Nucleic Acids Research, 1362-4962

Journal

More filtering options
  1. 2019
  2. Enzyme-free optical DNA mapping of the human genome using competitive binding

    Müller, V., Albertas Dvirnas, Andersson, J., Singh, V., Kk, S., Johansson, P., Ebenstein, Y., Tobias Ambjörnsson & Westerlund, F., 2019 Sep 5, In : Nucleic Acids Research. 47, 15, e89.

    Research output: Contribution to journalArticle

  3. 2018
  4. MutT homologue 1 (MTH1) catalyzes the hydrolysis of mutagenic O6-methyl-dGTP

    Jemth, A-S., Gustafsson, R., Bräutigam, L., Henriksson, L., Vallin, K. S. A., Sarno, A., Almlöf, I., Homan, E., Rasti, A., Warpman Berglund, U., Pål Stenmark & Helleday, T., 2018 Nov 16, In : Nucleic Acids Research. 46, 20, p. 10888-10904

    Research output: Contribution to journalArticle

  5. Mu transpososome activity-profiling yields hyperactive MuA variants for highly efficient genetic and genome engineering

    Rasila, T. S., Pulkkinen, E., Kiljunen, S., Haapa-Paananen, S., Pajunen, M. I., Salminen, A., Paulin, L., Mauno Vihinen, Rice, P. A. & Savilahti, H., 2018 May 18, In : Nucleic Acids Research. 46, 9, p. 4649-4661 13 p.

    Research output: Contribution to journalArticle

  6. 2017
  7. hnRNP L controls HPV16 RNA polyadenylation and splicing in an Akt kinase-dependent manner

    Naoko Kajitani, Glahder, J., Wu, C., Haoran Yu, Kersti Nilsson & Stefan Schwartz, 2017 Sep 19, In : Nucleic Acids Research. 45, 16, p. 9654-9678 25 p.

    Research output: Contribution to journalArticle

  8. Expanded national database collection and data coverage in the FINDbase worldwide database for clinically relevant genomic variation allele frequencies

    Viennas, E., Komianou, A., Mizzi, C., Stojiljkovic, M., Mitropoulou, C., Muilu, J., Mauno Vihinen, Grypioti, P., Papadaki, S., Pavlidis, C., Zukic, B., Katsila, T., Van Der Spek, P. J., Pavlovic, S., Tzimas, G. & Patrinos, G. P., 2017 Jan 1, In : Nucleic Acids Research. 45, D1, p. D846-D853

    Research output: Contribution to journalArticle

  9. 2016
  10. 2015
  11. Bacteriophage strain typing by rapid single molecule analysis.

    Grunwald, A., Dahan, M., Giesbertz, A., Adam Nilsson, Nyberg, L. K., Weinhold, E., Tobias Ambjörnsson, Westerlund, F. & Ebenstein, Y., 2015, In : Nucleic Acids Research. 43, 18, p. e117

    Research output: Contribution to journalArticle

  12. Ionic switch controls the DNA state in phage λ.

    Li, D., Liu, T., Zuo, X., Li, T., Qiu, X. & Alex Evilevitch, 2015, In : Nucleic Acids Research. 43, 13, p. 6348-6358

    Research output: Contribution to journalArticle

  13. The Biobanking Analysis Resource Catalogue (BARCdb): a new research tool for the analysis of biobank samples.

    Galli, J., Oelrich, J., Taussig, M. J., Andreasson, U., Eva Ortega-Paino & Landegren, U., 2015, In : Nucleic Acids Research. 43, D1, p. D1158-D1162

    Research output: Contribution to journalArticle

  14. 2014
  15. Quantification of DNA-associated proteins inside eukaryotic cells using single-molecule localization microscopy

    Etheridge, T. J., Boulineau, R. L., Herbert, A., Watson, A. T., Daigaku, Y., Tucker, J., George, S., Peter Jönsson, Palayret, M., Lando, D., Laue, E., Osborne, M. A., Klenerman, D., Lee, S. F. & Carr, A. M., 2014 Oct 29, In : Nucleic Acids Research. 42, 19, p. e146

    Research output: Contribution to journalArticle

  16. Competitive binding-based optical DNA mapping for fast identification of bacteria - multi-ligand transfer matrix theory and experimental applications on Escherichia coli.

