BMC Genomics, 1471-2164

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  2. ProTstab - Predictor for cellular protein stability

    Yang Yang, Xuesong Ding, Guanchen Zhu, Abhishek Niroula, Qiang Lv & Mauno Vihinen, 2019 Nov 4, In : BMC Genomics. 20, 1, 804.

    Research output: Contribution to journalArticle

  3. Benchmarking subcellular localization and variant tolerance predictors on membrane proteins

    Tommaso Orioli & Mauno Vihinen, 2019 Jul 16, In : BMC Genomics. 20, 8, 547.

    Research output: Contribution to journalArticle

  4. Assembling large genomes: Analysis of the stick insect (Clitarchus hookeri) genome reveals a high repeat content and sex-biased genes associated with reproduction

    Chen Wu, Victoria G. Twort, Ross N. Crowhurst, Richard D. Newcomb & Thomas R. Buckley, 2017 Nov 16, In : BMC Genomics. 18, 1, 884.

    Research output: Contribution to journalArticle

  5. Genetic determinants of growth hormone and GH-related phenotypes

    Erik Hallengren, Peter Almgren, Malin Svensson, Widet Gallo, Gunnar Engström, Margaretha Persson & Olle Melander, 2017 Oct 24, In : BMC Genomics. 18, p. 1-9 822.

    Research output: Contribution to journalArticle

  6. Dual transcriptome of the immediate neutrophil and Candida albicans interplay

    Maria J. Niemiec, Christian Grumaz, David Ermert, Christiane Desel, Madhu Shankar, José Pedro Lopes, Ian G. Mills, Philip Stevens, Kai Sohn & Constantin F. Urban, 2017 Sep 6, In : BMC Genomics. 18, 1, 696.

    Research output: Contribution to journalArticle

  7. 100 million years of multigene family evolution: Origin and evolution of the avian MHC class IIB

    Julien Goebel, Marta Promerová, Francesco Bonadonna, Karen D. McCoy, Céline Serbielle, Maria Strandh, Glenn Yannic, Reto Burri & Luca Fumagalli, 2017 Jun 13, In : BMC Genomics. 18, 1, 460.

    Research output: Contribution to journalArticle

  8. Nucleotide diversity inflation as a genome- wide response to experimental lifespan extension in Drosophila melanogaster

    Pawel Michalak, Lin Kang, Pernille M Sarup, Mads F Schou & Volker Loeschcke, 2017, In : BMC Genomics. 18, 11 p., 18:84.

    Research output: Contribution to journalArticle

  9. Transcriptome profiling in the damselfly Ischnura elegans identifies genes with sex-biased expression

    Pallavi Chauhan, Maren Wellenreuther & Bengt Hansson, 2016 Dec 1, In : BMC Genomics. 17, 1, 985.

    Research output: Contribution to journalArticle

  10. OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

    Alfredo Rago, Donald G Gilbert, Jeong-Hyeon Choi, Timothy B Sackton, Xu Wang, Yogeshwar D Kelkar, John H Werren & John K Colbourne, 2016 Aug 25, In : BMC Genomics. 17, 25 p., 17:678.

    Research output: Contribution to journalArticle

  11. De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite.

    Martina Pauli, Nayden Chakarov, Oliver Rupp, Jörn Kalinowski, Alexander Goesmann, Michael D Sorenson, Oliver Krüger & Joseph Ivan Hoffman, 2015, In : BMC Genomics. 16, 1038.

    Research output: Contribution to journalArticle

  12. Polyketide synthesis genes associated with toxin production in two species of Gambierdiscus (Dinophyceae).

    Gurjeet S Kohli, Uwe John, Rosa Figueroa, Lesley L Rhodes, D Tim Harwood, Marco Groth, Christopher J S Bolch & Shauna A Murray, 2015, In : BMC Genomics. 16, 410.

    Research output: Contribution to journalArticle

  13. Extensive intra-phylotype diversity in lactobacilli and bifidobacteria from the honeybee gut.

    Kirsten M Ellegaard, Daniel Tamarit, Emelie Javelind, Tobias Olofsson, Siv Ge Andersson & Alejandra Vasquez, 2015, In : BMC Genomics. 16, 1, 284.

    Research output: Contribution to journalArticle

  14. Finding the missing honey bee genes: lessons learned from a genome upgrade

    Honeybee Genome Sequencing Consortium Honeybee Genome Sequencing Consortium, 2014 Jan 30, In : BMC Genomics. 15, 29 p., 86.

    Research output: Contribution to journalArticle

  15. Evaluation of high throughput gene expression platforms using a genomic biomarker signature for prediction of skin sensitization.

    Andy Forreryd, Henrik Johansson, Ann-Sofie Albrekt & Malin Lindstedt, 2014, In : BMC Genomics. 15, 379.

