Journal of Proteome Research, 1535-3893

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  1. Expression of a Core 3 Disialyl-Le(x) Hexasaccharide in Human Colorectal Cancers: A Potential Marker of Malignant Transformation in Colon.

    Robbe-Masselot, C., Herrmann, A., Maes, E., Ingemar Carlstedt, Michalski, J-C. & Capon, C., 2009, In : Journal of Proteome Research.

    Research output: Contribution to journalArticle

  2. FK506, an Immunosuppressive Drug, Induces Autophagy by Binding to the V-ATPase Catalytic Subunit A in Neuronal Cells

    Kim, D., Hwang, H. Y., Kim, Y. J., Lee, J. Y., Yoo, J. S., György Marko-Varga & Kwon, H. J., 2017 Jan 6, In : Journal of Proteome Research. 16, 1, p. 55-64 10 p.

    Research output: Contribution to journalArticle

  3. Four Areas of Engagement Requiring Strengthening in Modern Proteomics Today.

    Fehniger, T., Boja, E. S., Rodriguez, H., Baker, M. S. & György Marko-Varga, 2014, In : Journal of Proteome Research. 13, 12, p. 5310-5318

    Research output: Contribution to journalDebate/Note/Editorial

  4. Genome-wide Proteomics, Chromosome-centric Human Proteome Project (C-HPP), Part II

    Paik, Y-K., Omenn, G. S., Thongboonkerd, V., György Marko-Varga & Hancock, W. S., 2014, In : Journal of Proteome Research. 13, 1, p. 1-4

    Research output: Contribution to journalDebate/Note/Editorial

  5. Genomics, transcriptomics, and peptidomics of Daphnia pulex neuropeptides and protein hormones

    Dircksen, H., Neupert, S., Predel, R., Verleyen, P., Huybrechts, J., Strauss, J., Hauser, F., Stafflinger, E., Schneider, M., Pauwels, K., Schoofs, L. & Grimmelikhuijzen, C. J. P., 2011 Oct 7, In : Journal of Proteome Research. 10, 10, p. 4478-4504

    Research output: Contribution to journalArticle

  6. Glycomic and transcriptomic response of GSC11 glioblastoma stem cells to STAT3 phosphorylation inhibition and serum-induced differentiation

    He, H., Carol L Nilsson, Emmett, M. R., Marshall, A. G., Kroes, R. A., Moskal, J. R., Ji, Y., Colman, H., Priebe, W., Lang, F. & Conrad, C. A., 2010 May 7, In : Journal of Proteome Research. 9, 5, p. 2098-2108 11 p.

    Research output: Contribution to journalArticle

  7. Hunting for Protein Markers of Hypoxia by Combining Plasma Membrane Enrichment with a New Approach to Membrane Protein Analysis

    Cifani, P., Bendz, M., Wårell, K., Hansson, K. M., Fredrik Levander, Sandin, M., Krogh, M., Ovenberger, M., Fredlund, E., Marica Vaapil, Alexander Pietras, Sven Påhlman & Peter James, 2011, In : Journal of Proteome Research. 10, 4, p. 1645-1656

    Research output: Contribution to journalArticle

  8. Hypothermia Affects Translocation of Numerous Cytoplasmic Proteins Following Global Cerebral Ischemia.

    Teilum, M., Krogh, M., Tadeusz Wieloch & Gustav Mattiasson, 2007, In : Journal of Proteome Research. 6, 7, p. 2822-2832

    Research output: Contribution to journalArticle

  9. Identification of a Novel Autoimmune Peptide Epitope of Prostein in Prostate Cancer

    Pin, E., Henjes, F., Hong, M. G., Wiklund, F., Magnusson, P., Anders Bjartell, Uhlén, M., Nilsson, P. & Schwenk, J. M., 2017 Jan 6, In : Journal of Proteome Research. 16, 1, p. 204-216 13 p.

    Research output: Contribution to journalArticle

  10. Improvements in Mass Spectrometry Assay Library Generation for Targeted Proteomics

    Teleman, J., Hauri, S. & Johan Malmström, 2017 Jul 7, In : Journal of Proteome Research. 16, 7, p. 2384-2392 9 p.

