Infection Medicine Proteomics

Organisational unit: Research group

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  1. 2020
  2. A Global Screen for Assembly State Changes of the Mitotic Proteome by SEC-SWATH-MS

    Moritz Heusel, Frank, M., Köhler, M., Amon, S., Frommelt, F., Rosenberger, G., Bludau, I., Aulakh, S., Linder, M. I., Liu, Y., Collins, B. C., Gstaiger, M., Kutay, U. & Aebersold, R., 2020, In : Cell systems. 10, 2, p. 133-155.e6

    Research output: Contribution to journalArticle

  3. 2019
  4. Interaction with the host: the role of fibronectin and extracellular matrix proteins in the adhesion of Gram-negative bacteria

    Vaca, D. J., Thibau, A., Schütz, M., Kraiczy, P., Lotta Happonen, Johan Malmström & Kempf, V. A. J., 2019 Nov 29, In : Medical microbiology and immunology.

    Research output: Contribution to journalReview article

  5. A quantitative Streptococcus pyogenes-human protein-protein interaction map reveals localization of opsonizing antibodies

    Lotta Happonen, Hauri, S., Svensson Birkedal, G., Christofer Karlsson, Therese de Neergaard, Khakzad, H., Pontus Nordenfelt, Wikström, M., Wisniewska, M., Lars Björck, Lars Malmström & Johan Malmström, 2019 Jun 21, In : Nature Communications. 10, 1, p. 2727

    Research output: Contribution to journalArticle

  6. Computational health engineering applied to model infectious diseases and antimicrobial resistance spread

    Gestal, M. C., Dedloff, M. R. & Torres-Sangiao, E., 2019 Jun, In : Applied Sciences (Switzerland). 9, 12, 2486.

    Research output: Contribution to journalReview article

  7. Greedy de novo motif discovery to construct motif repositories for bacterial proteomes

    Khakzad, H., Johan Malmström & Lars Malmström, 2019 Apr 18, In : BMC Bioinformatics. 20, Suppl 4, 141.

    Research output: Contribution to journalArticle

  8. Rapid determination of quaternary protein structures in complex biological samples

    Hauri, S., Khakzad, H., Lotta Happonen, Teleman, J., Johan Malmström & Lars Malmström, 2019 Jan 14, In : Nature Communications. 10, 192.

    Research output: Contribution to journalArticle

  9. Applications of nanodiamonds in the detection and therapy of infectious diseases

    Sangiao, E. T., Holban, A. M. & Gestal, M. C., 2019, In : Materials. 12, 10, 1639.

    Research output: Contribution to journalReview article

  10. The Human Salivary Antimicrobial Peptide Profile according to the Oral Microbiota in Health, Periodontitis and Smoking

    Grant, M., Kilsgård, O., Åkerman, S., Klinge, B., Demmer, R. T., Johan Malmström & Jönsson, D., 2019, In : Journal of Innate Immunity. 11, 5, p. 432-444

    Research output: Contribution to journalArticle

  11. 2018
  12. Platelet activation and aggregation by the opportunistic pathogen Cutibacterium (Propionibacterium) acnes

    Frida Petersson, Kilsgård, O., Oonagh Shannon & Rolf Lood, 2018 Jan 1, In : PLoS ONE. 13, 1, e0192051.

    Research output: Contribution to journalArticle

  13. Development of large-scale cross-linking mass spectrometry

    Barysz, H. M. & Johan Malmstroem, 2018, In : Molecular and Cellular Proteomics. 17, 6, p. 1055-1066

    Research output: Contribution to journalReview article

  14. Leucocyte recruitment and molecular fortification of keratinocytes triggered by streptococcal M1 protein

    Persson, S. T., Hauri, S., Johan Malmström & Heiko Herwald, 2018, In : Cellular Microbiology. 20, 1, e12792.

    Research output: Contribution to journalArticle

  15. 2017
  16. Comprehensive Proteomic Characterization of Ontogenic Changes in Hematopoietic Stem and Progenitor Cells

    Maria Jassinskaja, Johansson, E., Trine Ahn Kristiansen, Hugo Åkerstrand, Sjöholm, K., Hauri, S., Johan Malmström, Joan Yuan & Jenny Hansson, 2017 Dec 12, In : Cell Reports. 21, 11, p. 3285-3297 13 p.

