Molecular and Cellular Proteomics, 1535-9484

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  1. 2018
  2. Comparative Secretome Analyses of Primary Murine White and Brown Adipocytes Reveal Novel Adipokines

    Ali Khan, A., Jenny Hansson, Weber, P., Foehr, S., Krijgsveld, J., Herzig, S. & Scheideler, M., 2018 Dec, In : Molecular and Cellular Proteomics. 17, 12, p. 2358-2370 13 p.

    Research output: Contribution to journalArticle

  3. Development of large-scale cross-linking mass spectrometry

    Barysz, H. M. & Johan Malmstroem, 2018, In : Molecular and Cellular Proteomics. 17, 6, p. 1055-1066

    Research output: Contribution to journalReview article

  4. 2017
  5. Proteomic analysis of phytophthora infestans reveals the importance of cell wall proteins in pathogenicity

    Resjö, S., Brus, M., Ashfaq Ali, Meijer, H. J. G., Sandin, M., Govers, F., Fredrik Levander, Grenville-Briggs, L. J. & Andreasson, E., 2017 Nov 1, In : Molecular and Cellular Proteomics. 16, 11, p. 1958-1971 14 p.

    Research output: Contribution to journalArticle

  6. 2015
  7. Quantitative proteomics reveals protein-protein interactions with fibroblast growth factor 12 as a component of the voltage-gated sodium channel 1.2 (nav1.2) macromolecular complex in Mammalian brain

    Wildburger, N. C., Ali, S. R., Hsu, W-C. J., Shavkunov, A. S., Nenov, M. N., Lichti, C. F., LeDuc, R. D., Mostovenko, E., Panova-Elektronova, N. I., Emmett, M. R., Carol L Nilsson & Laezza, F., 2015 May, In : Molecular and Cellular Proteomics. 14, 5, p. 1288-1300 13 p.

    Research output: Contribution to journalArticle

  8. 2014
  9. Ferritin heavy chain in triple negative breast cancer: a favorable prognostic marker that relates to a cluster of differentiation 8 positive (CD8+) effector T-cell response

    Liu, N. Q., Tommaso De Marchi, Timmermans, A. M., Beekhof, R., Trapman-Jansen, A. M. A. C., Foekens, R., Look, M. P., van Deurzen, C. H. M., Span, P. N., Sweep, F. C. G. J., Brask, J. B., Timmermans-Wielenga, V., Debets, R., Martens, J. W. M., Foekens, J. A. & Umar, A., 2014 Jul, In : Molecular and Cellular Proteomics. 13, 7, p. 1814-27 14 p.

    Research output: Contribution to journalArticle

  10. Inhibition of Circulating Dipeptidyl Peptidase 4 Activity in Patients with Metastatic Prostate Cancer

    Nazarian, A., Lawlor, K., Yi, S. S., Philip, J., Ghosh, M., Yaneva, M., Villanueva, J., Saghatelian, A., Assel, M., Vickers, A. J., Eastham, J. A., Scher, H. I., Carver, B. S., Hans Lilja & Tempst, P., 2014, In : Molecular & Cellular Proteomics. 13, 11, p. 3082-3096

    Research output: Contribution to journalArticle

  11. Numerical compression schemes for proteomics mass spectrometry data.

    Teleman, J., Dowsey, A. W., Gonzalez-Galarza, F. F., Perkins, S., Pratt, B., Rost, H., Malmstrom, L., Johan Malmström, Jones, A. R., Deutsch, E. W. & Levander, F., 2014, In : Molecular & Cellular Proteomics. 13, 6, p. 1537-1542

    Research output: Contribution to journalArticle

  12. Quantitative proteomic analysis reveals metabolic alterations, calcium dysregulation and increased expression of extracellular matrix proteins in laminin α2 chain-deficient muscle.

    Menezes de Oliveira, B., Matsumura, C., Fontes Oliveira, C., Kinga Gawlik, Acosta, H., Wernhoff, P. & Madeleine Durbeej-Hjalt, 2014, In : Molecular & Cellular Proteomics. 13, 11, p. 3001-3013

    Research output: Contribution to journalArticle

  13. 2013
  14. An adaptive alignment algorithm for quality-controlled label-free LC-MS.