    Research output: Contribution to journalArticle

  11. Inflammatory response in white adipose tissue in the non-obese hormone-sensitive lipase null mouse model.

    Ola Hansson, Ström, K., Güner, N., Nils Wierup, Sundler, F., Höglund, P. & Cecilia Holm, 2006, In : Journal of Proteome Research. 5, 7, p. 1701-1710

    Research output: Contribution to journalArticle

  12. Integrated Chromosome 19 Transcriptomic and Proteomic Datasets Derived from Six Glioma-Derived Cancer Stem Cell Lines

    Lichti, C., Liu, H., Shavkunov, A. S., Mostovenko, E., Sulman, E. P., Ezhilarasan, R., Wang, Q., Kroes, R., Moskal, J. C., Fenyö, D., Oksuz, B. A., Conrad, C. A., Lang, F. F., Berven, F. S., Végvári, Á., Melinda Rezeli, György Marko-Varga, Hober, S. & Nilsson, C. L., 2014, In : Journal of Proteome Research. 13, 1, p. 191-199

    Research output: Contribution to journalArticle

  13. Integrated protein microchip assay with dual fluorescent- and MALDI read-out

    Finnskog, D., Ressine, A., Thomas Laurell & György Marko-Varga, 2004, In : Journal of Proteome Research. 3, 5, p. 988-994

    Research output: Contribution to journalArticle

  14. Integrated Transcriptomic and Glycomic Profiling of Glioma Stem Cell Xenografts

    Wildburger, N. C., Zhou, S., Zacharias, L. G., Kroes, R. A., Moskal, J. R., Schmidt, M., Mirzaei, P., Gumin, J., Lang, F., Mechref, Y. & Carol Nilsson, 2015 Sep 4, In : Journal of Proteome Research. 14, 9, p. 3932-9 8 p.

    Research output: Contribution to journalArticle

  15. Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project

    Diez, P., Droste, C., Degano, R. M., Gonzalez-Munoz, M., Ibarrola, N., Perez-Andres, M., Garin-Muga, A., Segura, V., György Marko-Varga, LaBaer, J., Orfao, A., Corrales, F. J., De Las Rivas, J. & Fuentes, M., 2015, In : Journal of Proteome Research. 14, 9, p. 3530-3540

    Research output: Contribution to journalArticle

  16. In vitro Transcription/Translation System: A Versatile Tool in the Search for Missing Proteins

    Horvatovich, P., Végvári, Á., Saul, J., Park, J., Qiu, J., Syring, M., Pirrotte, P., Petritis, K., Tegeler, T., Aziz, M., Fuentes, M., Diez, P., Gonzalez-Gonzalez, M., Ibarrola, N., Droste, C., De Las Rivas, J., Gil, C., Clemente, F., Hernaez, M. L., Corrales, F. & 6 others, Nilsson, C., Berven, F., Bischoff, R., Fehniger, T., LaBaer, J. & György Marko-Varga, 2015, In : Journal of Proteome Research. 14, 9, p. 3441-3451

    Research output: Contribution to journalArticle

  17. Large-Scale Proteomics Analysis of Human Ovarian Cancer for Biomarkers

    Bengtsson, S., Krogh, M., Al-Khalili Szigyarto, C., Uhlen, M., Schedvins, K., Silfversward, C., Linder, S., Auer, G., Alaiya, A. & Peter James, 2007, In : Journal of Proteome Research. 6, 4, p. 1440-1450

    Research output: Contribution to journalArticle

  18. Linking proteins to disease processes

    György Marko-Varga & Fehniger, T. E., 2004, In : Journal of Proteome Research. 3, 2, p. 155-155

    Research output: Contribution to journalDebate/Note/Editorial

  19. Mass Spectrometry Analysis of a Protein Kinase CK2 beta Subunit Interactome Isolated from Mouse Brain by Affinity Chromatography.

