Journal of Proteome Research, 1535-3893

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  1. 2019
  2. 2018
  3. Biology/Disease-Driven Initiative on Protein-Aggregation Diseases of the Human Proteome Project: Goals and Progress to Date

    Boersema, P. J., Melnik, A., Hazenberg, B. P. C., Melinda Rezeli, György Marko-Varga, Kamiie, J., Portelius, E., Blennow, K., Zubarev, R. A., Polymenidou, M. & Picotti, P., 2018 Dec 7, In : Journal of Proteome Research. 17, 12, p. 4072-4084

    Research output: Contribution to journalArticle

  4. 2017
  5. Blood Metabolic Signatures of Body Mass Index: A Targeted Metabolomics Study in the EPIC Cohort

    Carayol, M., Leitzmann, M. F., Ferrari, P., Zamora-Ros, R., Achaintre, D., Stepien, M., Schmidt, J. A., Travis, R. C., Overvad, K., Tjønneland, A., Hansen, L., Kaaks, R., Kühn, T., Boeing, H., Bachlechner, U., Trichopoulou, A., Bamia, C., Palli, D., Agnoli, C., Tumino, R. & 18 othersVineis, P., Panico, S., Quirós, J. R., Sánchez-Cantalejo, E., Huerta, J. M., Ardanaz, E., Arriola, L., Agudo, A., Nilsson, J., Olle Melander, Bueno de Mesquita, B., Peeters, P. H., Wareham, N., Khaw, K-T., Jenab, M., Key, T. J., Scalbert, A. & Rinaldi, S., 2017 Sep 1, In : Journal of Proteome Research. 16, 9, p. 3137-3146 10 p.

    Research output: Contribution to journalArticle

  6. Quantitation of 87 Proteins by nLC-MRM/MS in Human Plasma: Workflow for Large-Scale Analysis of Biobank Samples

    Melinda Rezeli, Sjödin, K., Henrik Lindberg, Olof Gidlöf, Lindahl, B., Jernberg, T., Spaak, J., David Erlinge & György Marko-Varga, 2017 Sep 1, In : Journal of Proteome Research. 16, 9, p. 3242-3254 13 p.

    Research output: Contribution to journalArticle

  7. Improvements in Mass Spectrometry Assay Library Generation for Targeted Proteomics

    Teleman, J., Hauri, S. & Johan Malmström, 2017 Jul 7, In : Journal of Proteome Research. 16, 7, p. 2384-2392 9 p.

    Research output: Contribution to journalArticle

  8. FK506, an Immunosuppressive Drug, Induces Autophagy by Binding to the V-ATPase Catalytic Subunit A in Neuronal Cells

    Kim, D., Hwang, H. Y., Kim, Y. J., Lee, J. Y., Yoo, J. S., György Marko-Varga & Kwon, H. J., 2017 Jan 6, In : Journal of Proteome Research. 16, 1, p. 55-64 10 p.

    Research output: Contribution to journalArticle

  9. Identification of a Novel Autoimmune Peptide Epitope of Prostein in Prostate Cancer

    Pin, E., Henjes, F., Hong, M. G., Wiklund, F., Magnusson, P., Anders Bjartell, Uhlén, M., Nilsson, P. & Schwenk, J. M., 2017 Jan 6, In : Journal of Proteome Research. 16, 1, p. 204-216 13 p.

    Research output: Contribution to journalArticle

  10. The Immune System and the Proteome

    György Marko-Varga & LaBaer, J., 2017 Jan 6, In : Journal of Proteome Research. 16, 1, p. 1 1 p.

    Research output: Contribution to journalDebate/Note/Editorial

  11. 2016
  12. Dinosaur: A Refined Open-Source Peptide MS Feature Detector

    Teleman, J., Chawade, A., Sandin, M., Fredrik Levander & Johan Malmström, 2016 Jul 1, In : Journal of Proteome Research. 15, 7, p. 2143-2151 9 p.

    Research output: Contribution to journalArticle

  13. Targeted MS Assay Predicting Tamoxifen Resistance in Estrogen-Receptor-Positive Breast Cancer Tissues and Sera

    Tommaso De Marchi, Kuhn, E., Dekker, L. J. M., Stingl, C., Braakman, R. B. H., Opdam, M., Linn, S. C., Sweep, F. C. G. J., Span, P. N., Luider, T. M., Foekens, J. A., Martens, J. W. M., Carr, S. A. & Umar, A., 2016 Apr 1, In : Journal of Proteome Research. 15, 4, p. 1230-42 13 p.

    Research output: Contribution to journalArticle

  14. Elucidating the Molecular Composition of Cartilage by Proteomics

    Hsueh, M. F., Khabut, A., Sven Kjellström, Patrik Önnerfjord & Kraus, V. B., 2016 Feb 5, In : Journal of Proteome Research. 15, 2, p. 374-388 15 p.

