Journal of Proteome Research, 1535-3893

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  1. 14-3-3 expression in denervated hippocampus after entorhinal cortex lesion assessed by culture-derived isotope tags in quantitative proteomics

    Sihlbom, C., Wilhelmsson, U., Li, L., Carol L Nilsson & Pekny, M., 2007 Sep, In : Journal of Proteome Research. 6, 9, p. 3491-3500 10 p.

    Research output: Contribution to journalArticle

  2. A Clinician View and Experience of Proteomic Studies in the Light of Lung Cancer in Japanese Healthcare

    Kato, H., Nishimura, T., Hirano, T., Nomura, M., Tojo, H., Fujii, K., Kawamura, T., Mikami, S., Kihara, M., Bando, Y., Tsuboi, M., Ikeda, N. & György Marko-Varga, 2011, In : Journal of Proteome Research. 10, 1, p. 51-57

    Research output: Contribution to journalDebate/Note/Editorial

  3. A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery

    Martin Sjöström, Ossola, R., Breslin, T., Rinner, O., Malmstroem, L., Schmidt, A., Aebersold, R., Johan Malmström & Emma Niméus, 2015, In : Journal of Proteome Research. 14, 7, p. 2807-2818

    Research output: Contribution to journalArticle

  4. AFFIRM – a multiplexed immunoaffinity platform that combines recombinant antibody fragments and LC-SRM analysis

    Säll, A., Carlsson, F., Olsson, N., Christer Wingren, Mats Ohlin, Persson, H. & Waldemarson, S., 2014, In : Journal of Proteome Research. 13, 12, p. 5837-5847

    Research output: Contribution to journalArticle

  5. A First Step Toward Completion of a Genome-Wide Characterization of the Human Proteome.

    György Marko-Varga, Omenn, G. S., Paik, Y-K. & Hancock, W. S., 2013, In : Journal of Proteome Research. 12, 1, p. 1-5

    Research output: Contribution to journalArticle

  6. Altered chaperone and protein turnover regulators expression in cultured skin fibroblasts from type 1 diabetes mellitus with nephropathy

    Tessari, P., Puricelli, L., Iori, E., Arrigoni, G., Vedovato, M., Peter James, Coracina, C. & Millioni, R., 2007, In : Journal of Proteome Research. 6, 3, p. 976-986

    Research output: Contribution to journalArticle

  7. A modified database search strategy leads to improved identification of in vitro brominated peptides spiked into a complex proteomic sample

    Liu, H., Lichti, C. F., Mirfattah, B., Frahm, J. & Carol L Nilsson, 2013 Sep 6, In : Journal of Proteome Research. 12, 9, p. 4248-54 7 p.

    Research output: Contribution to journalArticle

  8. Analytical Validation Considerations of Multiplex Mass-Spectrometry-Based Proteomic Platforms for Measuring Protein Biomarkers

    Boja, E. S., Fehniger, T., Baker, M. S., György Marko-Varga & Rodriguez, H., 2014, In : Journal of Proteome Research. 13, 12, p. 5325-5332

    Research output: Contribution to journalDebate/Note/Editorial

  9. An Integrated Workflow for Multiplex CSF Proteomics and Peptidomics-Identification of Candidate Cerebrospinal Fluid Biomarkers of Alzheimer's Disease

    Holtta, M., Lennart Minthon, Oskar Hansson, Holmen-Larsson, J., Pike, I., Ward, M., Kuhn, K., Ruetschi, U., Zetterberg, H., Blennow, K. & Gobom, J., 2015, In : Journal of Proteome Research. 14, 2, p. 654-663

    Research output: Contribution to journalArticle

  10. A probabilistic treatment of the missing spot problem in 2D gel electrophoresis experiments

    Krogh, M., Celine Fernandez, Teilum, M., Bengtsson, S. & Peter James, 2007, In : Journal of Proteome Research. 6, 8, p. 3335-3343

    Research output: Contribution to journalArticle

  11. Aptamer microarray mediated capture and mass spectrometry identification of biomarker in serum samples.

    Ji-Young, A., Lee, S. W., Kang, H. S., Jo, M., Lee, D-K., Thomas Laurell & Kim, S., 2010, In : Journal of Proteome Research. 9, 11, p. 5568-5573

    Research output: Contribution to journalArticle

  12. Aqueous two-phase partitioning for proteomic monitoring of cell surface biomarkers in human peripheral blood mononuclear cells