    Sandin, M., Ali, A., Hansson, K., Månsson, O., Andreasson, E., Resjö, S. & Fredrik Levander, 2013, In : Molecular & Cellular Proteomics. 12, 5, p. 1407-1420

    Research output: Contribution to journalArticle

  15. Grading breast cancer tissues using molecular portraits.

    Olsson, N., Skoog, P., Peter James, Hansson, K. M., Waldemarson, S., Per Malmström, Mårten Fernö, Lisa Rydén, Christer Wingren & Carl Borrebaeck, 2013, In : Molecular & Cellular Proteomics. 12, 12, p. 3612-3623

    Research output: Contribution to journalArticle

  16. Network-based Analysis of Genome Wide Association Data Provides Novel Candidate Genes for Lipid and Lipoprotein Traits

    Sharma, A., Gulbahce, N., Pevzner, S. J., Menche, J., Ladenvall, C., Folkersen, L., Eriksson, P., Marju Orho-Melander & Barabasi, A-L., 2013, In : Molecular & Cellular Proteomics. 12, 11, p. 3398-3408

    Research output: Contribution to journalArticle

  17. 2012
  18. Proteomic cornerstones of hematopoietic stem cell differentiation: distinct signatures of multipotent progenitors and myeloid committed cells

    Klimmeck, D., Jenny Hansson, Raffel, S., Vakhrushev, S. Y., Trumpp, A. & Krijgsveld, J., 2012 Aug, In : Molecular & Cellular Proteomics. 11, 8, p. 286-302 17 p.

    Research output: Contribution to journalArticle

  19. TraML: a standard format for exchange of selected reaction monitoring transition lists

    Deutsch, E. W., Chambers, M., Neumann, S., Fredrik Levander, Binz, P-A., Shofstahl, J., Campbell, D. S., Mendoza, L., Ovelleiro, D., Helsens, K., Martens, L., Aebersold, R., Moritz, R. L. & Brusniak, M-Y., 2012, In : Molecular & Cellular Proteomics. 11, 4, p. R111.015040

    Research output: Contribution to journalArticle

  20. 2011
  21. A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas

    Farrah, T., Deutsch, E. W., Omenn, G. S., Campbell, D. S., Sun, Z., Bletz, J. A., Mallick, P., Katz, J. E., Johan Malmström, Ossola, R., Watts, J. D., Lin, B., Zhang, H., Moritz, R. L. & Aebersold, R., 2011 Sep, In : Molecular & Cellular Proteomics. 10, 9, p. M110.006353

    Research output: Contribution to journalArticle

  22. Time-resolved quantitative proteome analysis of in vivo intestinal development

    Jenny Hansson, Panchaud, A., Favre, L., Bosco, N., Mansourian, R., Benyacoub, J., Blum, S., Jensen, O. N. & Kussmann, M., 2011 Mar, In : Molecular & Cellular Proteomics. 10, 3, p. M110.005231

    Research output: Contribution to journalArticle

  23. Characterization of human myotubes from type 2 diabetic and non-diabetic subjects using complementary quantitative mass spectrometric methods.

    Thingholm, T., Bak, S., Beck-Nielsen, H., Jensen, O. N. & Gaster, M., 2011, In : Molecular & Cellular Proteomics. 10, 9

    Research output: Contribution to journalArticle

  24. Impact of temperature dependent sampling procedures in proteomics and peptidomics – A characterization of the liver and pancreas post mortem degradome

    Schultz, B., Sköld, K., Kultima, K., Celine Fernandez, Sofia Waldemarson, Savitski, M., Svensson, M., Borén, M., Stella, R., Andrén, P., Zubarev, R. & Peter James, 2011, In : Molecular & Cellular Proteomics. 10, 3

    Research output: Contribution to journalArticle

  25. mzML - a community standard for mass Spectrometry data

    Martens, L., Chambers, M., Sturm, M., Kessner, D., Fredrik Levander & Shofstahl, J., 2011, In : Molecular & Cellular Proteomics. 10, 1, p. R110.000133.1-R110.000133.2

    Research output: Contribution to journalArticle

  26. Proteomic analysis and discovery using affinity proteomics and mass spectrometry.

    Olsson, N., Christer Wingren, Mattsson, M., Peter James, O'Connell, D., Nilsson, F., Cahill, D. J. & Carl Borrebaeck, 2011, In : Molecular & Cellular Proteomics. 10

    Research output: Contribution to journalArticle

  27. Serum protein profiling of systemic lupus erythematosus and systemic sclerosis using recombinant antibody microarrays.

    Carlsson, A., Dirk Wuttge, Ingvarsson, J., Anders Bengtsson, Sturfelt, G., Borrebaeck, C. & Wingren, C., 2011, In : Molecular & Cellular Proteomics. 10

    Research output: Contribution to journalArticle

  28. The Human Proteome Project: Current State and Future Direction

    Legrain, P., Aebersold, R., Archakov, A., Bairoch, A., Bala, K., Beretta, L., Bergeron, J., Borchers, C. H., Corthals, G. L., Costello, C. E., Deutsch, E. W., Domon, B., Hancock, W., He, F., Hochstrasser, D., Marko-Varga, G., Salekdeh, G. H., Sechi, S., Snyder, M., Srivastava, S. & 5 othersUhlen, M., Wu, C. H., Yamamoto, T., Paik, Y-K. & Omenn, G. S., 2011, In : Molecular & Cellular Proteomics. 10, 7