    Research output: Contribution to journalArticle

  15. Targeted Proteomics Approach for Precision Plant Breeding

    Chawade, A., Alexandersson, E., Bengtsson, T., Andreasson, E. & Fredrik Levander, 2016 Feb 5, In : Journal of Proteome Research. 15, 2, p. 638-642 9 p.

    Research output: Contribution to journalArticle

  16. 2015
  17. Integrated Transcriptomic and Glycomic Profiling of Glioma Stem Cell Xenografts

    Wildburger, N. C., Zhou, S., Zacharias, L. G., Kroes, R. A., Moskal, J. R., Schmidt, M., Mirzaei, P., Gumin, J., Lang, F., Mechref, Y. & Carol Nilsson, 2015 Sep 4, In : Journal of Proteome Research. 14, 9, p. 3932-9 8 p.

    Research output: Contribution to journalArticle

  18. ESI-MS/MS and MALDI-IMS Localization Reveal Alterations in Phosphatidic Acid, Diacylglycerol, and DHA in Glioma Stem Cell Xenografts

    Wildburger, N. C., Wood, P. L., Gumin, J., Lichti, C. F., Emmett, M. R., Lang, F. & Carol L Nilsson, 2015 Jun 5, In : Journal of Proteome Research. 14, 6, p. 2511-9 9 p.

    Research output: Contribution to journalArticle

  19. A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery

    Martin Sjöström, Ossola, R., Breslin, T., Rinner, O., Malmstroem, L., Schmidt, A., Aebersold, R., Johan Malmström & Emma Niméus, 2015, In : Journal of Proteome Research. 14, 7, p. 2807-2818

    Research output: Contribution to journalArticle

  20. An Integrated Workflow for Multiplex CSF Proteomics and Peptidomics-Identification of Candidate Cerebrospinal Fluid Biomarkers of Alzheimer's Disease

    Holtta, M., Lennart Minthon, Oskar Hansson, Holmen-Larsson, J., Pike, I., Ward, M., Kuhn, K., Ruetschi, U., Zetterberg, H., Blennow, K. & Gobom, J., 2015, In : Journal of Proteome Research. 14, 2, p. 654-663

    Research output: Contribution to journalArticle

  21. Data Processing Has Major Impact on the Outcome of Quantitative Label-Free LC-MS Analysis

    Chawade, A., Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2015, In : Journal of Proteome Research. 14, 2, p. 676-687

    Research output: Contribution to journalArticle

  22. Development of Phage-Based Antibody Fragment Reagents for Affinity Enrichment of Bacterial Immunoglobulin G Binding Proteins.

    Säll, A., Sjöholm, K., Waldemarson, S., Lotta Happonen, Christofer Karlsson, Persson, H. & Johan Malmström, 2015, In : Journal of Proteome Research. 14, 11, p. 4704-4713

    Research output: Contribution to journalArticle

  23. Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project

    Diez, P., Droste, C., Degano, R. M., Gonzalez-Munoz, M., Ibarrola, N., Perez-Andres, M., Garin-Muga, A., Segura, V., György Marko-Varga, LaBaer, J., Orfao, A., Corrales, F. J., De Las Rivas, J. & Fuentes, M., 2015, In : Journal of Proteome Research. 14, 9, p. 3530-3540

    Research output: Contribution to journalArticle

  24. In vitro Transcription/Translation System: A Versatile Tool in the Search for Missing Proteins

    Horvatovich, P., Végvári, Á., Saul, J., Park, J., Qiu, J., Syring, M., Pirrotte, P., Petritis, K., Tegeler, T., Aziz, M., Fuentes, M., Diez, P., Gonzalez-Gonzalez, M., Ibarrola, N., Droste, C., De Las Rivas, J., Gil, C., Clemente, F., Hernaez, M. L., Corrales, F. & 6 othersNilsson, C., Berven, F., Bischoff, R., Fehniger, T., LaBaer, J. & György Marko-Varga, 2015, In : Journal of Proteome Research. 14, 9, p. 3441-3451

    Research output: Contribution to journalArticle

  25. Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors.

    Cifani, P., Kirik, U., Waldemarson, S. & Peter James, 2015, In : Journal of Proteome Research. 14, 7, p. 2819-2827