    Everberg, H., Peterson Wulff, R., Rak, S., Folke Tjerneld & Cecilia Emanuelsson, 2006, In : Journal of Proteome Research. 5, 5, p. 1168-1175

    Research output: Contribution to journalArticle

  13. Assessment of Peptide Chemical Modifications on the Development of an Accurate and Precise Multiplex Selected Reaction Monitoring Assay for Apolipoprotein E Isoforms

    Martinez-Morillo, E., Nielsen, H., Batruch, I., Drabovich, A. P., Begcevic, I., Lopez, M. F., Lennart Minthon, Bu, G., Mattsson, N., Portelius, E., Oskar Hansson & Diamandis, E. P., 2014, In : Journal of Proteome Research. 13, 2, p. 1077-1087

    Research output: Contribution to journalArticle

  14. Automated PreScan function for scanning fluorescently stained 2D-PAGE gels

    Bäck, P., Waldemarson, S. & Peter James, 2005, In : Journal of Proteome Research. 4, 5, p. 1511-1515

    Research output: Contribution to journalArticle

  15. Automated Selected Reaction Monitoring Software for Accurate Label-Free Protein Quantification.

    Teleman, J., Christofer Karlsson, Waldemarson, S., Hansson, K. M., Peter James, Johan Malmström & Fredrik Levander, 2012, In : Journal of Proteome Research. 11, 7, p. 3766-3773

    Research output: Contribution to journalArticle

  16. Automated Workflow for Large-Scale Selected Reaction Monitoring Experiments

    Malmstrom, L., Johan Malmström, Selevsek, N., Rosenberger, G. & Aebersold, R., 2012, In : Journal of Proteome Research. 11, 3, p. 1644-1653

    Research output: Contribution to journalArticle

  17. Automating gel image acquisition

    Bäck, P., Nagard, F., Bolmsjö, G., Waldemarson, S. & Peter James, 2003, In : Journal of Proteome Research. 2, 6, p. 662-664

    Research output: Contribution to journalArticle

  18. Automating MALDI Sample Plate Loading

    Andersson, T., Johansson, M., Bolmsjö, G. & Peter James, 2007, In : Journal of Proteome Research. 6, 2, p. 894-896

    Research output: Contribution to journalArticle

  19. Biology/Disease-Driven Initiative on Protein-Aggregation Diseases of the Human Proteome Project: Goals and Progress to Date

    Boersema, P. J., Melnik, A., Hazenberg, B. P. C., Melinda Rezeli, György Marko-Varga, Kamiie, J., Portelius, E., Blennow, K., Zubarev, R. A., Polymenidou, M. & Picotti, P., 2018 Dec 7, In : Journal of Proteome Research. 17, 12, p. 4072-4084

    Research output: Contribution to journalArticle

  20. Biorepository Regulatory Frameworks: Building Parallel Resources That Both Promote Scientific Investigation and Protect Human Subjects

    György Marko-Varga, Baker, M. S., Boja, E. S., Rodriguez, H. & Fehniger, T., 2014, In : Journal of Proteome Research. 13, 12, p. 5319-5324

    Research output: Contribution to journalDebate/Note/Editorial

  21. Blood Metabolic Signatures of Body Mass Index: A Targeted Metabolomics Study in the EPIC Cohort

    Carayol, M., Leitzmann, M. F., Ferrari, P., Zamora-Ros, R., Achaintre, D., Stepien, M., Schmidt, J. A., Travis, R. C., Overvad, K., Tjønneland, A., Hansen, L., Kaaks, R., Kühn, T., Boeing, H., Bachlechner, U., Trichopoulou, A., Bamia, C., Palli, D., Agnoli, C., Tumino, R. & 18 othersVineis, P., Panico, S., Quirós, J. R., Sánchez-Cantalejo, E., Huerta, J. M., Ardanaz, E., Arriola, L., Agudo, A., Nilsson, J., Olle Melander, Bueno de Mesquita, B., Peeters, P. H., Wareham, N., Khaw, K-T., Jenab, M., Key, T. J., Scalbert, A. & Rinaldi, S., 2017 Sep 1, In : Journal of Proteome Research. 16, 9, p. 3137-3146 10 p.