    Research output: Contribution to journalArticle

  16. De novo transcriptome of Ischnura elegans provides insights into sensory biology, colour and vision genes

    Pallavi Chauhan, Bengt Hansson, Ken Kraaijeveld, Peter de Knijff, Erik Svensson & Maren Wellenreuther, 2014, In : BMC Genomics. 15, 808.

    Research output: Contribution to journalArticle

  17. Sex- and tissue-specific profiles of chemosensory gene expression in a herbivorous gall-inducing fly (Diptera: Cecidomyiidae)

    Martin N Andersson, Elin Videvall, Kimberley KO Walden, Marion O Harris, Hugh M Robertson & Christer Löfstedt, 2014, In : BMC Genomics. 15, p. 1–19 19 p., 501.

    Research output: Contribution to journalArticle

  18. Proteomics and transcriptomics of the BABA-induced resistance response in potato using a novel functional annotation approach

    Therese Bengtsson, Deborah Weighill, Estelle Proux-Wera, Fredrik Levander, Svante Resjo, Dharani Dhar Burra, Laith Moushib, Pete E. Hedley, Erland Liljeroth, Dan Jacobson, Erik Alexandersson & Erik Andreasson, 2014, In : BMC Genomics. 15

    Research output: Contribution to journalArticle

  19. Species and gene divergence in Littorina snails detected by array comparative genomic hybridization

    Marina Panova, Tomas Johansson, Björn Canbäck, Johan Bentzer, Magnus Alm Rosenblad, Kerstin Johannesson, Anders Tunlid & Carl Andre, 2014, In : BMC Genomics. 15, 687.

    Research output: Contribution to journalArticle

  20. Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions

    Ashfaq Ali, Erik Alexandersson, Marianne Sandin, Svante Resjo, Marit Lenman, Pete Hedley, Fredrik Levander & Erik Andreasson, 2014, In : BMC Genomics. 15, 497.

    Research output: Contribution to journalArticle

  21. Interspecific and host-related gene expression patterns in nematode-trapping fungi.

    Karl-Magnus Andersson, Dharmendra Kumar, Johan Bentzer, Eva Friman, Dag Ahrén & Anders Tunlid, 2014, In : BMC Genomics. 15, 1, 968.

    Research output: Contribution to journalArticle

  22. Draft genome sequence of the male-killing Wolbachia strain wBol1 reveals recent horizontal gene transfers from diverse sources

    Anne Duplouy, Iñaki Iturbe-Ormaetxe, Scott A. Beatson, Jan M. Szubert, Jeremy C. Brownlie, Conor J. McMeniman, Elizabeth A. McGraw, Gregory D.D. Hurst, Sylvain Charlat, Scott L. O'Neill & Megan Woolfit, 2013 Jan 16, In : BMC Genomics. 14, 1, 20.

    Research output: Contribution to journalArticle

  23. Antennal transcriptome analysis of the chemosensory gene families in the tree killing bark beetles, Ips typographus and Dendroctonus ponderosae (Coleoptera: Curculionidae: Scolytinae)

    Martin N Andersson, Ewald Grosse-Wilde, Christopher I. Keeling, Jonas M. Bengtsson, Macaire M. S. Yuen, Maria Li, Ylva Hillbur, Joerg Bohlmann, Bill S. Hansson & Fredrik Schlyter, 2013, In : BMC Genomics. 14, 198.

    Research output: Contribution to journalArticle

  24. Characterisation of a transcriptome to find sequence differences between two differentially migrating subspecies of the willow warbler Phylloscopus trochilus

    Max Lundberg, John Boss, Björn Canbäck, Miriam Liedvogel, Keith Larson, Mats Grahn, Susanne Åkesson, Staffan Bensch & Anthony Wright, 2013, In : BMC Genomics. 14, 330.

    Research output: Contribution to journalArticle

  25. A genomic biomarker signature can predict skin sensitizers using a cell-based in vitro alternative to animal tests

    Henrik Johansson, Malin Lindstedt, Ann-Sofie Albrekt & Carl Borrebaeck, 2011, In : BMC Genomics. 12

    Research output: Contribution to journalArticle

  26. Human native lipoprotein-induced de novo DNA methylation is associated with repression of inflammatory genes in THP-1 macrophages

    Ruben Rangel-Salazar, Marie Lindholm, Carlos A. Aguilar-Salinas, Yolanda Alvarado-Caudillo, Kristina Bv Dossing, Manel Esteller, Emmanuel Labourier, Gertrud Lund, Finn C. Nielsen, Dalia Rodriguez-Rios, Martha O. Solis-Martinez, Katarzyna Wrobel, Kazimierz Wrobel & Silvio Zaina, 2011, In : BMC Genomics. 12

    Research output: Contribution to journalArticle

  27. The sex-biased brain: sexual dimorphism in gene expression in two species of songbirds

    Sara Naurin, Bengt Hansson, Dennis Hasselquist, Yong-Hwan Kim & Staffan Bensch, 2011, In : BMC Genomics. 12

    Research output: Contribution to journalArticle

  28. Genomics based analysis of interactions between developing B-lymphocytes and stromal cells reveal complex interactions and two-way communication

    Jenny Zetterblad, Hong Qian, Sasan Zandi, Robert Månsson, Anna Lagergren, Frida Hansson, David Bryder, Nils Paulsson & Mikael Sigvardsson, 2010, In : BMC Genomics. 11, 108.