    Research output: Contribution to journalArticle

  26. Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project

    Horvatovich, P., Lundberg, E., Chen, Y-J., Sung, T-Y., He, F., Nice, E., Goode, R., Yu, S., Ranganathan, S., Baker, M., Domont, R., Valesquez, E., Li, D., Liu, S., Wang, Q., He, Q-Y., Menon, R., Guan, Y., Corrales, F., Segura, V. & 33 othersCasal, I., Pascual-Montano, A., Albar, J. P., Fuentes, M., Gonzalez-Gonzalez, M., Diez, P., Ibarolla, N., Degano, R., Mohammed, Y., Borchers, C., Urbani, A., Soggiu, A., Yamamoto, T., Archakov, A., Ponomarenko, E., Lisitsa, A., Lichti, C., Mostovenko, E., Kroes, R., Melinda Rezeli, Végvári, Á., Fehniger, T., Bischoff, R., Vizcaíno, J. A., Deutsch, E., Lane, L., Nilsson, C., György Marko-Varga, Omenn, G., Jeong, S-K., Cho, J-Y., Paik, Y-K. & Hancock, W., 2015, In : Journal of Proteome Research. 14, 9, p. 3415-3431

    Research output: Contribution to journalArticle

  27. Systematic Identification of Single Amino Acid Variants in Glioma Stem-Cell-Derived Chromosome 19 Proteins

    Lichti, C., Mostovenko, E., Wadsworth, P., Lynch, G., Pettitt, M., Sulman, E., Wang, Q., Lang, F., Melinda Rezeli, György Marko-Varga, Végvári, Á. & Nilsson, C., 2015, In : Journal of Proteome Research. 14, 2, p. 778-786

    Research output: Contribution to journalArticle

  28. Targeted Proteomic Analyses of Nasal Lavage Fluid in Persulfate-Challenged Hairdressers with Bleaching Powder-Associated Rhinitis

    Mörtstedt, H., Neserin Ali, Monica Kåredal, Jacobsson, H., Emelie Rietz, Diab, K., Jörn Nielsen, Jönsson, B. A. & Christian Lindh, 2015, In : Journal of Proteome Research. 14, 2, p. 860-873

    Research output: Contribution to journalArticle

  29. Use of ENCODE Resources to Characterize Novel Proteoforms and Missing Proteins in the Human Proteome

    Nilsson, C., Mostovenko, E., Lichti, C., Ruggles, K., Fenyö, D., Rosenbloom, K., Hancock, W., Paik, Y-K., Omenn, G., LaBaer, J., Kroes, R., Uhlén, M., Hober, S., Végvári, Á., Andrén, P., Sulman, E., Lang, F., Fuentes, M., Carlsohn, E., Emmett, M. & 4 othersMoskal, J., Berven, F., Fehniger, T. & György Marko-Varga, 2015, In : Journal of Proteome Research. 14, 2, p. 603-608

    Research output: Contribution to journalArticle

  30. 2014
  31. AFFIRM – a multiplexed immunoaffinity platform that combines recombinant antibody fragments and LC-SRM analysis

    Säll, A., Carlsson, F., Olsson, N., Christer Wingren, Mats Ohlin, Persson, H. & Waldemarson, S., 2014, In : Journal of Proteome Research. 13, 12, p. 5837-5847

    Research output: Contribution to journalArticle

  32. Analytical Validation Considerations of Multiplex Mass-Spectrometry-Based Proteomic Platforms for Measuring Protein Biomarkers

    Boja, E. S., Fehniger, T., Baker, M. S., György Marko-Varga & Rodriguez, H., 2014, In : Journal of Proteome Research. 13, 12, p. 5325-5332

    Research output: Contribution to journalDebate/Note/Editorial

  33. Assessment of Peptide Chemical Modifications on the Development of an Accurate and Precise Multiplex Selected Reaction Monitoring Assay for Apolipoprotein E Isoforms

    Martinez-Morillo, E., Nielsen, H., Batruch, I., Drabovich, A. P., Begcevic, I., Lopez, M. F., Lennart Minthon, Bu, G., Mattsson, N., Portelius, E., Oskar Hansson & Diamandis, E. P., 2014, In : Journal of Proteome Research. 13, 2, p. 1077-1087

    Research output: Contribution to journalArticle

  34. Biorepository Regulatory Frameworks: Building Parallel Resources That Both Promote Scientific Investigation and Protect Human Subjects

    György Marko-Varga, Baker, M. S., Boja, E. S., Rodriguez, H. & Fehniger, T., 2014, In : Journal of Proteome Research. 13, 12, p. 5319-5324

    Research output: Contribution to journalDebate/Note/Editorial

  35. Confirmation of Protein Biomarkers of Corticosteroids Treatment in Veal Calves Sampled under Field Conditions

    Stella, R., Arrigoni, G., Biancotto, G., Krogh, M., Vascellari, M., Lega, F., Pozza, G., Angeletti, R., Andrighetto, I. & Peter James, 2014, In : Journal of Proteome Research. 13, 4, p. 1794-1799

    Research output: Contribution to journalArticle

  36. Four Areas of Engagement Requiring Strengthening in Modern Proteomics Today.

    Fehniger, T., Boja, E. S., Rodriguez, H., Baker, M. S. & György Marko-Varga, 2014, In : Journal of Proteome Research. 13, 12, p. 5310-5318

