Fredrik Levander

Senior Lecturer
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  1. Aberrant activation of the PI3K/mTOR pathway promotes resistance to sorafenib in AML

    O Lindblad, Cordero, E., Puissant, A., Macaulay, L., Ramos, A., Kabir, N. N., J Sun, J Vallon-Christersson, Haraldsson, K., Hemann, M. T., Åke Borg, F Levander, Stegmaier, K., K Pietras, L Rönnstrand & J U Kazi, 2016 Sep 29, In : Oncogene. 35, 39, p. 5119-5131 13 p.

    Research output: Contribution to journalArticle

  2. Acidic proteome of growing and resting Lactococcus lactis metabolizing maltose

    Palmfeldt, J., Fredrik Levander, Bärbel Hahn-Hägerdal & Peter James, 2004, In : Proteomics. 4, 12, p. 3881-3898

    Research output: Contribution to journalArticle

  3. A community proposal to integrate proteomics activities in ELIXIR

    Vizcaíno, J. A., Walzer, M., Jiménez, R. C., Bittremieux, W., Bouyssié, D., Carapito, C., Corrales, F., Ferro, M., Heck, A. J. R., Horvatovich, P., Hubalek, M., Lane, L., Laukens, K., Levander, F., Lisacek, F., Novak, P., Palmblad, M., Piovesan, D., Pühler, A., Schwämmle, V. & 6 othersValkenborg, D., van Rijswijk, M., Vondrasek, J., Eisenacher, M., Martens, L. & Kohlbacher, O., 2017, In : F1000Research. 6, 875.

    Research output: Contribution to journalArticle

  4. A label-free nano-liquid chromatography-mass spectrometry approach for quantitative serum peptidomics in Crohn's disease patients.

    Nanni, P., Fredrik Levander, Roda, G., Caponi, A., Peter James & Roda, A., 2009, In : Journal of Chromatography. B. 877, 27, p. 3127-3136

    Research output: Contribution to journalArticle

  5. An adaptive alignment algorithm for quality-controlled label-free LC-MS.

    Sandin, M., Ali, A., Hansson, K., Månsson, O., Andreasson, E., Resjö, S. & Fredrik Levander, 2013, In : Molecular & Cellular Proteomics. 12, 5, p. 1407-1420

    Research output: Contribution to journalArticle

  6. Antibody-encoding repertoires of bone marrow and peripheral blood-a focus on IgE

    Levin, M., Fredrik Levander, Palmason, R., Greiff, L. & Mats Ohlin, 2017, In : Journal of Allergy and Clinical Immunology. 139, 3, p. 1026-1030

    Research output: Contribution to journalLetter

  7. Antibody heavy chain variable domains of different germline gene origins diversify through different paths

    Kirik, U., Persson, H., Fredrik Levander, Greiff, L. & Mats Ohlin, 2017 Nov 13, In : Frontiers in Immunology. 8, NOV, 1433.

    Research output: Contribution to journalArticle

  8. Automated methods for improved protein identification by peptide mass fingerprinting

    Fredrik Levander, Rognvaldsson, T., Samuelsson, J. & Peter James, 2004, In : Proteomics. 4, 9, p. 2594-2601

    Research output: Contribution to journalArticle

  9. Automated quality control system for LC-SRM setups.

    Teleman, J., Sofia Waldemarson, Johan Malmström & Fredrik Levander, 2013, In : Journal of Proteomics. 95, Online 11 April 2013, p. 77-83

    Research output: Contribution to journalArticle

  10. Automated reporting from gel-based proteomics experiments using the open source Proteios database application

    Fredrik Levander, Krogh, M., Wårell, K., Gärdén, P., Peter James & Jari Häkkinen, 2007, In : Proteomics. 7, 5, p. 668-674

    Research output: Contribution to journalArticle

  11. BEX1 acts as a tumor suppressor in acute myeloid leukemia.

    Oscar Lindblad, Li, T., Su, X., Jianmin Sun, Kabir, N. N., Fredrik Levander, Zhao, H., Lu, G., Lars Rönnstrand & Julhash U. Kazi, 2015, In : Oncotarget. 6, 25, p. 21395-21405

    Research output: Contribution to journalArticle

  12. Chemical derivatization of phosphoserine and phosphothreonine containing peptides to increase sensitivity for MALDI-based analysis and for selectivity of MS/MS analysis

    Arrigoni, G., Resjö, S., Fredrik Levander, Nilsson, R., Eva Degerman, Quadroni, M., Pinna, LA. & Peter James, 2006, In : Proteomics. 6, 3, p. 757-766

    Research output: Contribution to journalArticle

  13. Comparative membrane-associated proteomics of three different immune reactions in potato

    Burra, D. D., Lenman, M., Fredrik Levander, Resjö, S. & Andreasson, E., 2018 Feb 10, In : International Journal of Molecular Sciences. 19, 2, 538.