    Research output: Contribution to journalArticle

  22. Blood Plasma Reference Material – A Global Resource for Proteomic Research

    Johan Malm, Danmyr, P., Nilsson, R., Roger Appelqvist, Végvári, Á. & György Marko-Varga, 2013, In : Journal of Proteome Research. 12, 7, p. 3087-3092

    Research output: Contribution to journalArticle

  23. Characterization of the Lipid Droplet Proteome of a Clonal Insulin-producing β-Cell Line (INS-1 832/13).

    Sara Larsson, Resjö, S., Maria Gomez, James, P. & Cecilia Holm, 2012, In : Journal of Proteome Research. 11, 2, p. 1264-1273

    Research output: Contribution to journalArticle

  24. Characterization of the outer membrane protein profile from disease-related Helicobacter pylori isolates by subcellular fractionation and nano-LC FT-ICR MS analysis

    Carlsohn, E., Nyström, J., Karlsson, H., Svennerholm, A-M. & Carol L Nilsson, 2006 Nov, In : Journal of Proteome Research. 5, 11, p. 3197-204 8 p.

    Research output: Contribution to journalArticle

  25. Chromosome 19 Annotations with Disease Speciation - A First Report from the Global Research Consortium

    Nilsson, C. L., Berven, F., Selheim, F., Liu, H., Moskal, J. F., Kroes, R. A., Sulman, E. P., Conrad, C. A., Lang, F. F., Andrén, P. E., Nilsson, A., Carlsohn, E., Lilja, H., Malm, J., Fenyö, D., Subramaniyam, D., Wang, X., Gonzales-Gonzales, M., Dasilva, N., Diez, P. & 11 othersFuentes, M., Végvári, Á., Sjödin, K., Charlotte Welinder, Thomas Laurell, Fehniger, T., Henrik Lindberg, Melinda Rezeli, Edula, G., Hober, S. & György Marko-Varga, 2013, In : Journal of Proteome Research. 12, 1, p. 135-150

    Research output: Contribution to journalArticle

  26. Comparative Time-Dependent Analysis of Potential Inflammation Biomarkers in Lymphoma-Bearing SJL Mice.

    Monica Kåredal, Bhat, V., Babu, I., Wishnok, J. & Tannenbaum, S., 2007, In : Journal of Proteome Research. 6, 5, p. 1735-1744

    Research output: Contribution to journalArticle

  27. Comparison of MS/MS methods for protein identification from 2D-PAGE

    Arrigoni, G., Celine Fernandez, Cecilia Holm, Scigelova, M. & Peter James, 2006, In : Journal of Proteome Research. 5, 9, p. 2294-2300

    Research output: Contribution to journalArticle

  28. Confirmation of Protein Biomarkers of Corticosteroids Treatment in Veal Calves Sampled under Field Conditions

    Stella, R., Arrigoni, G., Biancotto, G., Krogh, M., Vascellari, M., Lega, F., Pozza, G., Angeletti, R., Andrighetto, I. & Peter James, 2014, In : Journal of Proteome Research. 13, 4, p. 1794-1799

    Research output: Contribution to journalArticle

  29. Contribution of Antibody-based Protein Profiling to the Human Chromosome-centric Proteome Project (C-HPP)

    Fagerberg, L., Oksvold, P., Skogs, M., Algenas, C., Lundberg, E., Ponten, F., Sivertsson, A., Odeberg, J., Klevebring, D., Kampf, C., Asplund, A., Sjostedt, E., Szigyarto, C. A-K., Edqvist, P-H., Olsson, I., Rydberg, U., Hudson, P., Takanen, J. O., Berling, H., Bjorling, L. & 12 othersTegel, H., Rockberg, J., Nilsson, P., Navani, S., Karin Jirström, Mulder, J., Schwenk, J. M., Zwahlen, M., Hober, S., Forsberg, M., von Feilitzen, K. & Uhlen, M., 2013, In : Journal of Proteome Research. 12, 6, p. 2439-2448

    Research output: Contribution to journalArticle

  30. Coomassie Staining as Loading Control in Western Blot Analysis

    Charlotte Welinder & Lars Ekblad, 2011, In : Journal of Proteome Research. 10, 3, p. 1416-1419

    Research output: Contribution to journalArticle

  31. Critical Comparison of Multidimensional Separation Methods for Increasing Protein Expression Coverage

    Antberg, L., Cifani, P., Sandin, M., Fredrik Levander & Peter James, 2012, In : Journal of Proteome Research. 11, 5, p. 2644-2652