    Research output: Contribution to journalDebate/Note/Editorial

  37. Genome-wide Proteomics, Chromosome-centric Human Proteome Project (C-HPP), Part II

    Paik, Y-K., Omenn, G. S., Thongboonkerd, V., György Marko-Varga & Hancock, W. S., 2014, In : Journal of Proteome Research. 13, 1, p. 1-4

    Research output: Contribution to journalDebate/Note/Editorial

  38. Integrated Chromosome 19 Transcriptomic and Proteomic Datasets Derived from Six Glioma-Derived Cancer Stem Cell Lines

    Lichti, C., Liu, H., Shavkunov, A. S., Mostovenko, E., Sulman, E. P., Ezhilarasan, R., Wang, Q., Kroes, R., Moskal, J. C., Fenyö, D., Oksuz, B. A., Conrad, C. A., Lang, F. F., Berven, F. S., Végvári, Á., Melinda Rezeli, György Marko-Varga, Hober, S. & Nilsson, C. L., 2014, In : Journal of Proteome Research. 13, 1, p. 191-199

    Research output: Contribution to journalArticle

  39. Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets

    Chawade, A., Alexandersson, E. & Fredrik Levander, 2014, In : Journal of Proteome Research. 13, 6, p. 3114-3120

    Research output: Contribution to journalArticle

  40. Quantitative Label-Free Phosphoproteomics of Six Different Life Stages of the Late Blight Pathogen Phytophthora infestans Reveals Abundant Phosphorylation of Members of the CRN Effector Family

    Resjo, S., Ali, A., Meijer, H. J. G., Seidl, M. F., Snel, B., Sandin, M., Fredrik Levander, Govers, F. & Andreasson, E., 2014, In : Journal of Proteome Research. 13, 4, p. 1848-1859

    Research output: Contribution to journalArticle

  41. 2013
  42. Quantitative proteomic analysis of microdissected breast cancer tissues: comparison of label-free and SILAC-based quantification with shotgun, directed, and targeted MS approaches

    Liu, N. Q., Dekker, L. J. M., Stingl, C., Güzel, C., Tommaso De Marchi, Martens, J. W. M., Foekens, J. A., Luider, T. M. & Umar, A., 2013 Oct 4, In : Journal of Proteome Research. 12, 10, p. 4627-41

    Research output: Contribution to journalArticle

  43. A modified database search strategy leads to improved identification of in vitro brominated peptides spiked into a complex proteomic sample

    Liu, H., Lichti, C. F., Mirfattah, B., Frahm, J. & Carol L Nilsson, 2013 Sep 6, In : Journal of Proteome Research. 12, 9, p. 4248-54 7 p.

    Research output: Contribution to journalArticle

  44. A First Step Toward Completion of a Genome-Wide Characterization of the Human Proteome.

    György Marko-Varga, Omenn, G. S., Paik, Y-K. & Hancock, W. S., 2013, In : Journal of Proteome Research. 12, 1, p. 1-5

    Research output: Contribution to journalArticle

  45. Blood Plasma Reference Material – A Global Resource for Proteomic Research

    Johan Malm, Danmyr, P., Nilsson, R., Roger Appelqvist, Végvári, Á. & György Marko-Varga, 2013, In : Journal of Proteome Research. 12, 7, p. 3087-3092

    Research output: Contribution to journalArticle

  46. Chromosome 19 Annotations with Disease Speciation - A First Report from the Global Research Consortium

    Nilsson, C. L., Berven, F., Selheim, F., Liu, H., Moskal, J. F., Kroes, R. A., Sulman, E. P., Conrad, C. A., Lang, F. F., Andrén, P. E., Nilsson, A., Carlsohn, E., Lilja, H., Malm, J., Fenyö, D., Subramaniyam, D., Wang, X., Gonzales-Gonzales, M., Dasilva, N., Diez, P. & 11 othersFuentes, M., Végvári, Á., Sjödin, K., Charlotte Welinder, Thomas Laurell, Fehniger, T., Henrik Lindberg, Melinda Rezeli, Edula, G., Hober, S. & György Marko-Varga, 2013, In : Journal of Proteome Research. 12, 1, p. 135-150

    Research output: Contribution to journalArticle

  47. Contribution of Antibody-based Protein Profiling to the Human Chromosome-centric Proteome Project (C-HPP)

    Fagerberg, L., Oksvold, P., Skogs, M., Algenas, C., Lundberg, E., Ponten, F., Sivertsson, A., Odeberg, J., Klevebring, D., Kampf, C., Asplund, A., Sjostedt, E., Szigyarto, C. A-K., Edqvist, P-H., Olsson, I., Rydberg, U., Hudson, P., Takanen, J. O., Berling, H., Bjorling, L. & 12 othersTegel, H., Rockberg, J., Nilsson, P., Navani, S., Karin Jirström, Mulder, J., Schwenk, J. M., Zwahlen, M., Hober, S., Forsberg, M., von Feilitzen, K. & Uhlen, M., 2013, In : Journal of Proteome Research. 12, 6, p. 2439-2448