    Adam Nilsson, Emilsson, G., Nyberg, L. K., Noble, C., Svensson Stadler, L., Fritzsche, J., Moore, E. R. B., Jonas Tegenfeldt, Tobias Ambjörnsson & Westerlund, F., 2014, In : Nucleic Acids Research. 42, 15, p. e118

    Research output: Contribution to journalArticle

  17. Major capsid reinforcement by a minor protein in herpesviruses and phage.

    Sae-Ueng, U., Liu, T., Catalano, C. E., Huffman, J. B., Homa, F. L. & Alex Evilevitch, 2014, In : Nucleic Acids Research. 42, 14, p. 9096-9107

    Research output: Contribution to journalArticle

  18. Nova1 is a master regulator of alternative splicing in pancreatic beta cells.

    Villate, O., Turatsinze, J-V., Mascali, L. G., Grieco, F. A., Nogueira, T. C., Cunha, D. A., Nardelli, T. R., Sammeth, M., Salunkhe, V. A., Jonathan Esguerra, Lena Eliasson, Marselli, L., Marchetti, P. & Eizirik, D. L., 2014, In : Nucleic Acids Research. 42, 18, p. 11818-11830

    Research output: Contribution to journalArticle

  19. REST mediates androgen receptor actions on gene repression and predicts early recurrence of prostate cancer.

    Svensson, C., Jens Ceder, Iglesias-Gato, D., Chuan, Y-C., Pang, S. T., Anders Bjartell, Martinez, R. M., Bott, L., Helczynski, L., David Ulmert, Wang, Y., Niu, Y., Collins, C. & Flores-Morales, A., 2014, In : Nucleic Acids Research. 42, 2, p. 999-1015

    Research output: Contribution to journalArticle

  20. 2013
  21. miR-23b regulates cytoskeletal remodeling, motility and metastasis by directly targeting multiple transcripts

    Pellegrino, L., Stebbing, J., Braga, V. M., Frampton, A. E., Jacob, J., Buluwela, L., Jiao, L. R., Periyasamy, M., Chris D Madsen, Caley, M. P., Ottaviani, S., Roca-Alonso, L., El-Bahrawy, M., Coombes, R. C., Krell, J. & Castellano, L., 2013 May 1, In : Nucleic Acids Research. 41, 10, p. 5400-12 13 p.

    Research output: Contribution to journalArticle

  22. DNA bending-induced phase transition of encapsidated genome in phage λ

    Lander, G. C., Johnson, J. E., Rau, D. C., Potter, C. S., Carragher, B. & Alex Evilevitch, 2013, In : Nucleic Acids Research. 41, 8, p. 4518

    Research output: Contribution to journalArticle

  23. HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis.

    Bagger, F. O., Rapin, N., Theilgaard-Moench, K., Kaczkowski, B., Thorén, L., Jendholm, J., Winther, O. & Porse, B. T., 2013, In : Nucleic Acids Research. 41, D1, p. D1034-D1039

    Research output: Contribution to journalArticle

  24. PlantLoc: an accurate web server for predicting plant protein subcellular localization by substantiality motif.

    Tang, S., Li, T., Cong, P., Xiong, W., Wang, Z. & Jiangming Sun, 2013, In : Nucleic Acids Research. 41, W1, p. W441-W447

    Research output: Contribution to journalArticle

  25. Suppression of HPV-16 late L1 5'-splice site SD3632 by binding of hnRNP D proteins and hnRNP A2/B1 to upstream AUAGUA RNA motifs.

    Li, X., Johansson, C., Glahder, J., Mossberg, A. & Stefan Schwartz, 2013, In : Nucleic Acids Research. 41, 22, p. 10488-10508

    Research output: Contribution to journalArticle

  26. 2012
  27. Structure of the bifunctional methyltransferase YcbY (RlmKL) that adds the m7G2069 and m2G2445 modifications in Escherichia coli 23S rRNA

    Wang, K-T., Desmolaize, B., Jie Nan, Zhang, X-W., Li, L-F., Douthwaite, S. & Su, X-D., 2012 Jun, In : Nucleic Acids Research. 40, 11, p. 5138-48 11 p.

    Research output: Contribution to journalArticle

  28. Telomerase-dependent generation of 70-nt-long telomeric single-stranded 3' overhangs in yeast

    Fridholm, H., Astromskas, E. & Marita Cohn, 2012, In : Nucleic Acids Research.

    Research output: Contribution to journalArticle

  29. 2009
  30. Kinetic and thermodynamic characterization of single-mismatch discrimination using single-molecule imaging

    Gunnarsson, A., Peter Jönsson, Zhdanov, V. P. & Höök, F., 2009 Aug, In : Nucleic Acids Research. 37, 14, p. e99

    Research output: Contribution to journalArticle

  31. SuperScent--a database of flavors and scents

    Dunkel, M., Schmidt, U., Struck, S., Berger, L., Gruening, B., Hossbach, J., Jaeger, I. S., Effmert, U., Piechulla, B., Eriksson, R., Knudsen, J. & Preissner, R., 2009, In : Nucleic Acids Research. 37, p. D291-D294

    Research output: Contribution to journalArticle

  32. Tissue-specific regulatory network extractor (TS-REX): a database and software resource for the tissue and cell type-specific investigation of transcription factor-gene networks.