    Research output: Contribution to journalArticle

  32. Data Processing Has Major Impact on the Outcome of Quantitative Label-Free LC-MS Analysis

    Chawade, A., Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2015, In : Journal of Proteome Research. 14, 2, p. 676-687

    Research output: Contribution to journalArticle

  33. Design of recombinant antibody microarrays for cell surface membrane proteomics

    Dexlin Mellby, L., Ingvarsson, J., Frendeus, B., Carl Borrebaeck & Christer Wingren, 2008, In : Journal of Proteome Research. 7, 1, p. 319-327

    Research output: Contribution to journalArticle

  34. Design of recombinant antibody microarrays for serum protein profiling: Targeting of complement proteins

    Ingvarsson, J., Larsson, A., Sjöholm, A., Lennart Truedsson, Bo Jansson, Carl Borrebaeck & Christer Wingren, 2007, In : Journal of Proteome Research. 6, 9, p. 3527-3536

    Research output: Contribution to journalArticle

  35. Detection and identification of protein isoforms using cluster analysis of MALDI-MS mass spectra

    Alm, R., Johansson, P., Hjerno, K., Cecilia Emanuelsson, Markus Ringnér & Jari Häkkinen, 2006, In : Journal of Proteome Research. 5, 4, p. 785-792

    Research output: Contribution to journalArticle

  36. Determination of Phosphorylation Sites in the DivIVA Cytoskeletal Protein of Streptomyces coelicolor by Targeted LC-MS/MS

    Saalbach, G., Hempel, A. M., Vigouroux, M., Klas Flärdh, Buttner, M. J. & Naldrett, M. J., 2013, In : Journal of Proteome Research. 12, 9, p. 4187-4192

    Research output: Contribution to journalArticle

  37. Development of Phage-Based Antibody Fragment Reagents for Affinity Enrichment of Bacterial Immunoglobulin G Binding Proteins.

    Säll, A., Sjöholm, K., Waldemarson, S., Lotta Happonen, Christofer Karlsson, Persson, H. & Johan Malmström, 2015, In : Journal of Proteome Research. 14, 11, p. 4704-4713

    Research output: Contribution to journalArticle

  38. Development of reagents for differential protein quantitation by subtractive parent (precursor) ion scanning

    Wåhlander, Å., Arrigoni, G., Wårell, K., Fredrik Levander, Palmgren, R., Maloisel, J-L., Busson, P. & Peter James, 2007, In : Journal of Proteome Research. 6, 3, p. 1101-1113

    Research output: Contribution to journalArticle

  39. Dinosaur: A Refined Open-Source Peptide MS Feature Detector

    Teleman, J., Chawade, A., Sandin, M., Fredrik Levander & Johan Malmström, 2016 Jul 1, In : Journal of Proteome Research. 15, 7, p. 2143-2151 9 p.

    Research output: Contribution to journalArticle

  40. Discovery of a novel B-Raf fusion protein related to c-Met drug resistance

    Dillon, R., Carol L Nilsson, Shi, S. D-H., Lee, N. V., Krastins, B. & Greig, M. J., 2011 Nov 4, In : Journal of Proteome Research. 10, 11, p. 5084-94 11 p.

    Research output: Contribution to journalArticle

  41. Discovery of Biomarker Candidates within Disease by Protein Profiling: Principles and Concepts.

    György Marko-Varga, Lindberg, H., Claes-Göran Löfdahl, Jönsson, P., Hansson, L., Dahlbäck, M., Lindquist, E., Johansson, L., Foster, M. & Fehniger, T., 2005, In : Journal of Proteome Research. 4, 4, p. 1200-1212

    Research output: Contribution to journalArticle

  42. Elucidating the Molecular Composition of Cartilage by Proteomics

    Hsueh, M. F., Khabut, A., Sven Kjellström, Patrik Önnerfjord & Kraus, V. B., 2016 Feb 5, In : Journal of Proteome Research. 15, 2, p. 374-388 15 p.

    Research output: Contribution to journalArticle

  43. ENSAM: Europium Nanoparticles for Signal Enhancement of Antibody Microarrays on Nanoporous Silicon.

    Järås, K., Tajudin, A., Ressine, A., Soukka, T., György Marko-Varga, Anders Bjartell, Johan Malm, Thomas Laurell & Hans Lilja, 2008, In : Journal of Proteome Research. 7, p. 1308-1314

    Research output: Contribution to journalArticle

  44. ESI-MS/MS and MALDI-IMS Localization Reveal Alterations in Phosphatidic Acid, Diacylglycerol, and DHA in Glioma Stem Cell Xenografts

    Wildburger, N. C., Wood, P. L., Gumin, J., Lichti, C. F., Emmett, M. R., Lang, F. & Carol L Nilsson, 2015 Jun 5, In : Journal of Proteome Research. 14, 6, p. 2511-9 9 p.