    Research output: Contribution to journalArticle

  48. Determination of Phosphorylation Sites in the DivIVA Cytoskeletal Protein of Streptomyces coelicolor by Targeted LC-MS/MS

    Saalbach, G., Hempel, A. M., Vigouroux, M., Klas Flärdh, Buttner, M. J. & Naldrett, M. J., 2013, In : Journal of Proteome Research. 12, 9, p. 4187-4192

    Research output: Contribution to journalArticle

  49. Experimental Models to Study Drug Distributions in Tissue Using MALDI Mass Spectrometry

    Végvári, Á., Fehniger, T. E., Melinda Rezeli, Thomas Laurell, Döme, B., Jansson, B., Charlotte Welinder & György Marko-Varga, 2013, In : Journal of Proteome Research. 12, 12, p. 5626-5633

    Research output: Contribution to journalArticle

  50. Protein Expression Profiling of Formalin-Fixed Paraffin-Embedded Tissue Using Recombinant Antibody Microarrays

    Pauly, F., Dexlin Mellby, L., Sara Ek, Mats Ohlin, Olsson, N., Karin Jirström, Michael Dictor, Schoenmakers, S., Carl Borrebaeck & Christer Wingren, 2013, In : Journal of Proteome Research. 12, 12, p. 5943-5953

    Research output: Contribution to journalArticle

  51. Quantification of Human Kallikrein-2 in Clinical Samples by Selected Reaction Monitoring

    Végvári, Á., Sjödin, K., Melinda Rezeli & György Marko-Varga, 2013, In : Journal of Proteome Research. 12, 10, p. 4612-4616

    Research output: Contribution to journalArticle

  52. Quantitative Proteomics Profiling of Primary Lung Adenocarcinoma Tumors Reveals Functional Perturbations in Tumor Metabolism

    Pernemalm, M., De Petris, L., Branca, R. M., Forshed, J., Kanter, L., Soria, J-C., Girard, P., Validire, P., Pawitan, Y., van den Oord, J., Lazar, V., Sven Påhlman, Lewensohn, R. & Lehtio, J., 2013, In : Journal of Proteome Research. 12, 9, p. 3934-3943

    Research output: Contribution to journalArticle

  53. The Lecticans of Mammalian Brain Perineural Net Are O-Mannosylated

    Pacharra, S., Hanisch, F-G., Muehlenhoff, M., Faissner, A., Uwe Rauch & Breloy, I., 2013, In : Journal of Proteome Research. 12, 4, p. 1764-1771

    Research output: Contribution to journalArticle

  54. 2012
  55. Automated Selected Reaction Monitoring Software for Accurate Label-Free Protein Quantification.

    Teleman, J., Christofer Karlsson, Waldemarson, S., Hansson, K. M., Peter James, Johan Malmström & Fredrik Levander, 2012, In : Journal of Proteome Research. 11, 7, p. 3766-3773

    Research output: Contribution to journalArticle

  56. Automated Workflow for Large-Scale Selected Reaction Monitoring Experiments

    Malmstrom, L., Johan Malmström, Selevsek, N., Rosenberger, G. & Aebersold, R., 2012, In : Journal of Proteome Research. 11, 3, p. 1644-1653

    Research output: Contribution to journalArticle

  57. Characterization of the Lipid Droplet Proteome of a Clonal Insulin-producing β-Cell Line (INS-1 832/13).

    Sara Larsson, Resjö, S., Maria Gomez, James, P. & Cecilia Holm, 2012, In : Journal of Proteome Research. 11, 2, p. 1264-1273

    Research output: Contribution to journalArticle

  58. Critical Comparison of Multidimensional Separation Methods for Increasing Protein Expression Coverage

    Antberg, L., Cifani, P., Sandin, M., Fredrik Levander & Peter James, 2012, In : Journal of Proteome Research. 11, 5, p. 2644-2652

    Research output: Contribution to journalArticle

  59. Multimodel Pathway Enrichment Methods for Functional Evaluation of Expression Regulation.

    Kirik, U., Cifani, P., Albrekt, A-S., Malin Lindstedt, Anders Heyden & Fredrik Levander, 2012, In : Journal of Proteome Research. 11, 5, p. 2955-2967

    Research output: Contribution to journalArticle

  60. Protein Expression Changes in Ovarian Cancer during the Transition from Benign to Malignant.

    Waldemarson, S., Krogh, M., Alaiya, A., Kirik, U., Schedvins, K., Auer, G., Hansson, K. M., Ossola, R., Aebersold, R., Lee, H., Johan Malmström & Peter James, 2012, In : Journal of Proteome Research. 11, 5, p. 2876-2889

