BMC Bioinformatics, 1471-2105

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  1. 2019
  2. PTPD: Predicting therapeutic peptides by deep learning and word2vec

    Chuanyan Wu, Rui Gao, Yusen Zhang & Yang De Marinis, 2019 Sep 6, In : BMC Bioinformatics. 20, 1, 456.

    Research output: Contribution to journalArticle

  3. Greedy de novo motif discovery to construct motif repositories for bacterial proteomes

    Hamed Khakzad, Johan Malmström & Lars Malmström, 2019 Apr 18, In : BMC Bioinformatics. 20, Suppl 4, 141.

    Research output: Contribution to journalArticle

  4. 2018
  5. Representativeness of variation benchmark datasets

    Gerard C P Schaafsma & Mauno Vihinen, 2018 Nov 29, In : BMC Bioinformatics. 19, 1, p. 461

    Research output: Contribution to journalArticle

  6. 2017
  7. PON-SC - program for identifying steric clashes caused by amino acid substitutions

    Jelena Čalyševa & Mauno Vihinen, 2017 Nov 29, In : BMC Bioinformatics. 18, 1, 531.

    Research output: Contribution to journalArticle

  8. 2016
  9. TopHat-Recondition: A post-processor for TopHat unmapped reads

    Christian Brueffer & Lao H. Saal, 2016 May 4, In : BMC Bioinformatics. 17, 1, 199.

    Research output: Contribution to journalArticle

  10. BayesFlow: latent modeling of flow cytometry cell populations.

    Kerstin Johnsson, Jonas Wallin & Magnus Fontes, 2016, In : BMC Bioinformatics. 17, 1, 25.

    Research output: Contribution to journalArticle

  11. 2015
  12. MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics

    Sandeep Kushwaha, Lokeshwaran Manoharan, Tejashwari Meerupati, Katarina Hedlund & Dag Ahrén, 2015, In : BMC Bioinformatics. 16, 65.

    Research output: Contribution to journalArticle

  13. 2014
  14. Gene expression and nucleotide composition are associated with genic methylation level in Oryza sativa

    Eran Elhaik, Matteo Pellegrini & Tatiana V Tatarinova, 2014 Jan 21, In : BMC Bioinformatics. 15, 7 p., 23.

    Research output: Contribution to journalArticle

  15. 2012
  16. VarioML framework for comprehensive variation data representation and exchange

    Myles Byrne, Ivo F. A. C. Fokkema, Owen Lancaster, Tomasz Adamusiak, Anni Ahonen-Bishopp, David Atlan, Christophe Beroud, Michael Cornell, Raymond Dalgleish, Andrew Devereau, George P. Patrinos, Morris A. Swertz, Peter E. M. Taschner, Gudmundur A. Thorisson, Mauno Vihinen, Anthony J. Brookes & Juha Muilu, 2012, In : BMC Bioinformatics. 13, 254

    Research output: Contribution to journalArticle

  17. 2011
  18. Identification of conserved gene clusters in multiple genomes based on synteny and homology

    Anasua Sarkar, Hayssam Soueidan & Macha Nikolski, 2011 Oct 5, In : BMC Bioinformatics. 12, Suppl. 9, S18.

    Research output: Contribution to journalArticle

  19. The projection score - an evaluation criterion for variable subset selection in PCA visualization

    Magnus Fontes & Charlotte Soneson, 2011, In : BMC Bioinformatics. 12, 307.

    Research output: Contribution to journalArticle

  20. 2010
  21. Detecting microRNA activity from gene expression data

    Stephen F. Madden, Susan B. Carpenter, Ian B. Jeffery, Harry Björkbacka, Katherine A. Fitzgerald, Luke A. O'Neill & Desmond G. Higgins, 2010, In : BMC Bioinformatics. 11

    Research output: Contribution to journalArticle

  22. Integrative analysis of gene expression and copy number alterations using canonical correlation analysis

    Charlotte Soneson, Henrik Lilljebjörn, Thoas Fioretos & Magnus Fontes, 2010, In : BMC Bioinformatics. 11, 191, p. 1-20

    Research output: Contribution to journalArticle

  23. 2009
  24. BASE--2nd generation software for microarray data management and analysis.