    Research output: Contribution to journalArticle

  17. Improvements in Mass Spectrometry Assay Library Generation for Targeted Proteomics

    Teleman, J., Hauri, S. & Johan Malmström, 2017 Jul 7, In : Journal of Proteome Research. 16, 7, p. 2384-2392 9 p.

    Research output: Contribution to journalArticle

  18. Meru couples planar cell polarity with apical-basal polarity during asymmetric cell division

    Banerjee, J. J., Aerne, B. L., Holder, M. V., Hauri, S., Gstaiger, M. & Tapon, N., 2017 Jun 30, In : eLife. 6, e25014.

    Research output: Contribution to journalArticle

  19. A holistic approach to host-pathogen interactions: Detecting the large to unravel the small

    Sjöholm, K., 2017 May 4, 1 ed. Lund: Department of Immunotechnology, Lund University. 76 p.

    Research output: ThesisDoctoral Thesis (compilation)

  20. Analysis of bacterial surface interactions with mass spectrometry-based proteomics

    Christofer Karlsson, Teleman, J. & Johan Malmström, 2017, Methods in Molecular Biology. Humana Press, Vol. 1535. p. 17-24 8 p. (Methods in Molecular Biology; vol. 1535).

    Research output: Chapter in Book/Report/Conference proceedingBook chapter

  21. Increased deposition of glycosaminoglycans and altered structure of heparan sulfate in idiopathic pulmonary fibrosis

    Gunilla Westergren-Thorsson, Hedström, U., Nybom, A., Emil Tykesson, Åhrman, E., Hornfelt, M., Maccarana, M., van Kuppevelt, T. H., Dellgren, G., Marie Wildt, Zhou, X-H., Leif Eriksson, Leif Bjermer & Oskar Hallgren, 2017, In : International Journal of Biochemistry and Cell Biology. 83, p. 27-38 12 p.

    Research output: Contribution to journalArticle

  22. The TLR2 Antagonist Staphylococcal Superantigen-Like Protein 3 Acts as a Virulence Factor to Promote Bacterial Pathogenicity in vivo

    Koymans, K. J., Goldmann, O., Christofer A Q Karlsson, Sital, W., Thänert, R., Bisschop, A., Vrieling, M., Johan Malmström, Kessel, K. P. M., de Haas, C. J. C., van Strijp, J. A. G. & Medina, E., 2017, In : Journal of Innate Immunity. 9, p. 561-573

    Research output: Contribution to journalArticle

  23. 2016
  24. Proteomic profiling of bacterial host adaptation: Racing the Red Queen

    Kilsgård, O., 2016 Nov 7, Lund: Department of Immunotechnology, Lund University.

    Research output: ThesisDoctoral Thesis (compilation)

  25. Quantitative mass spectrometry to study inflammatory cartilage degradation and resulting interactions with the complement system

    Furst, C. M., Åhrman, E., Bratteby, K., Waldemarson, S., Johan Malmström & Anna M. Blom, 2016 Oct 15, In : Journal of Immunology. 197, 8, p. 3415-3424 10 p.

    Research output: Contribution to journalArticle

  26. Dinosaur: A Refined Open-Source Peptide MS Feature Detector

    Teleman, J., Chawade, A., Sandin, M., Fredrik Levander & Johan Malmström, 2016 Jul 1, In : Journal of Proteome Research. 15, 7, p. 2143-2151 9 p.

    Research output: Contribution to journalArticle

  27. Cancer associated proteins in blood plasma: Determining normal variation

    Stenemo, M., Teleman, J., Martin Sjöström, Grubb, G., Erik Malmström, Johan Malmström & Emma Niméus, 2016, In : Proteomics. 16, 13, p. 1928-1937 10 p.