    Research output: Contribution to journalArticle

  29. 2010
  30. A community standard format for the representation of protein affinity reagents

    Gloriam, D. E., Orchard, S., Bertinetti, D., Bjorling, E., Bongcam-Rudloff, E., Borrebaeck, C., Bourbeillon, J., Bradbury, A. R. M., de Daruvar, A., Duebel, S., Frank, R., Gibson, T. J., Gold, L., Haslam, N., Herberg, F. W., Hiltke, T., Hoheisel, J. D., Kerrien, S., Koegl, M., Konthur, Z. & 16 othersKorn, B., Landegren, U., Montecchi-Palazzi, L., Palcy, S., Rodriguez, H., Schweinsberg, S., Sievert, V., Stoevesandt, O., Taussig, M. J., Ueffing, M., Uhlen, M., van der Maarel, S., Christer Wingren, Woollard, P., Sherman, D. J. & Hermjakob, H., 2010, In : Molecular & Cellular Proteomics. 9, 1, p. 1-10

    Research output: Contribution to journalArticle

  31. Integrated protein array screening and high throughput validation of 70 novel neural calmodulin binding proteins

    O'Connell, D., Bauer, M., O'Brien, J., Johnson, W. M., Divizio, C. A., O'Kane, S. L., Berggård, T., Merino, A., Akerfeldt, K., Sara Linse & Cahill, D. J., 2010, In : Molecular & Cellular Proteomics. 9, 6, p. 1118-1132

    Research output: Contribution to journalArticle

  32. Proteomics of Plasma Membranes from Poplar Trees Reveals Tissue Distribution of Transporters, Receptors, and Proteins in Cell Wall Formation

    Nilsson, R., Katja Bernfur, Gustavsson, N., Bygdell, J., Wingsle, G. & Christer Larsson, 2010, In : Molecular & Cellular Proteomics. 9, 2, p. 368-387

    Research output: Contribution to journalArticle

  33. Toward Next Generation Plasma Profiling via Heat-induced Epitope Retrieval and Array-based Assays

    Schwenk, J. M., Igel, U., Neiman, M., Langen, H., Charlotte Becker, Anders Bjartell, Ponten, F., Wiklund, F., Gronberg, H., Nilsson, P. & Uhlen, M., 2010, In : Molecular & Cellular Proteomics. 9, 11, p. 2497-2507

    Research output: Contribution to journalArticle

  34. 2009
  35. Proteome Survey Using Affinity Proteomics and Mass Spectrometry

    Olsson, N., Christer Wingren, Mattsson, M., Peter James, Nilsson, F. & Carl Borrebaeck, 2009, In : Molecular & Cellular Proteomics. 8, 8 Suppl. 1, p. S21-S21

    Research output: Contribution to journalPublished meeting abstract

  36. 2008
  37. ANIBAL, stable isotope-based quantitative proteomics by aniline and benzoic acid labeling of amino and carboxylic groups

    Panchaud, A., Jenny Hansson, Affolter, M., Bel Rhlid, R., Piu, S., Moreillon, P. & Kussmann, M., 2008 Apr, In : Molecular & Cellular Proteomics. 7, 4, p. 800-12 13 p.

    Research output: Contribution to journalArticle

  38. 15-Prostaglandin Dehydrogenase Expression Alone or in Combination with ACSM1 Defines a Subgroup of the Apocrine Molecular Subtype of Breast Carcinoma

    Celis, J. E., Gromov, P., Cabezon, T., Moreira, J. M. A., Friis, E., Karin Jirström, Llombart-Bosch, A., Timmermans-Wielenga, V., Rank, F. & Gromova, I., 2008, In : Molecular & Cellular Proteomics. 7, 10, p. 1795-1809

    Research output: Contribution to journalArticle

  39. Identification of paracrine neuroprotective candidate proteins by a functional assay-driven proteomics approach

    Hauck, S. M., Gloeckner, C. J., Harley, M. E., Schoeffmann, S., Boldt, K., Per Ekström & Ueffing, M., 2008, In : Molecular & Cellular Proteomics. 7, 7, p. 1349-1361

    Research output: Contribution to journalArticle

  40. Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring

    Lange, V., Johan A. Malmstroem, Didion, J., King, N. L., Johansson, B., Schaefer, J., Rameseder, J., Wong, C-H., Deutsch, E. W., Brusniak, M-Y., Buehlmann, P., Lars Björck, Domon, B. & Aebersold, R., 2008, In : Molecular & Cellular Proteomics. 7, 8, p. 1489-1500