    Research output: Contribution to journalArticle

  14. Comparative proteomic analysis of hyphae and germinating cysts of Phytophthora pisi and Phytophthora sojae.

    Hosseini, S., Resjö, S., Liu, Y., Durling, M., Heyman, F., Fredrik Levander, Liu, Y., Elfstrand, M., Funck Jensen, D., Andreasson, E. & Karlsson, M., 2015, In : Journal of Proteomics. 117, p. 24-40

    Research output: Contribution to journalArticle

  15. Comparative Study Of Gene Expression And Protein Expression Profiling In Gliomas

    Persson, O., Brynnel, U., Fredrik Levander, Widegren, B., Krogh, M. & Leif Salford, 2008, In : Neuro-Oncology. 10, 6, p. 1110-1110

    Research output: Contribution to journalPublished meeting abstract

  16. Critical Comparison of Multidimensional Separation Methods for Increasing Protein Expression Coverage

    Antberg, L., Cifani, P., Sandin, M., Fredrik Levander & Peter James, 2012, In : Journal of Proteome Research. 11, 5, p. 2644-2652

    Research output: Contribution to journalArticle

  17. Data on haplotype-supported immunoglobulin germline gene inference

    Kirik, U., Greiff, L., Fredrik Levander & Mats Ohlin, 2017 Aug 1, In : Data in Brief. 13, p. 620-640 21 p.

    Research output: Contribution to journalArticle

  18. Data Processing Has Major Impact on the Outcome of Quantitative Label-Free LC-MS Analysis

    Chawade, A., Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2015, In : Journal of Proteome Research. 14, 2, p. 676-687

    Research output: Contribution to journalArticle

  19. Data processing methods and quality control strategies for label-free LC-MS protein quantification.

    Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2014, In : Biochimica et biophysica acta. 1844, 1, p. 29-41

    Research output: Contribution to journalReview article

  20. Development of reagents for differential protein quantitation by subtractive parent (precursor) ion scanning

    Wåhlander, Å., Arrigoni, G., Wårell, K., Fredrik Levander, Palmgren, R., Maloisel, J-L., Busson, P. & Peter James, 2007, In : Journal of Proteome Research. 6, 3, p. 1101-1113

    Research output: Contribution to journalArticle

  21. DIANA - algorithmic improvements for analysis of data-independent acquisition MS data.

    Teleman, J., Röst, H., Rosenberger, G., Schmitt, U., Malmström, L., Johan Malmström & Fredrik Levander, 2015, In : Bioinformatics. 31, 4, p. 555-562

    Research output: Contribution to journalArticle

  22. Differential proteomic analysis of HT29 Cl.16E cells line and intestinal epithelial cells by LC ESI/QTOF mass spectrometry.

    Nanni, P., Mezzanottea, L., Roda, G., Caponi, A., Fredrik Levander, Peter James & Roda, A., 2009, In : Journal of Proteomics. 72, 5, p. 865-873

    Research output: Contribution to journalArticle

  23. Dinosaur: A Refined Open-Source Peptide MS Feature Detector

    Teleman, J., Chawade, A., Sandin, M., Fredrik Levander & Johan Malmström, 2016 Jul 1, In : Journal of Proteome Research. 15, 7, p. 2143-2151 9 p.

    Research output: Contribution to journalArticle

  24. Facing challenges in proteomics today and in the coming decade: report of roundtable discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010

    Cox, J., Heeren, R. M. A., Peter James, Jorrin-Novo, J. V., Kolker, E., Fredrik Levander, Morrice, N., Picotti, P., Righetti, P. G., Sánchez, J-C., Turck, C. W., Zubarev, R., Alexandre, B. M., Corrales, F. J. & György Marko-Varga, 2011, In : Journal of Proteomics. 75, 1, p. 4-17

    Research output: Contribution to journalLetter

  25. Framtidens mat – om husdjursavel och växtförädling

    Lehrman, A. (ed.), Lehrman, A., Chatzopoulou, S., Feng, L., Forabosco, F., Jonas, E., Karantininis, K., Fredrik Levander, Nicolia, A., Rydhmer, L., Röcklinsberg, H., Sandin, P., Sundström, J. & Zhu, L-H., 2014, SLU, Uppsala. 88 p.

