Fredrik Levander

Senior Lecturer
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  1. 2001
  2. Metabolic Engineering of Disaccharide Catabolism for Polysaccharide Formation in Lactococcus lactis and Streptococcus thermophilus

    Fredrik Levander, 2001, Applied Microbiology (LTH). 104 p.

    Research output: ThesisDoctoral Thesis (compilation)

  3. 2002
  4. 2003
  5. 2004
  6. Acidic proteome of growing and resting Lactococcus lactis metabolizing maltose

    Palmfeldt, J., Fredrik Levander, Bärbel Hahn-Hägerdal & Peter James, 2004, In : Proteomics. 4, 12, p. 3881-3898

    Research output: Contribution to journalArticle

  7. Automated methods for improved protein identification by peptide mass fingerprinting

    Fredrik Levander, Rognvaldsson, T., Samuelsson, J. & Peter James, 2004, In : Proteomics. 4, 9, p. 2594-2601

    Research output: Contribution to journalArticle

  8. Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting

    Samuelsson, J., Dalevi, D., Fredrik Levander & Rognvaldsson, T., 2004, In : Bioinformatics. 20, 18, p. 3628-3635

    Research output: Contribution to journalArticle

  9. 2005
  10. Mass spectrometry for protein identification.

    Fredrik Levander & Peter James, 2005, Proteomics & peptidomics – New technology platforms elucidating biology. Marko-Varga, G. (ed.). Elsevier, p. 429-447

    Research output: Chapter in Book/Report/Conference proceedingBook chapter

  11. The protein expression of Streptococcus pyogenes is significantly influenced by human plasma.

    Johansson, B., Fredrik Levander, von Pawel-Rammingen, U., Berggård, T., Lars Björck & Peter James, 2005, In : Journal of Proteome Research. 4, 6, p. 2302-2311

    Research output: Contribution to journalArticle

  12. Tutorial on protein fingerprinting

    Fredrik Levander, 2005, Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. John Wiley & Sons

    Research output: Chapter in Book/Report/Conference proceedingBook chapter

  13. 2006
  14. Chemical derivatization of phosphoserine and phosphothreonine containing peptides to increase sensitivity for MALDI-based analysis and for selectivity of MS/MS analysis

    Arrigoni, G., Resjö, S., Fredrik Levander, Nilsson, R., Eva Degerman, Quadroni, M., Pinna, LA. & Peter James, 2006, In : Proteomics. 6, 3, p. 757-766

    Research output: Contribution to journalArticle

  15. Keeping track of gel-based proteomics experiments using the open-source Proteios software

    Fredrik Levander, Krogh, M., Wårell, K., Gärdén, P., Peter James & Jari Häkkinen, 2006.

    Research output: Contribution to conferenceAbstract

  16. 2007
  17. Automated reporting from gel-based proteomics experiments using the open source Proteios database application

    Fredrik Levander, Krogh, M., Wårell, K., Gärdén, P., Peter James & Jari Häkkinen, 2007, In : Proteomics. 7, 5, p. 668-674

    Research output: Contribution to journalArticle

  18. Development of reagents for differential protein quantitation by subtractive parent (precursor) ion scanning

    Wåhlander, Å., Arrigoni, G., Wårell, K., Fredrik Levander, Palmgren, R., Maloisel, J-L., Busson, P. & Peter James, 2007, In : Journal of Proteome Research. 6, 3, p. 1101-1113

    Research output: Contribution to journalArticle

  19. Proteomics Data Collection - the 1st ProDaC workshop 26 April 2007 Ecole Normale Supérieur, Lyon, France.

    Eisenacher, M., Hardt, T., Hamacher, M., Martens, L., Jari Häkkinen, Fredrik Levander, Apweiler, R., Meyer, H. E. & Stephan, C., 2007, In : Proteomics. p. 3034-3037

    Research output: Contribution to journalArticle

  20. 2008
  21. Comparative Study Of Gene Expression And Protein Expression Profiling In Gliomas

    Persson, O., Brynnel, U., Fredrik Levander, Widegren, B., Krogh, M. & Leif Salford, 2008, In : Neuro-Oncology. 10, 6, p. 1110-1110