    Johan Vallon-Christersson, Nicklas Nordborg, Martin Svensson & Jari Häkkinen, 2009, In : BMC Bioinformatics. 10, Oct 12, 330.

    Research output: Contribution to journalArticle

  25. How to find simple and accurate rules for viral protease cleavage specificities

    Thorsteinn Rognvaldsson, Terence A. Etchells, Liwen You, Daniel Garwicz, Ian Jarman & Paulo J. G. Lisboa, 2009, In : BMC Bioinformatics. 10

    Research output: Contribution to journalArticle

  26. 2008
  27. PseudoGeneQuest - service for identification of different pseudogene types in the human genome.

    Csaba Ortutay & Mauno Vihinen, 2008, In : BMC Bioinformatics. 9, 299.

    Research output: Contribution to journalArticle

  28. 2006
  29. A statistical score for assessing the quality of multiple sequence alignments.

    Virpi Ahola, Tero Aittokallio, Mauno Vihinen & Esa Uusipaikka, 2006, In : BMC Bioinformatics. 7, 484.

    Research output: Contribution to journalArticle

  30. Improving missing value imputation of microarray data by using spot quality weights

    Peter Johansson & Jari Häkkinen, 2006, In : BMC Bioinformatics. 7, 306.

    Research output: Contribution to journalArticle

  31. Microarray image analysis: background estimation using quantile and morphological filters

    Anders Bengtsson & Henrik Bengtsson, 2006, In : BMC Bioinformatics. 7

    Research output: Contribution to journalArticle

  32. 2005
  33. Dynamic covariation between gene expression and proteome characteristics.

    Mansour Taghavi Azar Sharabiani, Markku Siermala, Tommi O Lehtinen & Mauno Vihinen, 2005, In : BMC Bioinformatics. 6, 215.

    Research output: Contribution to journalArticle

  34. Signal transduction pathway profiling of individual tumor samples

    Thomas Breslin, Morten Krogh, Carsten Peterson & Carl Troein, 2005, In : BMC Bioinformatics. 6, 163

    Research output: Contribution to journalArticle

  35. 2004
  36. BioBuilder as a database development and functional annotation platform for proteins

    J Daniel Navarro, Naveen Talreja, Suraj Peri, B M Vrushabendra, BP Rashmi, N Padma, Vineeth Surendranath, Chandra Kiran Jonnalagadda, P S Kousthub, Nandan Deshpande, K Shanker & Akhilesh Pandey, 2004 Apr 20, In : BMC Bioinformatics. 5, 43.

    Research output: Contribution to journalArticle

  37. Comparing Functional Annotation Analyses with Catmap

    Thomas Breslin, Patrik Edén & Morten Krogh, 2004, In : BMC Bioinformatics. 5, p. 193

    Research output: Contribution to journalArticle

  38. galaxieEST: addressing EST identity through automated phylogenetic analysis

    R H Nilsson, Balaji Rajashekar, K H Larsson & B M Ursing, 2004, In : BMC Bioinformatics. 5

    Research output: Contribution to journalArticle

  39. Incidence of "quasi-ditags" in catalogs generated by Serial Analysis of Gene Expression (SAGE)

    Sergey Anisimov & AA Sharov, 2004, In : BMC Bioinformatics. 5

    Research output: Contribution to journalArticle

  40. Multiclass discovery in array data

    Yingchun Liu & Markus Ringnér, 2004, In : BMC Bioinformatics. 5, 70.

    Research output: Contribution to journalArticle

  41. 2003
  42. Probabilistic estimation of microarray data reliability and underlying gene expression

    Sven Bilke, Thomas Breslin & Mikael Sigvardsson, 2003, In : BMC Bioinformatics. 4, 40

    Research output: Contribution to journalArticle