BMC Genomics, 1471-2164

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  1. Article
  2. Benchmarking subcellular localization and variant tolerance predictors on membrane proteins

    Orioli, T. & Mauno Vihinen, 2019 Jul 16, In : BMC Genomics. 20, 8, 547.

    Research output: Contribution to journalArticle

  3. Assembling large genomes: Analysis of the stick insect (Clitarchus hookeri) genome reveals a high repeat content and sex-biased genes associated with reproduction

    Wu, C., Victoria G. Twort, Crowhurst, R. N., Newcomb, R. D. & Buckley, T. R., 2017 Nov 16, In : BMC Genomics. 18, 1, 884.

    Research output: Contribution to journalArticle

  4. Genetic determinants of growth hormone and GH-related phenotypes

    Erik Hallengren, Almgren, P., Svensson, M., Gallo, W., Gunnar Engström, Margaretha Persson & Olle Melander, 2017 Oct 24, In : BMC Genomics. 18, p. 1-9 822.

    Research output: Contribution to journalArticle

  5. Dual transcriptome of the immediate neutrophil and Candida albicans interplay

    Niemiec, M. J., Grumaz, C., David Ermert, Desel, C., Shankar, M., Lopes, J. P., Mills, I. G., Stevens, P., Sohn, K. & Urban, C. F., 2017 Sep 6, In : BMC Genomics. 18, 1, 696.

    Research output: Contribution to journalArticle

  6. 100 million years of multigene family evolution: Origin and evolution of the avian MHC class IIB

    Goebel, J., Promerová, M., Bonadonna, F., McCoy, K. D., Serbielle, C., Maria Strandh, Yannic, G., Burri, R. & Fumagalli, L., 2017 Jun 13, In : BMC Genomics. 18, 1, 460.

    Research output: Contribution to journalArticle

  7. Nucleotide diversity inflation as a genome- wide response to experimental lifespan extension in Drosophila melanogaster

    Michalak, P., Kang, L., Sarup, P. M., Mads F Schou & Loeschcke, V., 2017, In : BMC Genomics. 18, 11 p., 18:84.

    Research output: Contribution to journalArticle

  8. Transcriptome profiling in the damselfly Ischnura elegans identifies genes with sex-biased expression

    Pallavi Chauhan, Wellenreuther, M. & Bengt Hansson, 2016 Dec 1, In : BMC Genomics. 17, 1, 985.

    Research output: Contribution to journalArticle

  9. OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

    Alfredo Rago, Gilbert, D. G., Choi, J-H., Sackton, T. B., Wang, X., Kelkar, Y. D., Werren, J. H. & Colbourne, J. K., 2016 Aug 25, In : BMC Genomics. 17, 25 p., 17:678.

    Research output: Contribution to journalArticle

  10. De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite.

    Pauli, M., Chakarov, N., Rupp, O., Kalinowski, J., Goesmann, A., Sorenson, M. D., Krüger, O. & Hoffman, J. I., 2015, In : BMC Genomics. 16, 1038.

    Research output: Contribution to journalArticle

  11. Polyketide synthesis genes associated with toxin production in two species of Gambierdiscus (Dinophyceae).

    Kohli, G. S., John, U., Figueroa, R., Rhodes, L. L., Harwood, D. T., Groth, M., Bolch, C. J. S. & Murray, S. A., 2015, In : BMC Genomics. 16, 410.

    Research output: Contribution to journalArticle

  12. Extensive intra-phylotype diversity in lactobacilli and bifidobacteria from the honeybee gut.

    Ellegaard, K. M., Tamarit, D., Javelind, E., Tobias Olofsson, Andersson, S. G. & Alejandra Vasquez, 2015, In : BMC Genomics. 16, 1, 284.

    Research output: Contribution to journalArticle

  13. Evaluation of high throughput gene expression platforms using a genomic biomarker signature for prediction of skin sensitization.

    Forreryd, A., Johansson, H., Albrekt, A-S. & Malin Lindstedt, 2014, In : BMC Genomics. 15, 379.

    Research output: Contribution to journalArticle

  14. De novo transcriptome of Ischnura elegans provides insights into sensory biology, colour and vision genes

    Pallavi Chauhan, Bengt Hansson, Kraaijeveld, K., de Knijff, P., Erik Svensson & Wellenreuther, M., 2014, In : BMC Genomics. 15, 808.