    Research output: Contribution to journalPublished meeting abstract

  22. Human Proteinpedia enables sharing of human protein data.

    Mathivanan, S., Ahmed, M., Ahn, N. G., Alexandre, H., Amanchy, R., Andrews, P. C., Bader, J. S., Balgley, B. M., Bantscheff, M., Bennett, K. L., Björling, E., Blagoev, B., Bose, R., Brahmachari, S. K., Burlingame, A. S., Bustelo, X. R., Cagney, G., Cantin, G. T., Cardasis, H. L., Celis, J. E. & 140 othersChaerkady, R., Chu, F., Cole, P. A., Costello, C. E., Cotter, R. J., Crockett, D., DeLany, J. P., De Marzo, A. M., DeSouza, L. V., Deutsch, E. W., Dransfield, E., Drewes, G., Droit, A., Dunn, M. J., Elenitoba-Johnson, K., Ewing, R. M., Van Eyk, J., Faca, V., Falkner, J., Fang, X., Fenselau, C., Figeys, D., Gagné, P., Gelfi, C., Gevaert, K., Gimble, J. M., Gnad, F., Goel, R., Gromov, P., Hanash, S. M., Hancock, W. S., Harsha, H. C., Hart, G., Hays, F., He, F., Hebbar, P., Helsens, K., Hermeking, H., Hide, W., Hjernø, K., Hochstrasser, D. F., Hofmann, O., Horn, D. M., Hruban, R. H., Ibarrola, N., Peter James, Jensen, O. N., Jensen, P. H., Jung, P., Kandasamy, K., Kheterpal, I., Kikuno, R. F., Korf, U., Körner, R., Kuster, B., Kwon, M-S., Lee, H-J., Lee, Y-J., Lefevre, M., Lehvaslaiho, M., Lescuyer, P., Fredrik Levander, Lim, M. S., Löbke, C., Loo, J. A., Mann, M., Martens, L., Martinez-Heredia, J., McComb, M., McRedmond, J., Mehrle, A., Menon, R., Miller, C. A., Mischak, H., Mohan, S. S., Mohmood, R., Molina, H., Moran, M. F., Morgan, J. D., Moritz, R., Morzel, M., Muddiman, D. C., Nalli, A., Navarro, J. D., Neubert, T. A., Ohara, O., Oliva, R., Omenn, G. S., Oyama, M., Paik, Y-K., Pennington, K., Pepperkok, R., Periaswamy, B., Petricoin, E. F., Poirier, G. G., Prasad, T. S. K., Purvine, S. O., Rahiman, B. A., Ramachandran, P., Ramachandra, Y. L., Rice, R. H., Rick, J., Ronnholm, R. H., Salonen, J., Sanchez, J-C., Sayd, T., Seshi, B., Shankari, K., Sheng, S. J., Shetty, V., Shivakumar, K., Simpson, R. J., Sirdeshmukh, R., Siu, K. W. M., Smith, J. C., Smith, R. D., States, D. J., Sugano, S., Sullivan, M., Superti-Furga, G., Takatalo, M., Thongboonkerd, V., Trinidad, J. C., Uhlen, M., Vandekerckhove, J., Vasilescu, J., Veenstra, T. D., Vidal-Taboada, J-M., Mauno Vihinen, Wait, R., Wang, X., Wiemann, S., Wu, B., Xu, T., Yates, J. R., Zhong, J., Zhou, M., Zhu, Y., Zurbig, P. & Pandey, A., 2008, In : Nature Biotechnology. 26, 2, p. 164-167

    Research output: Contribution to journalLetter

  23. Proteomics Data Collection - 2nd ProDaC Workshop 5 October 2007, Seoul, Korea

    Eisenacher, M., Hardt, T., Hamacher, M., Martens, L., Fredrik Levander, Jari Häkkinen, Apweiler, R., Mayer, H. E. & Stephan, C., 2008, Proteomics, 8, 7, p. 1326-1330.

    Research output: Contribution to specialist publication or newspaperSpecialist publication article

  24. Wavelet-based method for noise characterization and rejection in high-performance liquid chromatography coupled to mass spectrometry

    Cappadona, S., Fredrik Levander, Bentz, M., Peter James, Cerutti, S. & Pattini, L., 2008, In : Analytical Chemistry. 80, 13, p. 4960-4968

    Research output: Contribution to journalArticle

  25. 2009
  26. A label-free nano-liquid chromatography-mass spectrometry approach for quantitative serum peptidomics in Crohn's disease patients.

    Nanni, P., Fredrik Levander, Roda, G., Caponi, A., Peter James & Roda, A., 2009, In : Journal of Chromatography. B. 877, 27, p. 3127-3136

    Research output: Contribution to journalArticle

  27. Differential proteomic analysis of HT29 Cl.16E cells line and intestinal epithelial cells by LC ESI/QTOF mass spectrometry.

