alexander Kudryavtsev and Leander, {Brian S} and Senjie Lin and Connie Lovejoy and Denis Lynn and Adrian Marchetti and George McManus and Nedelcu, {Aurora M} and Susanne Menden-Deuer and Cristina Miceli and Thomas Mock and Marina Montresor and Moran, {Mary Ann} and Shauna Murray and Govind Nadathur and Satoshi Nagai and Ngam, {Peter B} and Brian Palenik and Jan Pawlowski and Giulio Petroni and Gwenael Piganeau and Posewitz, {Matthew C} and Karin Rengefors and Giovanna Romano and Rumpho, {Mary E} and Tatiana Rynearson and Schilling, {Kelly B} and Schroeder, {Declan C} and Simpson, {Alastair G B} and Slamovits, {Claudio H} and Smith, {David R} and Smith, {G Jason} and Smith, {Sarah R} and Sosik, {Heidi M} and Peter Stief and Edward Theriot and Twary, {Scott N} and Umale, {Pooja E} and Daniel Vaulot and Boris Wawrik and Wheeler, {Glen L} and Wilson, {William H} and Yan Xu and Adriana Zingone and Worden, {Alexandra Z}",

year = "2014",

doi = "10.1371/journal.pbio.1001889",

language = "English",

volume = "12",

journal = "PLoS Biology",

issn = "1545-7885",

publisher = "Public Library of Science (PLoS)",

number = "6",

}

Keeling, PJ, Burki, F, Wilcox, HM, Allam, B, Allen, EE, Amaral-Zettler, LA, Armbrust, EV, Archibald, JM, Bharti, AK, Bell, CJ, Beszteri, B, Bidle, KD, Cameron, CT, Campbell, L, Caron, DA, Cattolico, RA, Collier, JL, Coyne, K, Davy, SK, Deschamps, P, Dyhrman, ST, Edvardsen, B, Gates, RD, Gobler, CJ, Greenwood, SJ, Guida, SM, Jacobi, JL, Jakobsen, KS, James, ER, Jenkins, B, John, U, Johnson, MD, Juhl, AR, Kamp, A, Katz, LA, Kiene, R, Kudryavtsev, A, Leander, BS, Lin, S, Lovejoy, C, Lynn, D, Marchetti, A, McManus, G, Nedelcu, AM, Menden-Deuer, S, Miceli, C, Mock, T, Montresor, M, Moran, MA, Murray, S, Nadathur, G, Nagai, S, Ngam, PB, Palenik, B, Pawlowski, J, Petroni, G, Piganeau, G, Posewitz, MC, Rengefors, K, Romano, G, Rumpho, ME, Rynearson, T, Schilling, KB, Schroeder, DC, Simpson, AGB, Slamovits, CH, Smith, DR, Smith, GJ, Smith, SR, Sosik, HM, Stief, P, Theriot, E, Twary, SN, Umale, PE, Vaulot, D, Wawrik, B, Wheeler, GL, Wilson, WH, Xu, Y, Zingone, A & Worden, AZ 2014, 'The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing.', PLoS Biology, vol. 12, no. 6, e1001889. https://doi.org/10.1371/journal.pbio.1001889

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing. / Keeling, Patrick J; Burki, Fabien; Wilcox, Heather M et al.
In: PLoS Biology, Vol. 12, No. 6, e1001889, 2014.

Research output: Contribution to journal › Debate/Note/Editorial › peer-review

TY - JOUR

T1 - The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing.

AU - Keeling, Patrick J

AU - Burki, Fabien

AU - Wilcox, Heather M

AU - Allam, Bassem

AU - Allen, Eric E

AU - Amaral-Zettler, Linda A

AU - Armbrust, E Virginia

AU - Archibald, John M

AU - Bharti, Arvind K

AU - Bell, Callum J

AU - Beszteri, Bank

AU - Bidle, Kay D

AU - Cameron, Connor T

AU - Campbell, Lisa

AU - Caron, David A

AU - Cattolico, Rose Ann

AU - Collier, Jackie L

AU - Coyne, Kathryn

AU - Davy, Simon K

AU - Deschamps, Phillipe

AU - Dyhrman, Sonya T

AU - Edvardsen, Bente

AU - Gates, Ruth D

AU - Gobler, Christopher J

AU - Greenwood, Spencer J

AU - Guida, Stephanie M

AU - Jacobi, Jennifer L

AU - Jakobsen, Kjetill S

AU - James, Erick R

AU - Jenkins, Bethany

AU - John, Uwe

AU - Johnson, Matthew D

AU - Juhl, Andrew R

AU - Kamp, Anja

AU - Katz, Laura A

AU - Kiene, Ronald

AU - Kudryavtsev, Alexander

AU - Leander, Brian S

AU - Lin, Senjie

AU - Lovejoy, Connie

AU - Lynn, Denis

AU - Marchetti, Adrian

AU - McManus, George

AU - Nedelcu, Aurora M

AU - Menden-Deuer, Susanne

AU - Miceli, Cristina

AU - Mock, Thomas

AU - Montresor, Marina

AU - Moran, Mary Ann

AU - Murray, Shauna

AU - Nadathur, Govind

AU - Nagai, Satoshi

AU - Ngam, Peter B

AU - Palenik, Brian

AU - Pawlowski, Jan

AU - Petroni, Giulio

AU - Piganeau, Gwenael

AU - Posewitz, Matthew C

AU - Rengefors, Karin

AU - Romano, Giovanna

AU - Rumpho, Mary E

AU - Rynearson, Tatiana

AU - Schilling, Kelly B

AU - Schroeder, Declan C

AU - Simpson, Alastair G B

AU - Slamovits, Claudio H

AU - Smith, David R

AU - Smith, G Jason

AU - Smith, Sarah R

AU - Sosik, Heidi M

AU - Stief, Peter

AU - Theriot, Edward

AU - Twary, Scott N

AU - Umale, Pooja E

AU - Vaulot, Daniel

AU - Wawrik, Boris

AU - Wheeler, Glen L

AU - Wilson, William H

AU - Xu, Yan

AU - Zingone, Adriana

AU - Worden, Alexandra Z

PY - 2014

Y1 - 2014

N2 - Current sampling of genomic sequence data from eukaryotes is relatively poor, biased, and inadequate to address important questions about their biology, evolution, and ecology; this Community Page describes a resource of 700 transcriptomes from marine microbial eukaryotes to help understand their role in the world's oceans.

AB - Current sampling of genomic sequence data from eukaryotes is relatively poor, biased, and inadequate to address important questions about their biology, evolution, and ecology; this Community Page describes a resource of 700 transcriptomes from marine microbial eukaryotes to help understand their role in the world's oceans.

U2 - 10.1371/journal.pbio.1001889

DO - 10.1371/journal.pbio.1001889

M3 - Debate/Note/Editorial

C2 - 24959919

SN - 1545-7885

VL - 12

JO - PLoS Biology

JF - PLoS Biology

IS - 6

M1 - e1001889

ER -

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing.

Abstract

Subject classification (UKÄ)

UN SDGs

Access to Document

Fingerprint

Cite this