    Colecchia, F., Kottwitz, D., Wagner, M., Pfenninger, C., Thiel, G., Tamm, I., Peterson, C. & Nuber, U., 2009, In : Nucleic Acids Research. 37, 11, p. e82

    Research output: Contribution to journalArticle

  33. 2007
  34. Conserved nucleotides in an RNA essential for hepatitis B virus replication show distinct mobility patterns.

    Petzold, K., Duchardt, E., Flodell, S., Larsson, G., Kidd-Ljunggren, K., Wijmenga, S. & Schleucher, J., 2007, In : Nucleic Acids Research. 35, 20, p. 6854-6861

    Research output: Contribution to journalArticle

  35. DNA binding mechanism revealed by high resolution crystal structure of Arabidopsis thaliana WRKY1 protein

    Duan, M-R., Jie Nan, Liang, Y-H., Mao, P., Lu, L., Li, L., Wei, C., Lai, L., Li, Y. & Su, X-D., 2007, In : Nucleic Acids Research. 35, 4, p. 1145-54 10 p.

    Research output: Contribution to journalArticle

  36. High-precision mapping of protein protein interfaces: an integrated genetic strategy combining en masse mutagenesis and DNA-level parallel analysis on a yeast two-hybrid platform.

    Pajunen, M., Turakainen, H., Poussu, E., Peränen, J., Mauno Vihinen & Savilahti, H., 2007, In : Nucleic Acids Research. 35, 16, p. e103

    Research output: Contribution to journalArticle

  37. 2006
  38. Solution structure of the apical stem-loop of the human hepatitis B virus encapsidation signal

    Flodell, S., Petersen, M., Girard, F., Zdunek, J., Kidd-Ljunggren, K., Schleucher, J. & Wijmenga, S., 2006, In : Nucleic Acids Research. 34, 16, p. 4449-4457

    Research output: Contribution to journalArticle

  39. 2005
  40. Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

    Karp, P., Ouzounis, C., Moore-Kochlacs, C., Goldovsky, L., Kaipa, P., Dag Ahrén, Tsoka, S., Darzentas, N., Kunin, V. & López-Bigas, N., 2005, In : Nucleic Acids Research. 33, 19, p. 6083-6089

    Research output: Contribution to journalArticle

  41. Genome-wide selection of unique and valid oligonucleotides.

    Hyyrö, H., Juhola, M. & Mauno Vihinen, 2005, In : Nucleic Acids Research. 33, 13, p. e115

    Research output: Contribution to journalArticle

  42. Measuring genome conservation across taxa: divided strains and united kingdoms

    Kunin, V., Dag Ahrén, Goldovsky, L., Janssen, P. & Ouzounis, C. A., 2005, In : Nucleic Acids Research. 33, 2, p. 616-621

    Research output: Contribution to journalArticle

  43. 2004
  44. Human protein reference database as a discovery resource for proteomics

    Peri, S., Navarro, J. D., Kristiansen, T. Z., Amanchy, R., Surendranath, V., Muthusamy, B., Gandhi, T. K. B., Chandrika, K. N., Deshpande, N., Suresh, S., Rashmi, B. P., Shanker, K., Padma, N., Niranjan, V., Harsha, H. C., Talreja, N., Vrushabendra, B. M., Ramya, M. A., Yatish, A. J., Joy, M. & 13 othersShivashankar, H. N., Kavitha, M. P., Menezes, M., Choudhury, D. R., Ghosh, N., Saravana, R., Chandran, S., Mohan, S. S., Jonnalagadda, C. K., Prasad, C. K., Kumar-Sinha, C., Deshpande, K. S. & Pandey, A., 2004 Jan 1, In : Nucleic Acids Research. 32, Database issue, p. D497-501

    Research output: Contribution to journalArticle

  45. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences

    Laslett, D. & Björn Canbäck, 2004, In : Nucleic Acids Research. 32, 1, p. 11-16

    Research output: Contribution to journalArticle

  46. Two-dimensional conformation-dependent electrophoresis (2D-CDE) to separate DNA fragments containing unmatched bulge from complex DNA samples

    Gunnarsson, G. H., Thormar, H. G., Gudmundsson, B., Åkesson, L. & Jonsson, J. J., 2004, In : Nucleic Acids Research. 32, 2, p. 23

