BMC Bioinformatics, 1471-2105

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  1. 2019
  2. PTPD: Predicting therapeutic peptides by deep learning and word2vec

    Chuanyan Wu, Gao, R., Zhang, Y. & Yang De Marinis, 2019 Sep 6, In : BMC Bioinformatics. 20, 1, 456.

    Research output: Contribution to journalArticle

  3. Greedy de novo motif discovery to construct motif repositories for bacterial proteomes

    Khakzad, H., Johan Malmström & Lars Malmström, 2019 Apr 18, In : BMC Bioinformatics. 20, Suppl 4, 141.

    Research output: Contribution to journalArticle

  4. 2018
  5. Representativeness of variation benchmark datasets

    Gerard C P Schaafsma & Mauno Vihinen, 2018 Nov 29, In : BMC Bioinformatics. 19, 1, p. 461

    Research output: Contribution to journalArticle

  6. 2017
  7. PON-SC - program for identifying steric clashes caused by amino acid substitutions

    Čalyševa, J. & Mauno Vihinen, 2017 Nov 29, In : BMC Bioinformatics. 18, 1, 531.

    Research output: Contribution to journalArticle

  8. 2016
  9. TopHat-Recondition: A post-processor for TopHat unmapped reads

    Christian Brueffer & Lao H. Saal, 2016 May 4, In : BMC Bioinformatics. 17, 1, 199.

    Research output: Contribution to journalArticle

  10. BayesFlow: latent modeling of flow cytometry cell populations.

    Johnsson, K., Jonas Wallin & Fontes, M., 2016, In : BMC Bioinformatics. 17, 1, 25.

    Research output: Contribution to journalArticle

  11. 2015
  12. MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics

    Kushwaha, S., Lokeshwaran Manoharan, Meerupati, T., Katarina Hedlund & Dag Ahrén, 2015, In : BMC Bioinformatics. 16, 65.

    Research output: Contribution to journalArticle

  13. 2012
  14. VarioML framework for comprehensive variation data representation and exchange

    Byrne, M., Fokkema, I. F. A. C., Lancaster, O., Adamusiak, T., Ahonen-Bishopp, A., Atlan, D., Beroud, C., Cornell, M., Dalgleish, R., Devereau, A., Patrinos, G. P., Swertz, M. A., Taschner, P. E. M., Thorisson, G. A., Mauno Vihinen, Brookes, A. J. & Muilu, J., 2012, In : BMC Bioinformatics. 13, 254

    Research output: Contribution to journalArticle

  15. 2011
  16. Identification of conserved gene clusters in multiple genomes based on synteny and homology

    Anasua Sarkar, Soueidan, H. & Nikolski, M., 2011 Oct 5, In : BMC Bioinformatics. 12, Suppl. 9, S18.

    Research output: Contribution to journalArticle

  17. The projection score - an evaluation criterion for variable subset selection in PCA visualization

    Fontes, M. & Soneson, C., 2011, In : BMC Bioinformatics. 12, 307.

    Research output: Contribution to journalArticle

  18. 2010
  19. Detecting microRNA activity from gene expression data

    Madden, S. F., Carpenter, S. B., Jeffery, I. B., Harry Björkbacka, Fitzgerald, K. A., O'Neill, L. A. & Higgins, D. G., 2010, In : BMC Bioinformatics. 11

    Research output: Contribution to journalArticle

  20. Integrative analysis of gene expression and copy number alterations using canonical correlation analysis

    Soneson, C., Henrik Lilljebjörn, Thoas Fioretos & Fontes, M., 2010, In : BMC Bioinformatics. 11, 191, p. 1-20

    Research output: Contribution to journalArticle

  21. 2009
  22. BASE--2nd generation software for microarray data management and analysis.

    Johan Vallon-Christersson, Nordborg, N., Svensson, M. & Jari Häkkinen, 2009, In : BMC Bioinformatics. 10, Oct 12, 330.

    Research output: Contribution to journalArticle

  23. How to find simple and accurate rules for viral protease cleavage specificities

    Rognvaldsson, T., Etchells, T. A., You, L., Garwicz, D., Jarman, I. & Lisboa, P. J. G., 2009, In : BMC Bioinformatics. 10

    Research output: Contribution to journalArticle

  24. 2008
  25. PseudoGeneQuest - service for identification of different pseudogene types in the human genome.

    Ortutay, C. & Mauno Vihinen, 2008, In : BMC Bioinformatics. 9, 299.

    Research output: Contribution to journalArticle

  26. 2006
  27. A statistical score for assessing the quality of multiple sequence alignments.

    Ahola, V., Aittokallio, T., Mauno Vihinen & Uusipaikka, E., 2006, In : BMC Bioinformatics. 7, 484.

    Research output: Contribution to journalArticle

  28. Improving missing value imputation of microarray data by using spot quality weights

    Johansson, P. & Jari Häkkinen, 2006, In : BMC Bioinformatics. 7, 306.

    Research output: Contribution to journalArticle

  29. Microarray image analysis: background estimation using quantile and morphological filters

    Bengtsson, A. & Bengtsson, H., 2006, In : BMC Bioinformatics. 7

    Research output: Contribution to journalArticle

  30. 2005
  31. Dynamic covariation between gene expression and proteome characteristics.

    Sharabiani, M. T. A., Siermala, M., Lehtinen, T. O. & Mauno Vihinen, 2005, In : BMC Bioinformatics. 6, 215.

    Research output: Contribution to journalArticle

  32. Signal transduction pathway profiling of individual tumor samples

    Breslin, T., Krogh, M., Peterson, C. & Carl Troein, 2005, In : BMC Bioinformatics. 6, 163

    Research output: Contribution to journalArticle

  33. 2004
  34. BioBuilder as a database development and functional annotation platform for proteins

    Navarro, J. D., Talreja, N., Peri, S., Vrushabendra, B. M., BP Rashmi, Padma, N., Surendranath, V., Jonnalagadda, C. K., Kousthub, P. S., Deshpande, N., Shanker, K. & Pandey, A., 2004 Apr 20, In : BMC Bioinformatics. 5, 43.

    Research output: Contribution to journalArticle

  35. Comparing Functional Annotation Analyses with Catmap

    Breslin, T., Patrik Edén & Krogh, M., 2004, In : BMC Bioinformatics. 5, p. 193

    Research output: Contribution to journalArticle

  36. galaxieEST: addressing EST identity through automated phylogenetic analysis

    Nilsson, R. H., Rajashekar, B., Larsson, K. H. & Ursing, B. M., 2004, In : BMC Bioinformatics. 5

    Research output: Contribution to journalArticle

  37. Incidence of "quasi-ditags" in catalogs generated by Serial Analysis of Gene Expression (SAGE)

    Anisimov, S. & Sharov, AA., 2004, In : BMC Bioinformatics. 5

    Research output: Contribution to journalArticle

  38. Multiclass discovery in array data

    Liu, Y. & Markus Ringnér, 2004, In : BMC Bioinformatics. 5, 70.

    Research output: Contribution to journalArticle

  39. 2003
  40. Probabilistic estimation of microarray data reliability and underlying gene expression

    Bilke, S., Breslin, T. & Mikael Sigvardsson, 2003, In : BMC Bioinformatics. 4, 40

    Research output: Contribution to journalArticle