    Research output: Book/ReportBook

  26. Generic workflow for quality assessment of quantitative label-free LC-MS analysis

    Sandin, M., Krogh, M., Hansson, K. M. & Fredrik Levander, 2011, In : Proteomics. 11, 6, p. 1114-1124

    Research output: Contribution to journalArticle

  27. Getting a grip on proteomics data - Proteomics Data Collection (ProDaC)

    Eisenacher, M., Martens, L., Hardt, T., Kohl, M., Barsnes, H., Helsens, K., Jari Häkkinen, Fredrik Levander, Aebersold, R. & al, E., 2009, In : Proteomics. 9, 15, p. 3928-3933

    Research output: Contribution to journalArticle

  28. Human Proteinpedia enables sharing of human protein data.

    Mathivanan, S., Ahmed, M., Ahn, N. G., Alexandre, H., Amanchy, R., Andrews, P. C., Bader, J. S., Balgley, B. M., Bantscheff, M., Bennett, K. L., Björling, E., Blagoev, B., Bose, R., Brahmachari, S. K., Burlingame, A. S., Bustelo, X. R., Cagney, G., Cantin, G. T., Cardasis, H. L., Celis, J. E. & 140 othersChaerkady, R., Chu, F., Cole, P. A., Costello, C. E., Cotter, R. J., Crockett, D., DeLany, J. P., De Marzo, A. M., DeSouza, L. V., Deutsch, E. W., Dransfield, E., Drewes, G., Droit, A., Dunn, M. J., Elenitoba-Johnson, K., Ewing, R. M., Van Eyk, J., Faca, V., Falkner, J., Fang, X., Fenselau, C., Figeys, D., Gagné, P., Gelfi, C., Gevaert, K., Gimble, J. M., Gnad, F., Goel, R., Gromov, P., Hanash, S. M., Hancock, W. S., Harsha, H. C., Hart, G., Hays, F., He, F., Hebbar, P., Helsens, K., Hermeking, H., Hide, W., Hjernø, K., Hochstrasser, D. F., Hofmann, O., Horn, D. M., Hruban, R. H., Ibarrola, N., Peter James, Jensen, O. N., Jensen, P. H., Jung, P., Kandasamy, K., Kheterpal, I., Kikuno, R. F., Korf, U., Körner, R., Kuster, B., Kwon, M-S., Lee, H-J., Lee, Y-J., Lefevre, M., Lehvaslaiho, M., Lescuyer, P., Fredrik Levander, Lim, M. S., Löbke, C., Loo, J. A., Mann, M., Martens, L., Martinez-Heredia, J., McComb, M., McRedmond, J., Mehrle, A., Menon, R., Miller, C. A., Mischak, H., Mohan, S. S., Mohmood, R., Molina, H., Moran, M. F., Morgan, J. D., Moritz, R., Morzel, M., Muddiman, D. C., Nalli, A., Navarro, J. D., Neubert, T. A., Ohara, O., Oliva, R., Omenn, G. S., Oyama, M., Paik, Y-K., Pennington, K., Pepperkok, R., Periaswamy, B., Petricoin, E. F., Poirier, G. G., Prasad, T. S. K., Purvine, S. O., Rahiman, B. A., Ramachandran, P., Ramachandra, Y. L., Rice, R. H., Rick, J., Ronnholm, R. H., Salonen, J., Sanchez, J-C., Sayd, T., Seshi, B., Shankari, K., Sheng, S. J., Shetty, V., Shivakumar, K., Simpson, R. J., Sirdeshmukh, R., Siu, K. W. M., Smith, J. C., Smith, R. D., States, D. J., Sugano, S., Sullivan, M., Superti-Furga, G., Takatalo, M., Thongboonkerd, V., Trinidad, J. C., Uhlen, M., Vandekerckhove, J., Vasilescu, J., Veenstra, T. D., Vidal-Taboada, J-M., Mauno Vihinen, Wait, R., Wang, X., Wiemann, S., Wu, B., Xu, T., Yates, J. R., Zhong, J., Zhou, M., Zhu, Y., Zurbig, P. & Pandey, A., 2008, In : Nature Biotechnology. 26, 2, p. 164-167

    Research output: Contribution to journalLetter

  29. Hunting for Protein Markers of Hypoxia by Combining Plasma Membrane Enrichment with a New Approach to Membrane Protein Analysis

    Cifani, P., Bendz, M., Wårell, K., Hansson, K. M., Fredrik Levander, Sandin, M., Krogh, M., Ovenberger, M., Fredlund, E., Marica Vaapil, Alexander Pietras, Sven Påhlman & Peter James, 2011, In : Journal of Proteome Research. 10, 4, p. 1645-1656

    Research output: Contribution to journalArticle

  30. Improved label-free LC-MS analysis by wavelet-based noise rejection

    Cappadona, S., Nanni, P., Benevento, M., Fredrik Levander, Versura, P., Roda, A., Cerutti, S. & Pattini, L., 2010, In : Journal of Biomedicine and Biotechnology. 2010

    Research output: Contribution to journalArticle

  31. In vitro evolution of antibodies inspired by in vivo evolution

    Persson, H., Kirik, U., Thörnqvist, L., Greiff, L., Fredrik Levander & Mats Ohlin, 2018 Jun 21, In : Frontiers in Immunology. 9, JUN, 1391.