    Research output: Contribution to journalArticle

  45. Experimental Models to Study Drug Distributions in Tissue Using MALDI Mass Spectrometry

    Végvári, Á., Fehniger, T. E., Melinda Rezeli, Thomas Laurell, Döme, B., Jansson, B., Charlotte Welinder & György Marko-Varga, 2013, In : Journal of Proteome Research. 12, 12, p. 5626-5633

    Research output: Contribution to journalArticle

  46. Exploring the context of the lung proteome within the airway mucosa following allergen challenge.

    Fehniger, T. E., Sato-Folatre, J-G., Johan Malmström, Berglund, M., Lindberg, C., Brange, C., Lindberg, H. & Marko-Varga, G., 2004, In : Journal of Proteome Research. 3, 2, p. 307-320

    Research output: Contribution to journalReview article

  47. Expression of a Core 3 Disialyl-Le(x) Hexasaccharide in Human Colorectal Cancers: A Potential Marker of Malignant Transformation in Colon.

    Robbe-Masselot, C., Herrmann, A., Maes, E., Ingemar Carlstedt, Michalski, J-C. & Capon, C., 2009, In : Journal of Proteome Research.

    Research output: Contribution to journalArticle

  48. FK506, an Immunosuppressive Drug, Induces Autophagy by Binding to the V-ATPase Catalytic Subunit A in Neuronal Cells

    Kim, D., Hwang, H. Y., Kim, Y. J., Lee, J. Y., Yoo, J. S., György Marko-Varga & Kwon, H. J., 2017 Jan 6, In : Journal of Proteome Research. 16, 1, p. 55-64 10 p.

    Research output: Contribution to journalArticle

  49. Four Areas of Engagement Requiring Strengthening in Modern Proteomics Today.

    Fehniger, T., Boja, E. S., Rodriguez, H., Baker, M. S. & György Marko-Varga, 2014, In : Journal of Proteome Research. 13, 12, p. 5310-5318

    Research output: Contribution to journalDebate/Note/Editorial

  50. Genome-wide Proteomics, Chromosome-centric Human Proteome Project (C-HPP), Part II

    Paik, Y-K., Omenn, G. S., Thongboonkerd, V., György Marko-Varga & Hancock, W. S., 2014, In : Journal of Proteome Research. 13, 1, p. 1-4

    Research output: Contribution to journalDebate/Note/Editorial

  51. Genomics, transcriptomics, and peptidomics of Daphnia pulex neuropeptides and protein hormones

    Dircksen, H., Neupert, S., Predel, R., Verleyen, P., Huybrechts, J., Strauss, J., Hauser, F., Stafflinger, E., Schneider, M., Pauwels, K., Schoofs, L. & Grimmelikhuijzen, C. J. P., 2011 Oct 7, In : Journal of Proteome Research. 10, 10, p. 4478-4504

    Research output: Contribution to journalArticle

  52. Glycomic and transcriptomic response of GSC11 glioblastoma stem cells to STAT3 phosphorylation inhibition and serum-induced differentiation

    He, H., Carol L Nilsson, Emmett, M. R., Marshall, A. G., Kroes, R. A., Moskal, J. R., Ji, Y., Colman, H., Priebe, W., Lang, F. & Conrad, C. A., 2010 May 7, In : Journal of Proteome Research. 9, 5, p. 2098-2108 11 p.

    Research output: Contribution to journalArticle

  53. Hunting for Protein Markers of Hypoxia by Combining Plasma Membrane Enrichment with a New Approach to Membrane Protein Analysis

    Cifani, P., Bendz, M., Wårell, K., Hansson, K. M., Fredrik Levander, Sandin, M., Krogh, M., Ovenberger, M., Fredlund, E., Marica Vaapil, Alexander Pietras, Sven Påhlman & Peter James, 2011, In : Journal of Proteome Research. 10, 4, p. 1645-1656

    Research output: Contribution to journalArticle

  54. Hypothermia Affects Translocation of Numerous Cytoplasmic Proteins Following Global Cerebral Ischemia.

    Teilum, M., Krogh, M., Tadeusz Wieloch & Gustav Mattiasson, 2007, In : Journal of Proteome Research. 6, 7, p. 2822-2832

    Research output: Contribution to journalArticle

  55. Identification of a Novel Autoimmune Peptide Epitope of Prostein in Prostate Cancer

    Pin, E., Henjes, F., Hong, M. G., Wiklund, F., Magnusson, P., Anders Bjartell, Uhlén, M., Nilsson, P. & Schwenk, J. M., 2017 Jan 6, In : Journal of Proteome Research. 16, 1, p. 204-216 13 p.