    Research output: Contribution to journalArticle

  61. Relative Quantification of Membrane Proteins in Wild-Type and Prion Protein (PrP)-Knockout Cerebellar Granule Neurons

    Stella, R., Cifani, P., Peggion, C., Hansson, K. M., Lazzari, C., Bendz, M., Fredrik Levander, Sorgato, M. C., Bertoli, A. & Peter James, 2012, In : Journal of Proteome Research. 11, 2, p. 523-536

    Research output: Contribution to journalArticle

  62. Standard Guidelines for the Chromosome-Centric Human Proteome Project

    Paik, Y-K., Omenn, G. S., Uhlen, M., Hanash, S., Marko-Varga, G., Aebersold, R., Bairoch, A., Yamamoto, T., Legrain, P., Lee, H-J., Na, K., Jeong, S-K., He, F., Binz, P-A., Nishimura, T., Keown, P., Baker, M. S., Yoo, J. S., Garin, J., Archakov, A. & 3 othersBergeron, J., Salekdeh, G. H. & Hancock, W. S., 2012, In : Journal of Proteome Research. 11, 4, p. 2005-2013

    Research output: Contribution to journalArticle

  63. 2011
  64. Discovery of a novel B-Raf fusion protein related to c-Met drug resistance

    Dillon, R., Carol L Nilsson, Shi, S. D-H., Lee, N. V., Krastins, B. & Greig, M. J., 2011 Nov 4, In : Journal of Proteome Research. 10, 11, p. 5084-94 11 p.

    Research output: Contribution to journalArticle

  65. Genomics, transcriptomics, and peptidomics of Daphnia pulex neuropeptides and protein hormones

    Dircksen, H., Neupert, S., Predel, R., Verleyen, P., Huybrechts, J., Strauss, J., Hauser, F., Stafflinger, E., Schneider, M., Pauwels, K., Schoofs, L. & Grimmelikhuijzen, C. J. P., 2011 Oct 7, In : Journal of Proteome Research. 10, 10, p. 4478-4504

    Research output: Contribution to journalArticle

  66. A Clinician View and Experience of Proteomic Studies in the Light of Lung Cancer in Japanese Healthcare

    Kato, H., Nishimura, T., Hirano, T., Nomura, M., Tojo, H., Fujii, K., Kawamura, T., Mikami, S., Kihara, M., Bando, Y., Tsuboi, M., Ikeda, N. & György Marko-Varga, 2011, In : Journal of Proteome Research. 10, 1, p. 51-57

    Research output: Contribution to journalDebate/Note/Editorial

  67. Coomassie Staining as Loading Control in Western Blot Analysis

    Charlotte Welinder & Lars Ekblad, 2011, In : Journal of Proteome Research. 10, 3, p. 1416-1419

    Research output: Contribution to journalArticle

  68. Hunting for Protein Markers of Hypoxia by Combining Plasma Membrane Enrichment with a New Approach to Membrane Protein Analysis

    Cifani, P., Bendz, M., Wårell, K., Hansson, K. M., Fredrik Levander, Sandin, M., Krogh, M., Ovenberger, M., Fredlund, E., Marica Vaapil, Alexander Pietras, Sven Påhlman & Peter James, 2011, In : Journal of Proteome Research. 10, 4, p. 1645-1656

    Research output: Contribution to journalArticle

  69. Protein Expression Changes in Skeletal Muscle in Response to Growth Promoter Abuse in Beef Cattle

    Stella, R., Biancotto, G., Krogh, M., Angeletti, R., Pozza, G., Sorgato, M. C., Peter James & Andrighetto, I., 2011, In : Journal of Proteome Research. 10, 6, p. 2744-2757

    Research output: Contribution to journalArticle

  70. 2010
  71. Glycomic and transcriptomic response of GSC11 glioblastoma stem cells to STAT3 phosphorylation inhibition and serum-induced differentiation

    He, H., Carol L Nilsson, Emmett, M. R., Marshall, A. G., Kroes, R. A., Moskal, J. R., Ji, Y., Colman, H., Priebe, W., Lang, F. & Conrad, C. A., 2010 May 7, In : Journal of Proteome Research. 9, 5, p. 2098-2108 11 p.

    Research output: Contribution to journalArticle

  72. Quantitative phosphoproteomic analysis of the STAT3/IL-6/HIF1alpha signaling network: an initial study in GSC11 glioblastoma stem cells

    Carol L Nilsson, Dillon, R., Devakumar, A., Shi, S. D-H., Greig, M. J., Rogers, J. C., Krastins, B., Rosenblatt, M., Kilmer, G., Major, M., Kaboord, B. J., Sarracino, D., Rezai, T., Prakash, A., Lopez, M., Ji, Y., Priebe, W., Lang, F., Colman, H. & Conrad, C. A., 2010 Jan, In : Journal of Proteome Research. 9, 1, p. 430-443 14 p.