    Arrigoni, G., Pagano, M., Sarno, S., Cesaro, L., Peter James & Pinna, L., 2008, In : Journal of Proteome Research. 7, 3, p. 990-1000

    Research output: Contribution to journalArticle

  20. Metabolomic and proteomic analysis of a clonal insulin-producing beta-cell line (INS-1 832/13).

    Celine Fernandez, Krus, U., Hallgard, E., Peter Spégel, Cecilia Holm, Krogh, M., Wårell, K., Peter James & Hindrik Mulder, 2008, In : Journal of Proteome Research. 7, 1, p. 400-411

    Research output: Contribution to journalArticle

  21. Mining the Proteome Associated with Rheumatic and Autoimmune Diseases

    Ruiz-Romero, C., Lam, M. P. Y., Nilsson, P., Patrik Önnerfjord, Utz, P. J., Van Eyk, J. E., Venkatraman, V., Fert-Bober, J., Watt, F. E. & Blanco, F. J., 2019 Oct 10, In : Journal of Proteome Research.

    Research output: Contribution to journalArticle

  22. Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors.

    Cifani, P., Kirik, U., Waldemarson, S. & Peter James, 2015, In : Journal of Proteome Research. 14, 7, p. 2819-2827

    Research output: Contribution to journalArticle

  23. Multimodel Pathway Enrichment Methods for Functional Evaluation of Expression Regulation.

    Kirik, U., Cifani, P., Albrekt, A-S., Malin Lindstedt, Anders Heyden & Fredrik Levander, 2012, In : Journal of Proteome Research. 11, 5, p. 2955-2967

    Research output: Contribution to journalArticle

  24. Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets

    Chawade, A., Alexandersson, E. & Fredrik Levander, 2014, In : Journal of Proteome Research. 13, 6, p. 3114-3120

    Research output: Contribution to journalArticle

  25. Omics Analyses Reveal a Potential Link between Hormone-Sensitive Lipase and Polyamine Metabolism.

    Fernandez, C., Krogh, M., Wårell, K., Alm, K., Stina Oredsson, Lo Persson, Peter James & Cecilia Holm, 2009, In : Journal of Proteome Research. 8, p. 5008-5019

    Research output: Contribution to journalArticle

  26. Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis

    Johan Malmström, Lee, H., Nesvizhskii, A. I., Shteynberg, D., Mohanty, S., Brunner, E., Ye, M., Weber, G., Eckerskorn, C. & Aebersold, R., 2006 Sep, In : Journal of Proteome Research. 5, 9, p. 2241-9 9 p.

    Research output: Contribution to journalArticle

  27. Prefractionation of cerebrospinal fluid to enhance glycoprotein concentration prior to structural determination with FT-ICR mass spectrometry

    Sihlbom, C., Davidsson, P. & Carol L Nilsson, 2005 Dec 13, In : Journal of Proteome Research. 4, 6, p. 2294-301 8 p.

    Research output: Contribution to journalArticle

  28. Protein Expression Changes in Ovarian Cancer during the Transition from Benign to Malignant.

    Waldemarson, S., Krogh, M., Alaiya, A., Kirik, U., Schedvins, K., Auer, G., Hansson, K. M., Ossola, R., Aebersold, R., Lee, H., Johan Malmström & Peter James, 2012, In : Journal of Proteome Research. 11, 5, p. 2876-2889

    Research output: Contribution to journalArticle

  29. Protein Expression Changes in Skeletal Muscle in Response to Growth Promoter Abuse in Beef Cattle

    Stella, R., Biancotto, G., Krogh, M., Angeletti, R., Pozza, G., Sorgato, M. C., Peter James & Andrighetto, I., 2011, In : Journal of Proteome Research. 10, 6, p. 2744-2757

    Research output: Contribution to journalArticle

  30. Protein Expression Profiling of Formalin-Fixed Paraffin-Embedded Tissue Using Recombinant Antibody Microarrays

    Pauly, F., Dexlin Mellby, L., Sara Ek, Mats Ohlin, Olsson, N., Karin Jirström, Michael Dictor, Schoenmakers, S., Carl Borrebaeck & Christer Wingren, 2013, In : Journal of Proteome Research. 12, 12, p. 5943-5953