    Research output: Contribution to journalArticle

  56. Improvements in Mass Spectrometry Assay Library Generation for Targeted Proteomics

    Teleman, J., Hauri, S. & Johan Malmström, 2017 Jul 7, In : Journal of Proteome Research. 16, 7, p. 2384-2392 9 p.

    Research output: Contribution to journalArticle

  57. Inflammatory response in white adipose tissue in the non-obese hormone-sensitive lipase null mouse model.

    Ola Hansson, Ström, K., Güner, N., Nils Wierup, Sundler, F., Höglund, P. & Cecilia Holm, 2006, In : Journal of Proteome Research. 5, 7, p. 1701-1710

    Research output: Contribution to journalArticle

  58. Integrated Chromosome 19 Transcriptomic and Proteomic Datasets Derived from Six Glioma-Derived Cancer Stem Cell Lines

    Lichti, C., Liu, H., Shavkunov, A. S., Mostovenko, E., Sulman, E. P., Ezhilarasan, R., Wang, Q., Kroes, R., Moskal, J. C., Fenyö, D., Oksuz, B. A., Conrad, C. A., Lang, F. F., Berven, F. S., Végvári, Á., Melinda Rezeli, György Marko-Varga, Hober, S. & Nilsson, C. L., 2014, In : Journal of Proteome Research. 13, 1, p. 191-199

    Research output: Contribution to journalArticle

  59. Integrated protein microchip assay with dual fluorescent- and MALDI read-out

    Finnskog, D., Ressine, A., Thomas Laurell & György Marko-Varga, 2004, In : Journal of Proteome Research. 3, 5, p. 988-994

    Research output: Contribution to journalArticle

  60. Integrated Transcriptomic and Glycomic Profiling of Glioma Stem Cell Xenografts

    Wildburger, N. C., Zhou, S., Zacharias, L. G., Kroes, R. A., Moskal, J. R., Schmidt, M., Mirzaei, P., Gumin, J., Lang, F., Mechref, Y. & Carol Nilsson, 2015 Sep 4, In : Journal of Proteome Research. 14, 9, p. 3932-9 8 p.

    Research output: Contribution to journalArticle

  61. Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project

    Diez, P., Droste, C., Degano, R. M., Gonzalez-Munoz, M., Ibarrola, N., Perez-Andres, M., Garin-Muga, A., Segura, V., György Marko-Varga, LaBaer, J., Orfao, A., Corrales, F. J., De Las Rivas, J. & Fuentes, M., 2015, In : Journal of Proteome Research. 14, 9, p. 3530-3540

    Research output: Contribution to journalArticle

  62. In vitro Transcription/Translation System: A Versatile Tool in the Search for Missing Proteins

    Horvatovich, P., Végvári, Á., Saul, J., Park, J., Qiu, J., Syring, M., Pirrotte, P., Petritis, K., Tegeler, T., Aziz, M., Fuentes, M., Diez, P., Gonzalez-Gonzalez, M., Ibarrola, N., Droste, C., De Las Rivas, J., Gil, C., Clemente, F., Hernaez, M. L., Corrales, F. & 6 othersNilsson, C., Berven, F., Bischoff, R., Fehniger, T., LaBaer, J. & György Marko-Varga, 2015, In : Journal of Proteome Research. 14, 9, p. 3441-3451

    Research output: Contribution to journalArticle

  63. Large-Scale Proteomics Analysis of Human Ovarian Cancer for Biomarkers

    Bengtsson, S., Krogh, M., Al-Khalili Szigyarto, C., Uhlen, M., Schedvins, K., Silfversward, C., Linder, S., Auer, G., Alaiya, A. & Peter James, 2007, In : Journal of Proteome Research. 6, 4, p. 1440-1450

    Research output: Contribution to journalArticle

  64. Linking proteins to disease processes

    György Marko-Varga & Fehniger, T. E., 2004, In : Journal of Proteome Research. 3, 2, p. 155-155

    Research output: Contribution to journalDebate/Note/Editorial

  65. Mass Spectrometry Analysis of a Protein Kinase CK2 beta Subunit Interactome Isolated from Mouse Brain by Affinity Chromatography.