    Research output: Contribution to journalArticle

  15. Sex- and tissue-specific profiles of chemosensory gene expression in a herbivorous gall-inducing fly (Diptera: Cecidomyiidae)

    Martin N Andersson, Videvall, E., Walden, K. KO., Harris, M. O., Robertson, H. M. & Christer Löfstedt, 2014, In : BMC Genomics. 15, p. 1–19 19 p., 501.

    Research output: Contribution to journalArticle

  16. Proteomics and transcriptomics of the BABA-induced resistance response in potato using a novel functional annotation approach

    Bengtsson, T., Weighill, D., Proux-Wera, E., Fredrik Levander, Resjo, S., Burra, D. D., Moushib, L., Hedley, P. E., Liljeroth, E., Jacobson, D., Alexandersson, E. & Andreasson, E., 2014, In : BMC Genomics. 15

    Research output: Contribution to journalArticle

  17. Species and gene divergence in Littorina snails detected by array comparative genomic hybridization

    Panova, M., Tomas Johansson, Björn Canbäck, Johan Bentzer, Rosenblad, M. A., Johannesson, K., Anders Tunlid & Andre, C., 2014, In : BMC Genomics. 15, 687.

    Research output: Contribution to journalArticle

  18. Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions

    Ali, A., Alexandersson, E., Sandin, M., Resjo, S., Lenman, M., Hedley, P., Fredrik Levander & Andreasson, E., 2014, In : BMC Genomics. 15, 497.

    Research output: Contribution to journalArticle

  19. Interspecific and host-related gene expression patterns in nematode-trapping fungi.

    Andersson, K-M., Kumar, D., Johan Bentzer, Friman, E., Dag Ahrén & Anders Tunlid, 2014, In : BMC Genomics. 15, 1, 968.

    Research output: Contribution to journalArticle

  20. Draft genome sequence of the male-killing Wolbachia strain wBol1 reveals recent horizontal gene transfers from diverse sources

    Anne Duplouy, Iturbe-Ormaetxe, I., Beatson, S. A., Szubert, J. M., Brownlie, J. C., McMeniman, C. J., McGraw, E. A., Hurst, G. D. D., Charlat, S., O'Neill, S. L. & Woolfit, M., 2013 Jan 16, In : BMC Genomics. 14, 1, 20.

    Research output: Contribution to journalArticle

  21. Antennal transcriptome analysis of the chemosensory gene families in the tree killing bark beetles, Ips typographus and Dendroctonus ponderosae (Coleoptera: Curculionidae: Scolytinae)

    Martin N Andersson, Grosse-Wilde, E., Keeling, C. I., Bengtsson, J. M., Yuen, M. M. S., Li, M., Hillbur, Y., Bohlmann, J., Hansson, B. S. & Schlyter, F., 2013, In : BMC Genomics. 14, 198.

    Research output: Contribution to journalArticle

  22. Human native lipoprotein-induced de novo DNA methylation is associated with repression of inflammatory genes in THP-1 macrophages

    Rangel-Salazar, R., Lindholm, M., Aguilar-Salinas, C. A., Alvarado-Caudillo, Y., Dossing, K. B., Esteller, M., Labourier, E., Lund, G., Nielsen, F. C., Rodriguez-Rios, D., Solis-Martinez, M. O., Wrobel, K., Wrobel, K. & Zaina, S., 2011, In : BMC Genomics. 12

    Research output: Contribution to journalArticle

  23. The sex-biased brain: sexual dimorphism in gene expression in two species of songbirds

    Naurin, S., Bengt Hansson, Dennis Hasselquist, Kim, Y-H. & Staffan Bensch, 2011, In : BMC Genomics. 12

    Research output: Contribution to journalArticle

  24. Genomics based analysis of interactions between developing B-lymphocytes and stromal cells reveal complex interactions and two-way communication

    Zetterblad, J., Qian, H., Zandi, S., Månsson, R., Lagergren, A., Hansson, F., David Bryder, Paulsson, N. & Mikael Sigvardsson, 2010, In : BMC Genomics. 11, 108.

