Genome Research, 1549-5469

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  1. Bichir HoxA cluster sequence reveals surprising trends in ray-finned fish genomic evolution

    Chiu, CH., Dewar, K., Wagner, GP., Takahashi, K., Ruddle, F., Ledje, C., Bartsch, P., Scemama, JL., Stellwag, E., Fried, C., Prohaska, SJ., Stadler, PF. & Amemiya, CT., 2004, In : Genome Research. 14, 1, p. 11-17

    Research output: Contribution to journalArticle

  2. Cell-type-specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes

    Zhang, T., Choi, J., Kovacs, M. A., Shi, J., Xu, M., Consortium, M. M. A., Goldstein, A. M., Trower, A. J., Bishop, D. T., Iles, M. M., Duffy, D. L., MacGregor, S., Amundadottir, L. T., Law, M. H., Loftus, S. K., Pavan, W. J., Brown, K. M., NISC Comparative Sequencing Program & Håkan Olsson, 2018 Nov 1, In : Genome Research. 28, 11, p. 1621-1635

    Research output: Contribution to journalArticle

  3. Development of human protein reference database as an initial platform for approaching systems biology in humans

    Peri, S., Navarro, J. D., Amanchy, R., Kristiansen, T. Z., Jonnalagadda, C. K., Surendranath, V., Niranjan, V., Muthusamy, B., Gandhi, T. K. B., Gronborg, M., Ibarrola, N., Deshpande, N., Shanker, K., Shivashankar, H. N., Rashmi, B. P., Ramya, M. A., Zhao, Z., Chandrika, K. N., Padma, N., Harsha, H. C. & 32 others, Yatish, A. J., Kavitha, M. P., Menezes, M., Choudhury, D. R., Suresh, S., Ghosh, N., Saravana, R., Chandran, S., Krishna, S., Joy, M., Anand, S. K., Madavan, V., Joseph, A., Wong, G. W., Schiemann, W. P., Constantinescu, S. N., Huang, L., Khosravi-Far, R., Steen, H., Tewari, M., Ghaffari, S., Blobe, G. C., Dang, C. V., Garcia, J. G. N., Pevsner, J., Jensen, O. N., Roepstorff, P., Deshpande, K. S., Chinnaiyan, A. M., Hamosh, A., Chakravarti, A. & Pandey, A., 2003 Oct, In : Genome Research. 13, 10, p. 2363-71 9 p.

    Research output: Contribution to journalArticle

  4. Frequent somatic transfer of mitochondrial DNA into the nuclear genome of human cancer cells.

    Ju, Y. S., Tubio, J. M. C., Mifsud, W., Fu, B., Davies, H. R., Ramakrishna, M., Li, Y., Yates, L., Gundem, G., Tarpey, P. S., Behjati, S., Papaemmanuil, E., Martin, S., Fullam, A., Gerstung, M., Nangalia, J., Green, A. R., Caldas, C., Borg, Å., Tutt, A. & 26 others, Lee, M. T. M., Van't Veer, L. J., Tan, B. K. T., Aparicio, S., Span, P. N., Martens, J. W. M., Knappskog, S., Vincent-Salomon, A., Børresen-Dale, A-L., Eyfjörd, J. E., Flanagan, A. M., Foster, C., Neal, D. E., Cooper, C., Eeles, R., Lakhani, S. R., Desmedt, C., Thomas, G., Richardson, A. L., Purdie, C. A., Thompson, A. M., McDermott, U., Yang, F., Nik-Zainal, S., Campbell, P. J. & Stratton, M. R., 2015, In : Genome Research. 25, 6, p. 814-824

    Research output: Contribution to journalArticle

  5. Gene expression profiling in single cells from the pancreatic islets of Langerhans reveals lognormal distribution of mRNA levels.

    Bengtsson, M., Stahlberg, A., Rorsman, P. & Kubista, M., 2005, In : Genome Research. 15, 10, p. 1388-1392

    Research output: Contribution to journalArticle

  6. Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum

    Mourier, T., Carret, C., Kyes, S., Christodoulou, Z., Gardner, P. P., Jeffares, D. C., Pinches, R., Barrell, B., Berriman, M., Griffiths-Jones, S., Ivens, A., Newbold, C. & Pain, A., 2008, In : Genome Research. 18, 2, p. 281-292

    Research output: Contribution to journalArticle

  7. Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates

    van de Lagemaat, LN., Gagnier, L., Patrik Medstrand & Mager, DL., 2005, In : Genome Research. 15, 9, p. 1243-1249

    Research output: Contribution to journalArticle

  8. Guthrie card methylomics identifies temporally stable epialleles that are present at birth in humans

    Beyan, H., Down, T. A., Ramagopalan, S. V., Uvebrant, K., Ramelius, A., Holland, M. L., Gemma, C., Giovannoni, G., Boehm, B. O., Ebers, G. C., Åke Lernmark, Corrado Cilio, Leslie, R. D. & Rakyan, V. K., 2012, In : Genome Research. 22, 11, p. 2138-2145

    Research output: Contribution to journalArticle

  9. Lymphopenia in the BB rat model of type 1 diabetes is due to a mutation in a novel immune-associated nucleotide (Ian)-related gene.