    Arrigoni, G., Pagano, M., Sarno, S., Cesaro, L., Peter James & Pinna, L., 2008, In : Journal of Proteome Research. 7, 3, p. 990-1000

    Research output: Contribution to journalArticle

  66. Metabolomic and proteomic analysis of a clonal insulin-producing beta-cell line (INS-1 832/13).

    Celine Fernandez, Krus, U., Hallgard, E., Peter Spégel, Cecilia Holm, Krogh, M., Wårell, K., Peter James & Hindrik Mulder, 2008, In : Journal of Proteome Research. 7, 1, p. 400-411

    Research output: Contribution to journalArticle

  67. Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors.

    Cifani, P., Kirik, U., Waldemarson, S. & Peter James, 2015, In : Journal of Proteome Research. 14, 7, p. 2819-2827

    Research output: Contribution to journalArticle

  68. Multimodel Pathway Enrichment Methods for Functional Evaluation of Expression Regulation.

    Kirik, U., Cifani, P., Albrekt, A-S., Malin Lindstedt, Anders Heyden & Fredrik Levander, 2012, In : Journal of Proteome Research. 11, 5, p. 2955-2967

    Research output: Contribution to journalArticle

  69. Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets

    Chawade, A., Alexandersson, E. & Fredrik Levander, 2014, In : Journal of Proteome Research. 13, 6, p. 3114-3120

    Research output: Contribution to journalArticle

  70. Omics Analyses Reveal a Potential Link between Hormone-Sensitive Lipase and Polyamine Metabolism.

    Fernandez, C., Krogh, M., Wårell, K., Alm, K., Stina Oredsson, Lo Persson, Peter James & Cecilia Holm, 2009, In : Journal of Proteome Research. 8, p. 5008-5019

    Research output: Contribution to journalArticle

  71. Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis

    Johan Malmström, Lee, H., Nesvizhskii, A. I., Shteynberg, D., Mohanty, S., Brunner, E., Ye, M., Weber, G., Eckerskorn, C. & Aebersold, R., 2006 Sep, In : Journal of Proteome Research. 5, 9, p. 2241-9 9 p.

    Research output: Contribution to journalArticle

  72. Prefractionation of cerebrospinal fluid to enhance glycoprotein concentration prior to structural determination with FT-ICR mass spectrometry

    Sihlbom, C., Davidsson, P. & Carol L Nilsson, 2005 Dec 13, In : Journal of Proteome Research. 4, 6, p. 2294-301 8 p.

    Research output: Contribution to journalArticle

  73. Protein Expression Changes in Ovarian Cancer during the Transition from Benign to Malignant.

    Waldemarson, S., Krogh, M., Alaiya, A., Kirik, U., Schedvins, K., Auer, G., Hansson, K. M., Ossola, R., Aebersold, R., Lee, H., Johan Malmström & Peter James, 2012, In : Journal of Proteome Research. 11, 5, p. 2876-2889

    Research output: Contribution to journalArticle

  74. Protein Expression Changes in Skeletal Muscle in Response to Growth Promoter Abuse in Beef Cattle

    Stella, R., Biancotto, G., Krogh, M., Angeletti, R., Pozza, G., Sorgato, M. C., Peter James & Andrighetto, I., 2011, In : Journal of Proteome Research. 10, 6, p. 2744-2757

    Research output: Contribution to journalArticle

  75. Protein Expression Profiling of Formalin-Fixed Paraffin-Embedded Tissue Using Recombinant Antibody Microarrays

    Pauly, F., Dexlin Mellby, L., Sara Ek, Mats Ohlin, Olsson, N., Karin Jirström, Michael Dictor, Schoenmakers, S., Carl Borrebaeck & Christer Wingren, 2013, In : Journal of Proteome Research. 12, 12, p. 5943-5953

    Research output: Contribution to journalArticle

  76. Proteome annotations and identifications of the human pulmonary fibroblast.

    Johan Malmström, Larsen, K., Lars Malmström, Ellen Tufvesson, Parker, K., Marchese, J., Williamson, B., Hattan, S., Patterson, D., Martin, S., Graber, A., Juhasz, H. P., Gunilla Westergren-Thorsson & György Marko-Varga, 2004, In : Journal of Proteome Research. 3, 3, p. 525-537

    Research output: Contribution to journalArticle

  77. Proteomic investigation of glioblastoma cell lines treated with wild-type p53 and cytotoxic chemotherapy demonstrates an association between galectin-1 and p53 expression

    Puchades, M., Carol L Nilsson, Emmett, M. R., Aldape, K. D., Ji, Y., Lang, F., Liu, T-J. & Conrad, C. A., 2007 Feb, In : Journal of Proteome Research. 6, 2, p. 869-75 7 p.