    Research output: Contribution to journalArticle

  25. Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain

    Seth-Smith, H. M. B., Harris, S. R., Persson, K., Marsh, P., Barron, A., Bignell, A., Bjartling, C., Clark, L., Cutcliffe, L. T., Lambden, P. R., Lennard, N., Lockey, S. J., Quail, M. A., Salim, O., Skilton, R. J., Wang, Y., Holland, M. J., Parkhill, J., Thomson, N. R. & Clarke, I. N., 2009, In : BMC Genomics. 10

    Research output: Contribution to journalArticle

  26. Independent evolution of neurotoxin and flagellar genetic loci in proteolytic Clostridium botulinum

    Carter, A. T., Catherine Paul, Mason, D. R., Twine, S. M., Alston, M. J., Logan, S. M., Austin, J. W. & Peck, M. W., 2009, In : BMC Genomics. 10

    Research output: Contribution to journalArticle

  27. Prediction of disease-related mutations affecting protein localization.

    Laurila, K. & Mauno Vihinen, 2009, In : BMC Genomics. 10, 122.

    Research output: Contribution to journalArticle

  28. Complex evolution of the DAL5 transporter family.

    Hellborg, L., Woolfit, M., Arthursson-Hellborg, M. & Piskur, J., 2008, In : BMC Genomics. 9, 164.

    Research output: Contribution to journalArticle

  29. The Songbird Neurogenomics (SoNG) Initiative: Community-based tools and strategies for study of brain gene function and evolution

    Replogle, K., Arnold, A. P., Ball, G. F., Band, M., Bensch, S., Brenowitz, E. A., Dong, S., Drnevich, J., Ferris, M., George, J. M., Gong, G., Hasselquist, D., Hernandez, A. G., Kim, R., Lewin, H. A., Liu, L., Lovell, P. V., Mello, C. V., Naurin, S., Rodriguez-Zas, S. & 3 othersThimmapuram, J., Wade, J. & Clayton, D. F., 2008, In : BMC Genomics. 9, 131

    Research output: Contribution to journalArticle

  30. Multiway real-time PCR gene expression profiling in yeast Saccharomyces cerevisiae reveals altered transcriptional response of ADH-genes to glucose stimuli

    Ståhlberg, A., Elbing, K., Andrade-Garda, J. M., Sjögreen, B., Forootan, A. & Kubista, M., 2008, In : BMC Genomics. 9, 170

    Research output: Contribution to journalArticle

  31. "NeuroStem Chip": a novel highly specialized tool to study neural differentiation pathways in human stem cells.

    Anisimov, S., Christophersen, N., Correia, A. S., Jia-Yi Li & Brundin, P., 2007, In : BMC Genomics. 8, Feb 8, p. 46-46

    Research output: Contribution to journalArticle

  32. Diagnostic and prognostic gene expression signatures in 177 soft tissue sarcomas: hypoxia-induced transcription profile signifies metastatic potential.

    Francis, P., Namlos, H. M., Müller, C., Patrik Edén, Fernebro, J., Berner, J-M., Bjerkehagen, B., Åkerman, M., Pär-Ola Bendahl, Anna Isinger Ekstrand, Anders Rydholm, Myklebost, O. & Mef Nilbert, 2007, In : BMC Genomics. 8

    Research output: Contribution to journalArticle

  33. Positional and functional mapping of a neuroblastoma differentiation gene on chromosome 11

    De Preter, K., Vandesompele, J., Menten, B., Carr, P., Fiegler, H., Edsjö, A., Carter, NP., Yigit, N., Waelput, W., Van Roy, N., Bader, S., Sven Påhlman & Speleman, F., 2005, In : BMC Genomics. 6

    Research output: Contribution to journalArticle

  34. Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals

    Nelander, S., Larsson, E., Kristiansson, E., Mansson, R., Nerman, O., Mikael Sigvardsson, Mostad, P. & Lindahl, P., 2005, In : BMC Genomics. 6, p. 21-21

    Research output: Contribution to journalArticle

  35. Comparative study of methyl-CpG-binding domain proteins

    Roloff, T. C., Ropers, H. H. & Nuber, U., 2003, In : BMC Genomics. 4, 1

    Research output: Contribution to journalArticle

  36. Review article
  37. Systematics for types and effects of DNA variations

    Mauno Vihinen, 2018 Dec 28, In : BMC Genomics. 19, 1, 974.

    Research output: Contribution to journalReview article