    Research output: Contribution to journalArticle

  31. Proteome annotations and identifications of the human pulmonary fibroblast.

    Johan Malmström, Larsen, K., Lars Malmström, Ellen Tufvesson, Parker, K., Marchese, J., Williamson, B., Hattan, S., Patterson, D., Martin, S., Graber, A., Juhasz, H. P., Gunilla Westergren-Thorsson & György Marko-Varga, 2004, In : Journal of Proteome Research. 3, 3, p. 525-537

    Research output: Contribution to journalArticle

  32. Proteomic investigation of glioblastoma cell lines treated with wild-type p53 and cytotoxic chemotherapy demonstrates an association between galectin-1 and p53 expression

    Puchades, M., Carol L Nilsson, Emmett, M. R., Aldape, K. D., Ji, Y., Lang, F., Liu, T-J. & Conrad, C. A., 2007 Feb, In : Journal of Proteome Research. 6, 2, p. 869-75 7 p.

    Research output: Contribution to journalArticle

  33. Proteomic profiling of plasma in Huntington's disease reveals neuroinflammatory activation and biomarker candidates

    Dalrymple, A., Wild, E. J., Joubert, R., Sathasivam, K., Bjorkqvist, M., Åsa Petersén, Jackson, G. S., Isaacs, J. D., Kristiansen, M., Bates, G. P., Leavitt, B. R., Keir, G., Ward, M. & Tabrizi, S. J., 2007, In : Journal of Proteome Research. 6, 7, p. 2833-2840

    Research output: Contribution to journalArticle

  34. Proteomics and disease - The challenges for technology and discovery

    György Marko-Varga & Fehniger, TE., 2004, In : Journal of Proteome Research. 3, 2, p. 167-178

    Research output: Contribution to journalArticle

  35. Proteomics and leukocytes: an approach to understanding potential molecular mechanisms of inflammatory responses.

    Wang, X., Zhao, H. & Roland Andersson, 2004, In : Journal of Proteome Research. 3, 5, p. 921-929

    Research output: Contribution to journalReview article

  36. Proteomic variation is as large within as between strawberry varieties

    Alm, R., Ekefjard, A., Krogh, M., Jari Häkkinen & Cecilia Emanuelsson, 2007, In : Journal of Proteome Research. 6, 8, p. 3011-3020

    Research output: Contribution to journalArticle

  37. Quantification of Human Kallikrein-2 in Clinical Samples by Selected Reaction Monitoring

    Végvári, Á., Sjödin, K., Melinda Rezeli & György Marko-Varga, 2013, In : Journal of Proteome Research. 12, 10, p. 4612-4616

    Research output: Contribution to journalArticle

  38. Quantification of Membrane Proteins Using Nonspecific Protease Digestions

    Bendz, M., Carlsson Möller, M., Arrigoni, G., Wåhlander, Å., Stella, R., Cappadona, S., Fredrik Levander, Lars Hederstedt & Peter James, 2009, In : Journal of Proteome Research. 8, 12, p. 5666-5673

    Research output: Contribution to journalArticle

  39. Quantitation of 87 Proteins by nLC-MRM/MS in Human Plasma: Workflow for Large-Scale Analysis of Biobank Samples

    Melinda Rezeli, Sjödin, K., Henrik Lindberg, Olof Gidlöf, Lindahl, B., Jernberg, T., Spaak, J., David Erlinge & György Marko-Varga, 2017 Sep 1, In : Journal of Proteome Research. 16, 9, p. 3242-3254 13 p.

    Research output: Contribution to journalArticle

  40. Quantitative Label-Free Phosphoproteomics of Six Different Life Stages of the Late Blight Pathogen Phytophthora infestans Reveals Abundant Phosphorylation of Members of the CRN Effector Family

    Resjo, S., Ali, A., Meijer, H. J. G., Seidl, M. F., Snel, B., Sandin, M., Fredrik Levander, Govers, F. & Andreasson, E., 2014, In : Journal of Proteome Research. 13, 4, p. 1848-1859

    Research output: Contribution to journalArticle