    Research output: Contribution to journalArticle

  28. Structure and Interactions of a Dimeric Variant of sHIP, a Novel Virulence Determinant of Streptococcus pyogenes.

    Diehl, C., Wisniewska, M., Inga-Maria Frick, Streicher, W., Lars Björck, Johan Malmström & Wikström, M., 2016, In : Frontiers in Microbiology. 7, 95.

    Research output: Contribution to journalArticle

  29. 2015
  30. A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery

    Martin Sjöström, Ossola, R., Breslin, T., Rinner, O., Malmstroem, L., Schmidt, A., Aebersold, R., Johan Malmström & Emma Niméus, 2015, In : Journal of Proteome Research. 14, 7, p. 2807-2818

    Research output: Contribution to journalArticle

  31. Complete Removal of Extracellular IgG Antibodies in a Randomized Dose-Escalation Phase I Study with the Bacterial Enzyme IdeS - A Novel Therapeutic Opportunity.

    Winstedt, L., Järnum, S., Nordahl, E. A., Olsson, A., Runström, A., Bockermann, R., Christofer Karlsson, Johan Malmström, Samuelsson Palmgren, G., Malmqvist, U., Lars Björck & Kjellman, C., 2015, In : PLoS ONE. 10, 7, e0132011.

    Research output: Contribution to journalArticle

  32. Data Processing Has Major Impact on the Outcome of Quantitative Label-Free LC-MS Analysis

    Chawade, A., Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2015, In : Journal of Proteome Research. 14, 2, p. 676-687

    Research output: Contribution to journalArticle

  33. Development of Phage-Based Antibody Fragment Reagents for Affinity Enrichment of Bacterial Immunoglobulin G Binding Proteins.

    Säll, A., Sjöholm, K., Waldemarson, S., Lotta Happonen, Christofer Karlsson, Persson, H. & Johan Malmström, 2015, In : Journal of Proteome Research. 14, 11, p. 4704-4713

    Research output: Contribution to journalArticle

  34. DIANA - algorithmic improvements for analysis of data-independent acquisition MS data.

    Teleman, J., Röst, H., Rosenberger, G., Schmitt, U., Malmström, L., Johan Malmström & Fredrik Levander, 2015, In : Bioinformatics. 31, 4, p. 555-562

    Research output: Contribution to journalArticle

  35. Quantitative proteogenomics of human pathogens using DIA-MS.

    Malmström, L., Anahita Bakochi, Svensson Birkedal, G., Kilsgård, O., Lantz, H., Petersson, A. C., Hauri, S., Christofer Karlsson & Johan Malmström, 2015, In : Journal of Proteomics. 129, p. 98-107

    Research output: Contribution to journalArticle

  36. 2014
  37. Data processing methods and quality control strategies for label-free LC-MS protein quantification.

    Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2014, In : Biochimica et biophysica acta. 1844, 1, p. 29-41

    Research output: Contribution to journalReview article

  38. Functional and Structural Properties of a Novel Protein and Virulence Factor (sHIP) in Streptococcus pyogenes.

    Wisniewska, M., Lotta Happonen, Fredrik Kahn, Varjosalo, M., Malmström, L., Rosenberger, G., Christofer Karlsson, Cazzamali, G., Pozdnyakova, I., Inga-Maria Frick, Lars Björck, Streicher, W., Johan Malmström & Wikström, M., 2014, In : Journal of Biological Chemistry. 289, 26, p. 18175-18188

    Research output: Contribution to journalArticle

  39. Numerical compression schemes for proteomics mass spectrometry data.

    Teleman, J., Dowsey, A. W., Gonzalez-Galarza, F. F., Perkins, S., Pratt, B., Rost, H., Malmstrom, L., Johan Malmström, Jones, A. R., Deutsch, E. W. & Levander, F., 2014, In : Molecular & Cellular Proteomics. 13, 6, p. 1537-1542

    Research output: Contribution to journalArticle

  40. OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.

    Röst, H. L., Rosenberger, G., Navarro, P., Gillet, L., Miladinović, S. M., Schubert, O. T., Wolski, W., Collins, B. C., Johan Malmström, Malmström, L. & Aebersold, R., 2014, In : Nature Biotechnology. 32, 3, p. 219-223

    Research output: Contribution to journalArticle

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