    Nanni, P., Mezzanottea, L., Roda, G., Caponi, A., Fredrik Levander, Peter James & Roda, A., 2009, In : Journal of Proteomics. 72, 5, p. 865-873

    Research output: Contribution to journalArticle

  28. Getting a grip on proteomics data - Proteomics Data Collection (ProDaC)

    Eisenacher, M., Martens, L., Hardt, T., Kohl, M., Barsnes, H., Helsens, K., Jari Häkkinen, Fredrik Levander, Aebersold, R. & al, E., 2009, In : Proteomics. 9, 15, p. 3928-3933

    Research output: Contribution to journalArticle

  29. Proteome analysis of the xylose-fermenting mutant yeast strain TMB 3400.

    Karhumaa, K., Påhlman, A-K., Bärbel Hahn-Hägerdal, Fredrik Levander & Marie-Francoise Gorwa-Grauslund, 2009, In : Yeast. 26, 7, p. 371-382

    Research output: Contribution to journalArticle

  30. Proteomic expression analysis and comparison of protein and mRNA expression profiles in human malignant gliomas

    Persson, O., Brynnel, U., Fredrik Levander, Widegren, B., Leif Salford & Krogh, M., 2009, In : Proteomics Clinical Applications. 3, p. 83-94

    Research output: Contribution to journalArticle

  31. Proteomics data collection--4th ProDaC workshop 15 August 2008, Amsterdam, The Netherlands

    Eisenacher, M., Kohl, M., Martens, L., Barsnes, H., Hardt, T., Fredrik Levander, Jari Häkkinen, Apweiler, R., Meyer, H. E. & Stephan, C., 2009, In : Proteomics. 9, 2, p. 218-222

    Research output: Contribution to journalArticle

  32. Quantification of Membrane Proteins Using Nonspecific Protease Digestions

    Bendz, M., Carlsson Möller, M., Arrigoni, G., Wåhlander, Å., Stella, R., Cappadona, S., Fredrik Levander, Lars Hederstedt & Peter James, 2009, In : Journal of Proteome Research. 8, 12, p. 5666-5673

    Research output: Contribution to journalArticle

  33. The Proteios Software Environment: an extensible multiuser platform for management and analysis of proteomics data

    Jari Häkkinen, Vincic, G., Månsson, O., Wårell, K. & Fredrik Levander, 2009, In : Journal of Proteome Research. 8, 6, p. 3037-3043

    Research output: Contribution to journalArticle

  34. 2010
  35. Improved label-free LC-MS analysis by wavelet-based noise rejection

    Cappadona, S., Nanni, P., Benevento, M., Fredrik Levander, Versura, P., Roda, A., Cerutti, S. & Pattini, L., 2010, In : Journal of Biomedicine and Biotechnology. 2010

    Research output: Contribution to journalArticle

  36. 2011
  37. Facing challenges in proteomics today and in the coming decade: report of roundtable discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010

    Cox, J., Heeren, R. M. A., Peter James, Jorrin-Novo, J. V., Kolker, E., Fredrik Levander, Morrice, N., Picotti, P., Righetti, P. G., Sánchez, J-C., Turck, C. W., Zubarev, R., Alexandre, B. M., Corrales, F. J. & György Marko-Varga, 2011, In : Journal of Proteomics. 75, 1, p. 4-17

    Research output: Contribution to journalLetter

  38. Generic workflow for quality assessment of quantitative label-free LC-MS analysis

    Sandin, M., Krogh, M., Hansson, K. M. & Fredrik Levander, 2011, In : Proteomics. 11, 6, p. 1114-1124

    Research output: Contribution to journalArticle

  39. Hunting for Protein Markers of Hypoxia by Combining Plasma Membrane Enrichment with a New Approach to Membrane Protein Analysis

    Cifani, P., Bendz, M., Wårell, K., Hansson, K. M., Fredrik Levander, Sandin, M., Krogh, M., Ovenberger, M., Fredlund, E., Marica Vaapil, Alexander Pietras, Sven Påhlman & Peter James, 2011, In : Journal of Proteome Research. 10, 4, p. 1645-1656

    Research output: Contribution to journalArticle

  40. Laboratory data and sample management for proteomics.

    Jari Häkkinen & Fredrik Levander, 2011, Data Mining in Proteomics : From Standards to Applications. Hamacher, M., Eisenacher, M. & Stephan, C. (eds.). Springer, Vol. 696. p. 79-92 (Methods in Molecular Biology; vol. 696).