    Research output: Contribution to journalArticle

  41. 2007
  42. Antibody microarray-based serum protein profiling of systemic lupus erythematosus and systemic sclerosis

    Carlsson, A., Dirk Wuttge, Ingvarsson, J., Sturfelt, G., Carl Borrebaeck & Christer Wingren, 2007, In : Molecular & Cellular Proteomics. October, p. S310

    Research output: Contribution to journalPublished meeting abstract

  43. Design of self-addressabl antibody microarrays based on recombinant scFv antibodies microarray adapted by molecular design

    Christer Wingren, Vallkil, J., Larsson, C., Nordström, M., Lööf, K., Höök, F. & Carl Borrebaeck, 2007, In : Molecular & Cellular Proteomics. October, p. S311

    Research output: Contribution to journalPublished meeting abstract

  44. Recombinant antibdy microarray based oncoproteomics detects cancer and defines a predictor of survival for pancreatic carcinoma

    Ingvarsson, J., Christer Wingren, Carlsson, A., Ellmark, P., Wahren, B., Engström, G., Harmenberg, U., Krogh, M., Peterson, C. & Carl Borrebaeck, 2007, In : Molecular & Cellular Proteomics. p. S311

    Research output: Contribution to journalPublished meeting abstract

  45. Serum protein profiling of metastatic breast cancer

    Carlsson, A., Christer Wingren, Ingvarsson, J., Ellmark, P., Bo Baldetorp, Mårten Fernö, Håkan Olsson & Carl Borrebaeck, 2007, In : Molecular & Cellular Proteomics. October, p. S311

    Research output: Contribution to journalPublished meeting abstract

  46. 2006
  47. Design of recombinant antibodies for high-throughput proteomics

    Christer Wingren, Ingvarsson, J., Dexlin Mellby, L., Carlsson, A., Vallkil, J. & Carl Borrebaeck, 2006, In : Molecular & Cellular Proteomics. 5, p. S73

    Research output: Contribution to journalPublished meeting abstract

  48. Differential modification of phosducin protein in degenerating rd1 ret is associated with constitutively active CaMKII in rod outer segments.

    Hauck, S. M., Per Ekström, Ahuja Jensen, P., Suppman, S., Paquet-Durand, F., van Veen, T. & Ueffing, M., 2006, In : Molecular & Cellular Proteomics. 5, 2, p. 324-336

    Research output: Contribution to journalArticle

  49. From gene expression analysis to tissue microarrays - A rational approach to identify therapeutic and diagnostic targets in lymphoid malignancies

    Sara Ek, Andreasson, U., Hober, S., Kampf, C., Ponten, F., Uhlen, M., Merz, H. & Carl Borrebaeck, 2006, In : Molecular & Cellular Proteomics. 5, 6, p. 1072-1081

    Research output: Contribution to journalArticle

  50. High-throughput membrane proteomics using recombinant antibody microarrays

    Dexlin Mellby, L., Ingvarsson, J., Karlsson, J., Ellmark, P., Frendeus, B., Carl Borrebaeck & Christer Wingren, 2006, In : Molecular & Cellular Proteomics. 5, 10, p. S70

    Research output: Contribution to journalPublished meeting abstract

  51. 2005
  52. A dataset of human cornea proteins identified by Peptide mass fingerprinting and tandem mass spectrometry

    Karring, H., Thogersen, I. B., Klintworth, G. K., Moller-Pedersen, T. & Enghild, J. J., 2005, In : Molecular & Cellular Proteomics. 4, 9, p. 1406-1408

    Research output: Contribution to journalArticle

  53. Antibody microarrays: Technology and analysis of serum proteomes from cancer patients

    Christer Wingren, Ingvarsson, J., Carlsson, A. & Carl Borrebaeck, 2005, In : Molecular & Cellular Proteomics. 4, Supplement 1, p. S338

    Research output: Contribution to journalPublished meeting abstract

  54. 2004
  55. Transforming growth factor-beta 1 specifically induce proteins involved in the myofibroblast contractile apparatus

    Johan Malmström, Henrik Lindberg, Lindberg, C., Charlotte Bratt, Elisabet Wieslander, Delander, E-L., Särnstrand, B., Burns, J. S., Mose-Larsen, P., Fey, S. & György Marko-Varga, 2004 May, In : Molecular & Cellular Proteomics. 3, 5, p. 466-477 12 p.

    Research output: Contribution to journalArticle

  56. Proteomic analysis of the soluble fraction from human corneal fibroblasts with reference to ocular transparency

    Karring, H., Thogersen, I. B., Klintworth, G. K., Enghild, J. J. & Moller-Pedersen, T., 2004, In : Molecular & Cellular Proteomics. 3, 7, p. 660-674

    Research output: Contribution to journalArticle