    Research output: Contribution to journalArticle

  29. Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain

    Helena M. B. Seth-Smith, Simon R. Harris, Kenneth Persson, Pete Marsh, Andrew Barron, Alexandra Bignell, Carina Bjartling, Louise Clark, Lesley T. Cutcliffe, Paul R. Lambden, Nicola Lennard, Sarah J. Lockey, Michael A. Quail, Omar Salim, Rachel J. Skilton, Yibing Wang, Martin J. Holland, Julian Parkhill, Nicholas R. Thomson & Ian N. Clarke, 2009, In : BMC Genomics. 10

    Research output: Contribution to journalArticle

  30. Independent evolution of neurotoxin and flagellar genetic loci in proteolytic Clostridium botulinum

    Andrew T. Carter, Catherine Paul, David R. Mason, Susan M. Twine, Mark J. Alston, Susan M. Logan, John W. Austin & Michael W. Peck, 2009, In : BMC Genomics. 10

    Research output: Contribution to journalArticle

  31. Prediction of disease-related mutations affecting protein localization.

    Kirsti Laurila & Mauno Vihinen, 2009, In : BMC Genomics. 10, 122.

    Research output: Contribution to journalArticle

  32. Complex evolution of the DAL5 transporter family.

    Linda Hellborg, Megan Woolfit, Mattias Arthursson-Hellborg & Jure Piskur, 2008, In : BMC Genomics. 9, 164.

    Research output: Contribution to journalArticle

  33. The Songbird Neurogenomics (SoNG) Initiative: Community-based tools and strategies for study of brain gene function and evolution

    Kirstin Replogle, Arthur P Arnold, Gregory F Ball, Mark Band, Staffan Bensch, Eliot A Brenowitz, Shu Dong, Jenny Drnevich, Margaret Ferris, Julia M. George, George Gong, Dennis Hasselquist, Alvaro G Hernandez, Ryan Kim, Harris A Lewin, Lei Liu, Peter V Lovell, Claudio V Mello, Sara Naurin, Sandra Rodriguez-Zas & 3 others, Jyothi Thimmapuram, Juli Wade & David F Clayton, 2008, In : BMC Genomics. 9, 131

    Research output: Contribution to journalArticle

  34. Accounting for one-channel depletion improves missing value imputation in 2-dye microarray data

    Cecilia Ritz & Patrik Edén, 2008, In : BMC Genomics. 9

    Research output: Contribution to journalArticle

  35. Multiway real-time PCR gene expression profiling in yeast Saccharomyces cerevisiae reveals altered transcriptional response of ADH-genes to glucose stimuli

    Anders Ståhlberg, Karin Elbing, Jose Manuel Andrade-Garda, Björn Sjögreen, Amin Forootan & Mikael Kubista, 2008, In : BMC Genomics. 9, 170

    Research output: Contribution to journalArticle

  36. "NeuroStem Chip": a novel highly specialized tool to study neural differentiation pathways in human stem cells.

    Sergey Anisimov, Nicolaj Christophersen, Ana S Correia, Jia-Yi Li & Patrik Brundin, 2007, In : BMC Genomics. 8, Feb 8, p. 46-46

    Research output: Contribution to journalArticle

  37. Diagnostic and prognostic gene expression signatures in 177 soft tissue sarcomas: hypoxia-induced transcription profile signifies metastatic potential.

    Princy Francis, Heidi Maria Namlos, Christoph Müller, Patrik Edén, Josefin Fernebro, Jeanne-Marie Berner, Bodil Bjerkehagen, Måns Åkerman, Pär-Ola Bendahl, Anna Isinger Ekstrand, Anders Rydholm, Ola Myklebost & Mef Nilbert, 2007, In : BMC Genomics. 8

    Research output: Contribution to journalArticle

  38. Positional and functional mapping of a neuroblastoma differentiation gene on chromosome 11

    K De Preter, J Vandesompele, B Menten, P Carr, H Fiegler, Anders Edsjö, NP Carter, N Yigit, W Waelput, N Van Roy, S Bader, Sven Påhlman & F Speleman, 2005, In : BMC Genomics. 6

    Research output: Contribution to journalArticle

  39. Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals

    S. Nelander, E. Larsson, E. Kristiansson, R. Mansson, O. Nerman, Mikael Sigvardsson, P. Mostad & P. Lindahl, 2005, In : BMC Genomics. 6, p. 21-21

    Research output: Contribution to journalArticle

  40. Comparative study of methyl-CpG-binding domain proteins

    Tim C Roloff, H Hilger Ropers & Ulrike Nuber, 2003, In : BMC Genomics. 4, 1

    Research output: Contribution to journalArticle

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