    Research output: Chapter in Book/Report/Conference proceedingBook chapter

  41. mzML - a community standard for mass Spectrometry data

    Martens, L., Chambers, M., Sturm, M., Kessner, D., Fredrik Levander & Shofstahl, J., 2011, In : Molecular & Cellular Proteomics. 10, 1, p. R110.000133.1-R110.000133.2

    Research output: Contribution to journalArticle

  42. 2012
  43. Critical Comparison of Multidimensional Separation Methods for Increasing Protein Expression Coverage

    Antberg, L., Cifani, P., Sandin, M., Fredrik Levander & Peter James, 2012, In : Journal of Proteome Research. 11, 5, p. 2644-2652

    Research output: Contribution to journalArticle

  44. Multimodel Pathway Enrichment Methods for Functional Evaluation of Expression Regulation.

    Kirik, U., Cifani, P., Albrekt, A-S., Malin Lindstedt, Anders Heyden & Fredrik Levander, 2012, In : Journal of Proteome Research. 11, 5, p. 2955-2967

    Research output: Contribution to journalArticle

  45. Relative Quantification of Membrane Proteins in Wild-Type and Prion Protein (PrP)-Knockout Cerebellar Granule Neurons

    Stella, R., Cifani, P., Peggion, C., Hansson, K. M., Lazzari, C., Bendz, M., Fredrik Levander, Sorgato, M. C., Bertoli, A. & Peter James, 2012, In : Journal of Proteome Research. 11, 2, p. 523-536

    Research output: Contribution to journalArticle

  46. TraML: a standard format for exchange of selected reaction monitoring transition lists

    Deutsch, E. W., Chambers, M., Neumann, S., Fredrik Levander, Binz, P-A., Shofstahl, J., Campbell, D. S., Mendoza, L., Ovelleiro, D., Helsens, K., Martens, L., Aebersold, R., Moritz, R. L. & Brusniak, M-Y., 2012, In : Molecular & Cellular Proteomics. 11, 4, p. R111.015040

    Research output: Contribution to journalArticle

  47. 2013
  48. An adaptive alignment algorithm for quality-controlled label-free LC-MS.

    Sandin, M., Ali, A., Hansson, K., Månsson, O., Andreasson, E., Resjö, S. & Fredrik Levander, 2013, In : Molecular & Cellular Proteomics. 12, 5, p. 1407-1420

    Research output: Contribution to journalArticle

  49. Automated quality control system for LC-SRM setups.

    Teleman, J., Sofia Waldemarson, Johan Malmström & Fredrik Levander, 2013, In : Journal of Proteomics. 95, Online 11 April 2013, p. 77-83

    Research output: Contribution to journalArticle

  50. Proteome of the nematode-trapping cells of the fungus Monacrosporium haptotylum.

    Andersson, K-M., Meerupati, T., Fredrik Levander, Friman, E., Dag Ahrén & Anders Tunlid, 2013, In : Applied and Environmental Microbiology. 79, 16, p. 4993-5004

    Research output: Contribution to journalArticle

  51. The HUPO proteomics standards initiative-mass spectrometry controlled vocabulary

    Mayer, G., Montecchi-Palazzi, L., Ovelleiro, D., Jones, A. R., Binz, P-A., Deutsch, E. W., Chambers, M., Kallhardt, M., Fredrik Levander, Shofstahl, J., Orchard, S., Vizcaino, J. A., Hermjakob, H., Stephan, C., Meyer, H. E. & Eisenacher, M., 2013, In : Database: the Journal of Biological Databases and Curation. p. bat009

    Research output: Contribution to journalArticle

  52. 2014
  53. Data processing methods and quality control strategies for label-free LC-MS protein quantification.

    Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2014, In : Biochimica et biophysica acta. 1844, 1, p. 29-41

    Research output: Contribution to journalReview article

  54. Framtidens mat – om husdjursavel och växtförädling

    Lehrman, A. (ed.), Lehrman, A., Chatzopoulou, S., Feng, L., Forabosco, F., Jonas, E., Karantininis, K., Fredrik Levander, Nicolia, A., Rydhmer, L., Röcklinsberg, H., Sandin, P., Sundström, J. & Zhu, L-H., 2014, SLU, Uppsala. 88 p.

    Research output: Book/ReportBook

  55. Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets

    Chawade, A., Alexandersson, E. & Fredrik Levander, 2014, In : Journal of Proteome Research. 13, 6, p. 3114-3120

    Research output: Contribution to journalArticle

  56. Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans

    Burra, D. D., Berkowitz, O., Hedley, P. E., Morris, J., Resjoe, S., Fredrik Levander, Liljeroth, E., Andreasson, E. & Alexandersson, E., 2014, In : BMC Plant Biology. 14, 254.

    Research output: Contribution to journalArticle

  57. Proteomics and transcriptomics of the BABA-induced resistance response in potato using a novel functional annotation approach

    Bengtsson, T., Weighill, D., Proux-Wera, E., Fredrik Levander, Resjo, S., Burra, D. D., Moushib, L., Hedley, P. E., Liljeroth, E., Jacobson, D., Alexandersson, E. & Andreasson, E., 2014, In : BMC Genomics. 15

    Research output: Contribution to journalArticle

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