    Research output: Contribution to journalArticle

  78. Proteomic profiling of plasma in Huntington's disease reveals neuroinflammatory activation and biomarker candidates

    Dalrymple, A., Wild, E. J., Joubert, R., Sathasivam, K., Bjorkqvist, M., Åsa Petersén, Jackson, G. S., Isaacs, J. D., Kristiansen, M., Bates, G. P., Leavitt, B. R., Keir, G., Ward, M. & Tabrizi, S. J., 2007, In : Journal of Proteome Research. 6, 7, p. 2833-2840

    Research output: Contribution to journalArticle

  79. Proteomics and disease - The challenges for technology and discovery

    György Marko-Varga & Fehniger, TE., 2004, In : Journal of Proteome Research. 3, 2, p. 167-178

    Research output: Contribution to journalArticle

  80. Proteomics and leukocytes: an approach to understanding potential molecular mechanisms of inflammatory responses.

    Wang, X., Zhao, H. & Roland Andersson, 2004, In : Journal of Proteome Research. 3, 5, p. 921-929

    Research output: Contribution to journalReview article

  81. Proteomic variation is as large within as between strawberry varieties

    Alm, R., Ekefjard, A., Krogh, M., Jari Häkkinen & Cecilia Emanuelsson, 2007, In : Journal of Proteome Research. 6, 8, p. 3011-3020

    Research output: Contribution to journalArticle

  82. Quantification of Human Kallikrein-2 in Clinical Samples by Selected Reaction Monitoring

    Végvári, Á., Sjödin, K., Melinda Rezeli & György Marko-Varga, 2013, In : Journal of Proteome Research. 12, 10, p. 4612-4616

    Research output: Contribution to journalArticle

  83. Quantification of Membrane Proteins Using Nonspecific Protease Digestions

    Bendz, M., Carlsson Möller, M., Arrigoni, G., Wåhlander, Å., Stella, R., Cappadona, S., Fredrik Levander, Lars Hederstedt & Peter James, 2009, In : Journal of Proteome Research. 8, 12, p. 5666-5673

    Research output: Contribution to journalArticle

  84. Quantitation of 87 Proteins by nLC-MRM/MS in Human Plasma: Workflow for Large-Scale Analysis of Biobank Samples

    Melinda Rezeli, Sjödin, K., Henrik Lindberg, Olof Gidlöf, Lindahl, B., Jernberg, T., Spaak, J., David Erlinge & György Marko-Varga, 2017 Sep 1, In : Journal of Proteome Research. 16, 9, p. 3242-3254 13 p.

    Research output: Contribution to journalArticle

  85. Quantitative Label-Free Phosphoproteomics of Six Different Life Stages of the Late Blight Pathogen Phytophthora infestans Reveals Abundant Phosphorylation of Members of the CRN Effector Family

    Resjo, S., Ali, A., Meijer, H. J. G., Seidl, M. F., Snel, B., Sandin, M., Fredrik Levander, Govers, F. & Andreasson, E., 2014, In : Journal of Proteome Research. 13, 4, p. 1848-1859

    Research output: Contribution to journalArticle

  86. Quantitative phosphoproteomic analysis of the STAT3/IL-6/HIF1alpha signaling network: an initial study in GSC11 glioblastoma stem cells

    Carol L Nilsson, Dillon, R., Devakumar, A., Shi, S. D-H., Greig, M. J., Rogers, J. C., Krastins, B., Rosenblatt, M., Kilmer, G., Major, M., Kaboord, B. J., Sarracino, D., Rezai, T., Prakash, A., Lopez, M., Ji, Y., Priebe, W., Lang, F., Colman, H. & Conrad, C. A., 2010 Jan, In : Journal of Proteome Research. 9, 1, p. 430-443 14 p.

    Research output: Contribution to journalArticle

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