    Research output: Contribution to journalArticle

  32. Is label-free LC-MS/MS ready for biomarker discovery?

    Sandin, M., Chawade, A. & Fredrik Levander, 2015, In : Proteomics Clinical Applications. 9, 3-4, p. 289-294

    Research output: Contribution to journalDebate/Note/Editorial

  33. Keeping track of gel-based proteomics experiments using the open-source Proteios software

    Fredrik Levander, Krogh, M., Wårell, K., Gärdén, P., Peter James & Jari Häkkinen, 2006.

    Research output: Contribution to conferenceAbstract

  34. Laboratory data and sample management for proteomics.

    Jari Häkkinen & Fredrik Levander, 2011, Data Mining in Proteomics : From Standards to Applications. Hamacher, M., Eisenacher, M. & Stephan, C. (eds.). Springer, Vol. 696. p. 79-92 (Methods in Molecular Biology; vol. 696).

    Research output: Chapter in Book/Report/Conference proceedingBook chapter

  35. Mass spectrometry for protein identification.

    Fredrik Levander & Peter James, 2005, Proteomics & peptidomics – New technology platforms elucidating biology. Marko-Varga, G. (ed.). Elsevier, p. 429-447

    Research output: Chapter in Book/Report/Conference proceedingBook chapter

  36. Metabolic Engineering of Disaccharide Catabolism for Polysaccharide Formation in Lactococcus lactis and Streptococcus thermophilus

    Fredrik Levander, 2001, Applied Microbiology (LTH). 104 p.

    Research output: ThesisDoctoral Thesis (compilation)

  37. Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting

    Samuelsson, J., Dalevi, D., Fredrik Levander & Rognvaldsson, T., 2004, In : Bioinformatics. 20, 18, p. 3628-3635

    Research output: Contribution to journalArticle

  38. Multimodel Pathway Enrichment Methods for Functional Evaluation of Expression Regulation.

    Kirik, U., Cifani, P., Albrekt, A-S., Malin Lindstedt, Anders Heyden & Fredrik Levander, 2012, In : Journal of Proteome Research. 11, 5, p. 2955-2967

    Research output: Contribution to journalArticle

  39. mzML - a community standard for mass Spectrometry data

    Martens, L., Chambers, M., Sturm, M., Kessner, D., Fredrik Levander & Shofstahl, J., 2011, In : Molecular & Cellular Proteomics. 10, 1, p. R110.000133.1-R110.000133.2

    Research output: Contribution to journalArticle

  40. NLK-mediated phosphorylation of HDAC1 negatively regulates Wnt signaling

    Masoumi, K. C., Renée Daams, Wondossen Sime, Valentina Siino, Ke, H., Fredrik Levander & Ramin Massoumi, 2017 Jan 15, In : Molecular Biology of the Cell. 28, 2, p. 346-355 10 p.

    Research output: Contribution to journalArticle

  41. Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets

    Chawade, A., Alexandersson, E. & Fredrik Levander, 2014, In : Journal of Proteome Research. 13, 6, p. 3114-3120

    Research output: Contribution to journalArticle

  42. Patient-derived xenograft models reveal intratumor heterogeneity and temporal stability in neuroblastoma

    Braekeveldt, N., Von Stedingk, K., Fransson, S., Martinez-Monleon, A., Lindgren, D., Axelson, H., Levander, F., Willforss, J., Hansson, K., Øra, I., Backman, T., Börjesson, A., Beckman, S., Esfandyari, J., Berbegall, A. P., Noguera, R., Karlsson, J., Koster, J., Martinsson, T., Gisselsson, D. & 2 othersSven Påhlman & Daniel Bexell, 2018, In : Cancer Research. 78, 20, p. 5958-5969 12 p.

    Research output: Contribution to journalArticle

  43. Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans

    Burra, D. D., Berkowitz, O., Hedley, P. E., Morris, J., Resjoe, S., Fredrik Levander, Liljeroth, E., Andreasson, E. & Alexandersson, E., 2014, In : BMC Plant Biology. 14, 254.

    Research output: Contribution to journalArticle

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