    Research output: Contribution to journalArticle

  73. Aptamer microarray mediated capture and mass spectrometry identification of biomarker in serum samples.

    Ji-Young, A., Lee, S. W., Kang, H. S., Jo, M., Lee, D-K., Thomas Laurell & Kim, S., 2010, In : Journal of Proteome Research. 9, 11, p. 5568-5573

    Research output: Contribution to journalArticle

  74. Time-Dependent Proteomic iTRAQ Analysis of Nasal Lavage of Hairdressers Challenged by Persulfate.

    Monica Kåredal, Mörtstedt, H., Jeppsson, M., Diab, K., Jörn Nielsen, Jönsson, B. A. & Christian Lindh, 2010, In : Journal of Proteome Research. okt, p. 5620-5628

    Research output: Contribution to journalArticle

  75. 2009
  76. Expression of a Core 3 Disialyl-Le(x) Hexasaccharide in Human Colorectal Cancers: A Potential Marker of Malignant Transformation in Colon.

    Robbe-Masselot, C., Herrmann, A., Maes, E., Ingemar Carlstedt, Michalski, J-C. & Capon, C., 2009, In : Journal of Proteome Research.

    Research output: Contribution to journalArticle

  77. Omics Analyses Reveal a Potential Link between Hormone-Sensitive Lipase and Polyamine Metabolism.

    Fernandez, C., Krogh, M., Wårell, K., Alm, K., Stina Oredsson, Lo Persson, Peter James & Cecilia Holm, 2009, In : Journal of Proteome Research. 8, p. 5008-5019

    Research output: Contribution to journalArticle

  78. Quantification of Membrane Proteins Using Nonspecific Protease Digestions

    Bendz, M., Carlsson Möller, M., Arrigoni, G., Wåhlander, Å., Stella, R., Cappadona, S., Fredrik Levander, Lars Hederstedt & Peter James, 2009, In : Journal of Proteome Research. 8, 12, p. 5666-5673

    Research output: Contribution to journalArticle

  79. The Proteios Software Environment: an extensible multiuser platform for management and analysis of proteomics data

    Jari Häkkinen, Vincic, G., Månsson, O., Wårell, K. & Fredrik Levander, 2009, In : Journal of Proteome Research. 8, 6, p. 3037-3043

    Research output: Contribution to journalArticle

  80. 2008
  81. Design of recombinant antibody microarrays for cell surface membrane proteomics

    Dexlin Mellby, L., Ingvarsson, J., Frendeus, B., Carl Borrebaeck & Christer Wingren, 2008, In : Journal of Proteome Research. 7, 1, p. 319-327

    Research output: Contribution to journalArticle

  82. ENSAM: Europium Nanoparticles for Signal Enhancement of Antibody Microarrays on Nanoporous Silicon.

    Järås, K., Tajudin, A., Ressine, A., Soukka, T., György Marko-Varga, Anders Bjartell, Johan Malm, Thomas Laurell & Hans Lilja, 2008, In : Journal of Proteome Research. 7, p. 1308-1314

    Research output: Contribution to journalArticle

  83. Mass Spectrometry Analysis of a Protein Kinase CK2 beta Subunit Interactome Isolated from Mouse Brain by Affinity Chromatography.

    Arrigoni, G., Pagano, M., Sarno, S., Cesaro, L., Peter James & Pinna, L., 2008, In : Journal of Proteome Research. 7, 3, p. 990-1000

    Research output: Contribution to journalArticle

  84. Metabolomic and proteomic analysis of a clonal insulin-producing beta-cell line (INS-1 832/13).

    Celine Fernandez, Krus, U., Hallgard, E., Peter Spégel, Cecilia Holm, Krogh, M., Wårell, K., Peter James & Hindrik Mulder, 2008, In : Journal of Proteome Research. 7, 1, p. 400-411

    Research output: Contribution to journalArticle

  85. 2007
  86. 14-3-3 expression in denervated hippocampus after entorhinal cortex lesion assessed by culture-derived isotope tags in quantitative proteomics

    Sihlbom, C., Wilhelmsson, U., Li, L., Carol L Nilsson & Pekny, M., 2007 Sep, In : Journal of Proteome Research. 6, 9, p. 3491-3500 10 p.

    Research output: Contribution to journalArticle

  87. Proteomic investigation of glioblastoma cell lines treated with wild-type p53 and cytotoxic chemotherapy demonstrates an association between galectin-1 and p53 expression

    Puchades, M., Carol L Nilsson, Emmett, M. R., Aldape, K. D., Ji, Y., Lang, F., Liu, T-J. & Conrad, C. A., 2007 Feb, In : Journal of Proteome Research. 6, 2, p. 869-75 7 p.