    Research output: Contribution to journalArticle

  47. 2002
  48. 23S rRNA assisted folding of cytoplasmic malate dehydrogenase is distinctly different from its self-folding

    Sanyal, S., Pal, S., Chaudhuri, S. & DasGupta, C., 2002, In : Nucleic Acids Research. 30, 11, p. 2390-2397

    Research output: Contribution to journalArticle

  49. IDR: the ImmunoDeficiency Resource.

    Väliaho, J., Pusa, M., Ylinen, T. & Mauno Vihinen, 2002, In : Nucleic Acids Research. 30, 1, p. 232-234

    Research output: Contribution to journalArticle

  50. The apical stem-loop of the hepatitis B virus encapsidation signal folds into a stable tri-loop with two underlying pyrimidine bulges

    Flodell, S., Schleucher, J., Cromsigt, J., Ippel, H., Kidd-Ljunggren, K. & Wijmenga, S., 2002, In : Nucleic Acids Research. 30, 21, p. 4803-4811

    Research output: Contribution to journalArticle

  51. 2001
  52. Detection of mitochondrial single nucleotide polymorphisms using a primer elongation reaction on oligonucleotide microarrays

    Erdogan, F., Kirchner, R., Mann, W., Ropers, H-H. & Nuber, U., 2001, In : Nucleic Acids Research. 29, 7, p. 36

    Research output: Contribution to journalArticle

  53. 2000
  54. KinMutBase, a database of human disease-causing protein kinase mutations

    Stenberg, KAE., Riikonen, PT. & Mauno Vihinen, 2000, In : Nucleic Acids Research. 28, 1, p. 369-371

    Research output: Contribution to journalArticle

  55. Saccharomyces cerevisiae RAP1 bind to telomeric sequences with spatial flexibility

    Marita Cohn & Wahlin, J., 2000, In : Nucleic Acids Research. 28, 12, p. 2292-2301

    Research output: Contribution to journalArticle

  56. 1999
  57. KinMutBase, a database of human disease-causing protein kinase mutations

    Stenberg, KAE., Riikonen, PT. & Mauno Vihinen, 1999, In : Nucleic Acids Research. 27, 1, p. 362-364

    Research output: Contribution to journalArticle

  58. 1998
  59. BTKbase, mutation database for X-linked agammaglobulinemia (XLA)

    Mauno Vihinen, Brandau, O., Branden, LJ., Kwan, SP., Lappalainen, I., Lester, T., Noordzij, JG., Ochs, HD., Ollila, J., Pienaar, SM., Riikonen, P., Saha, BK. & Smith, CIE., 1998, In : Nucleic Acids Research. 26, 1, p. 242-247

    Research output: Contribution to journalArticle

  60. 1997
  61. BTKbase, mutation database for X-linked agammaglobulinemia (XLA)

    Mauno Vihinen, Belohradsky, BH., Haire, RN., HolinskiFeder, E., Kwan, SP., Lappalainen, I., Lehvaslaiho, H., Lester, T., Meindl, A., Ochs, HD., Ollila, J., Vorechovsky, I., Weiss, M. & Smith, CIE., 1997, In : Nucleic Acids Research. 25, 1, p. 166-171

    Research output: Contribution to journalArticle

  62. 1996
  63. BTKbase, mutation database for X-linked agammaglobulinemia (XLA)

    Mauno Vihinen, Iwata, T., Kinnon, C., Kwan, SP., Ochs, HD., Vorechovsky, I. & Smith, CIE., 1996, In : Nucleic Acids Research. 24, 1, p. 160-165

    Research output: Contribution to journalArticle

  64. 1995
  65. A new mutation in 16S rRNA of Escherichia coli conferring spectinomycin resistance

    U Johanson & Hughes, D., 1995 Feb 11, In : Nucleic Acids Research. 23, 3, p. 464-6 3 p.

    Research output: Contribution to journalArticle

  66. 1993
  67. Drosophila ribosomal protein S19 cDNA sequence

    Stefan Baumgartner, Martin, D. & Chiquet-ehrismann, R., 1993 Aug 11, In : Nucleic Acids Research. 21, 16, p. 3897 1 p.

    Research output: Contribution to journalArticle

  68. 1991
  69. An EcoRI polymorphism at the insulin receptor locus on a fragment comprising exons 4 to 8

    Åman, P., Pejovic, T. & Thoas Fioretos, 1991, In : Nucleic Acids Research. 19, 19, p. 5452-5452

    Research output: Contribution to journalArticle

Previous 1 2 Next