    MacMurray, A. J., Moralejo, D. H., Kwitek, A. E., Rutledge, E. A., Van Yserloo, B., Gohlke, P., Speros, S. J., Snyder, B., Schaefer, J., Bieg, S., Jiang, J., Ettinger, R. A., Fuller, J., Daniels, T. L., Pettersson, A., Orlebeke, K., Birren, B., Jacob, H. J., Lander, E. S. & Åke Lernmark, 2002, In : Genome Research. 12, 7, p. 1029-1039

    Research output: Contribution to journalArticle

  10. Molecular basis for the dominant white phenotype in the domestic pig

    Marklund, S., Kijas, J., Rodriguez-Martinez, H., Lars Rönnstrand, Funa, K., Moller, M., Lange, D., Edfors-Lilja, I. & Andersson, L., 1998, In : Genome Research. 8, 8, p. 826-833

    Research output: Contribution to journalArticle

  11. Pioneering, chromatin remodeling, and epigenetic constraint in early T-cell gene regulation by SPI1 (PU.1)

    Jonas Ungerbäck, Hosokawa, H., Wang, X., Tobias Strid, Williams, B. A., Mikael Sigvardsson & Rothenberg, E. V., 2018, In : Genome Research. 28, 10, p. 1508-1519 12 p.

    Research output: Contribution to journalArticle

  12. Population genomics in a disease targeted primary cell model

    Grundberg, E., Kwan, T., Ge, B., Lam, K. C. L., Koka, V., Kindmark, A., Mallmin, H., Dias, J., Verlaan, D. J., Ouimet, M., Sinnett, D., Rivadeneira, F., Estrada, K., Hofman, A., van Meurs, J. M., Uitterlinden, A., Beaulieu, P., Graziani, A., Harmsen, E., Ljunggren, O. & 5 others, Ohlsson, C., Mellstrom, D., Magnus Karlsson, Nilsson, O. & Pastinen, T., 2009, In : Genome Research. 19, 11, p. 1942-1952

    Research output: Contribution to journalArticle

  13. Rare allelic forms of PRDM9 associated with childhood leukemogenesis

    Hussin, J., Sinnett, D., Casals, F., Idaghdour, Y., Bruat, V., Saillour, V., Healy, J., Grenier, J-C., de Malliard, T., Busche, S., Spinella, J-F., Larivière, M., Gibson, G., Andersson, A., Holmfeldt, L., Ma, J., Wei, L., Zhang, J., Andelfinger, G., Downing, J. R. & 2 others, Mullighan, C. G. & Awadalla, P., 2013 Mar, In : Genome Research. 23, 3, p. 419-30 12 p.

    Research output: Contribution to journalArticle

  14. Retroelement distributions in the human genome: variations associated with age and proximity to genes.

    Patrik Medstrand, Van De Lagemaat, L. N. & Mager, D. L., 2002, In : Genome Research. 12, 10, p. 1483-1495

    Research output: Contribution to journalArticle

  15. Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

    Simola, D. F., Wissler, L., Donahue, G., Waterhouse, R. M., Helmkampf, M., Roux, J., Nygaard, S., Glastad, K. M., Hagen, D. E., Viljakainen, L., Reese, J. T., Hunt, B. G., Graur, D., Elhaik, E., Kriventseva, E. V., Wen, J., Parker, B. J., Cash, E., Privman, E., Childers, C. P. & 18 others, Muñoz-Torres, M. C., Boomsma, J. J., Bornberg-Bauer, E., Currie, C. R., Elsik, C. G., Suen, G., Goodisman, M. A. D., Keller, L., Liebig, J., Rawls, A., Reinberg, D., Smith, C. D., Smith, C. R., Tsutsui, N., Wurm, Y., Zdobnov, E. M., Berger, S. L. & Gadau, J., 2013 Aug, In : Genome Research. 23, 8, p. 1235-47

    Research output: Contribution to journalArticle

  16. The circular RNome of primary breast cancer

    Smid, M., Wilting, S. M., Uhr, K., Rodríguez-González, F. G., De Weerd, V., Prager-Van Der Smissen, W. J. C., Van Der Vlugt-Daane, M., Van Galen, A., Nik-Zainal, S., Butler, A., Martin, S., Davies, H. R., Staaf, J., Van De Vijver, M. J., Richardson, A. L., MacGrogan, G., Salgado, R., Van Den Eynden, G. G. G. M., Purdie, C. A., Thompson, A. M. & 21 others, Caldas, C., Span, P. N., Sweep, F. C. G. J., Simpson, P. T., Lakhani, S. R., Van Laere, S., Desmedt, C., Paradiso, A., Eyfjord, J., Broeks, A., Vincent-Salomon, A., Futreal, A. P., Knappskog, S., King, T., Viari, A., Børresen-Dale, A. L., Stunnenberg, H. G., Stratton, M., Foekens, J. A., Sieuwerts, A. M. & Martens, J. W. M., 2019 Mar 1, In : Genome Research. 29, 3, p. 356-366 11 p.

    Research output: Contribution to journalArticle

  17. TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells

    Rowe, H. M., Kapopoulou, A., Corsinotti, A., Fasching, L., Macfarlan, T. S., Tarabay, Y., Viville, S., Johan Jakobsson, Pfaff, S. L. & Trono, D., 2013, In : Genome Research. 23, 3, p. 452-461

    Research output: Contribution to journalArticle