    Research output: Contribution to journalArticle

  88. Altered chaperone and protein turnover regulators expression in cultured skin fibroblasts from type 1 diabetes mellitus with nephropathy

    Tessari, P., Puricelli, L., Iori, E., Arrigoni, G., Vedovato, M., Peter James, Coracina, C. & Millioni, R., 2007, In : Journal of Proteome Research. 6, 3, p. 976-986

    Research output: Contribution to journalArticle

  89. A probabilistic treatment of the missing spot problem in 2D gel electrophoresis experiments

    Krogh, M., Celine Fernandez, Teilum, M., Bengtsson, S. & Peter James, 2007, In : Journal of Proteome Research. 6, 8, p. 3335-3343

    Research output: Contribution to journalArticle

  90. Automating MALDI Sample Plate Loading

    Andersson, T., Johansson, M., Bolmsjö, G. & Peter James, 2007, In : Journal of Proteome Research. 6, 2, p. 894-896

    Research output: Contribution to journalArticle

  91. Comparative Time-Dependent Analysis of Potential Inflammation Biomarkers in Lymphoma-Bearing SJL Mice.

    Monica Kåredal, Bhat, V., Babu, I., Wishnok, J. & Tannenbaum, S., 2007, In : Journal of Proteome Research. 6, 5, p. 1735-1744

    Research output: Contribution to journalArticle

  92. Design of recombinant antibody microarrays for serum protein profiling: Targeting of complement proteins

    Ingvarsson, J., Larsson, A., Sjöholm, A., Lennart Truedsson, Bo Jansson, Carl Borrebaeck & Christer Wingren, 2007, In : Journal of Proteome Research. 6, 9, p. 3527-3536

    Research output: Contribution to journalArticle

  93. Development of reagents for differential protein quantitation by subtractive parent (precursor) ion scanning

    Wåhlander, Å., Arrigoni, G., Wårell, K., Fredrik Levander, Palmgren, R., Maloisel, J-L., Busson, P. & Peter James, 2007, In : Journal of Proteome Research. 6, 3, p. 1101-1113

    Research output: Contribution to journalArticle

  94. Hypothermia Affects Translocation of Numerous Cytoplasmic Proteins Following Global Cerebral Ischemia.

    Teilum, M., Krogh, M., Tadeusz Wieloch & Gustav Mattiasson, 2007, In : Journal of Proteome Research. 6, 7, p. 2822-2832

    Research output: Contribution to journalArticle

  95. Large-Scale Proteomics Analysis of Human Ovarian Cancer for Biomarkers

    Bengtsson, S., Krogh, M., Al-Khalili Szigyarto, C., Uhlen, M., Schedvins, K., Silfversward, C., Linder, S., Auer, G., Alaiya, A. & Peter James, 2007, In : Journal of Proteome Research. 6, 4, p. 1440-1450

    Research output: Contribution to journalArticle

  96. Proteomic profiling of plasma in Huntington's disease reveals neuroinflammatory activation and biomarker candidates

    Dalrymple, A., Wild, E. J., Joubert, R., Sathasivam, K., Bjorkqvist, M., Åsa Petersén, Jackson, G. S., Isaacs, J. D., Kristiansen, M., Bates, G. P., Leavitt, B. R., Keir, G., Ward, M. & Tabrizi, S. J., 2007, In : Journal of Proteome Research. 6, 7, p. 2833-2840

    Research output: Contribution to journalArticle

  97. Proteomic variation is as large within as between strawberry varieties

    Alm, R., Ekefjard, A., Krogh, M., Jari Häkkinen & Cecilia Emanuelsson, 2007, In : Journal of Proteome Research. 6, 8, p. 3011-3020

    Research output: Contribution to journalArticle

  98. 2006
  99. Characterization of the outer membrane protein profile from disease-related Helicobacter pylori isolates by subcellular fractionation and nano-LC FT-ICR MS analysis

    Carlsohn, E., Nyström, J., Karlsson, H., Svennerholm, A-M. & Carol L Nilsson, 2006 Nov, In : Journal of Proteome Research. 5, 11, p. 3197-204 8 p.

    Research output: Contribution to journalArticle

  100. Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis

    Johan Malmström, Lee, H., Nesvizhskii, A. I., Shteynberg, D., Mohanty, S., Brunner, E., Ye, M., Weber, G., Eckerskorn, C. & Aebersold, R., 2006 Sep, In : Journal of Proteome Research. 5, 9, p. 2241-9 9 p.

    Research output: Contribution to journalArticle

  101. Aqueous two-phase partitioning for proteomic monitoring of cell surface biomarkers in human peripheral blood mononuclear cells

    Everberg, H., Peterson Wulff, R., Rak, S., Folke Tjerneld & Cecilia Emanuelsson, 2006, In : Journal of Proteome Research. 5, 5, p. 1168-1175

    Research output: Contribution to journalArticle

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