Fredrik Levander

Senior Lecturer
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  1. 2019
  2. Towards a standardized bioinformatics infrastructure for N- and O-glycomics

    Rojas-Macias, M. A., Mariethoz, J., Andersson, P., Jin, C., Venkatakrishnan, V., Aoki, N. P., Shinmachi, D., Ashwood, C., Madunic, K., Zhang, T., Miller, R. L., Horlacher, O., Struwe, W. B., Watanabe, Y., Okuda, S., Levander, F., Kolarich, D., Rudd, P. M., Wuhrer, M., Kettner, C. & 4 others, Packer, N. H., Aoki-Kinoshita, K. F., Lisacek, F. & Karlsson, N. G., 2019 Jul 22, In : Nature Communications. 10, 1, 3275.

    Research output: Contribution to journalReview article

  3. 2018
  4. In vitro evolution of antibodies inspired by in vivo evolution

    Persson, H., Kirik, U., Thörnqvist, L., Greiff, L., Fredrik Levander & Mats Ohlin, 2018 Jun 21, In : Frontiers in Immunology. 9, JUN, 1391.

    Research output: Contribution to journalArticle

  5. Comparative membrane-associated proteomics of three different immune reactions in potato

    Burra, D. D., Lenman, M., Fredrik Levander, Resjö, S. & Andreasson, E., 2018 Feb 10, In : International Journal of Molecular Sciences. 19, 2, 538.

    Research output: Contribution to journalArticle

  6. Patient-derived xenograft models reveal intratumor heterogeneity and temporal stability in neuroblastoma

    Braekeveldt, N., Von Stedingk, K., Fransson, S., Martinez-Monleon, A., Lindgren, D., Axelson, H., Levander, F., Willforss, J., Hansson, K., Øra, I., Backman, T., Börjesson, A., Beckman, S., Esfandyari, J., Berbegall, A. P., Noguera, R., Karlsson, J., Koster, J., Martinsson, T., Gisselsson, D. & 2 others, Sven Påhlman & Daniel Bexell, 2018, In : Cancer Research. 78, 20, p. 5958-5969 12 p.

    Research output: Contribution to journalArticle

  7. 2017
  8. Antibody heavy chain variable domains of different germline gene origins diversify through different paths

    Kirik, U., Persson, H., Fredrik Levander, Greiff, L. & Mats Ohlin, 2017 Nov 13, In : Frontiers in Immunology. 8, NOV, 1433.

    Research output: Contribution to journalArticle

  9. Proteomic analysis of phytophthora infestans reveals the importance of cell wall proteins in pathogenicity

    Resjö, S., Brus, M., Ashfaq Ali, Meijer, H. J. G., Sandin, M., Govers, F., Fredrik Levander, Grenville-Briggs, L. J. & Andreasson, E., 2017 Nov 1, In : Molecular and Cellular Proteomics. 16, 11, p. 1958-1971 14 p.

    Research output: Contribution to journalArticle

  10. Data on haplotype-supported immunoglobulin germline gene inference

    Kirik, U., Greiff, L., Fredrik Levander & Mats Ohlin, 2017 Aug 1, In : Data in Brief. 13, p. 620-640 21 p.

    Research output: Contribution to journalArticle

  11. NLK-mediated phosphorylation of HDAC1 negatively regulates Wnt signaling

    Masoumi, K. C., Renée Daams, Wondossen Sime, Valentina Siino, Ke, H., Fredrik Levander & Ramin Massoumi, 2017 Jan 15, In : Molecular Biology of the Cell. 28, 2, p. 346-355 10 p.

    Research output: Contribution to journalArticle

  12. A community proposal to integrate proteomics activities in ELIXIR

    Vizcaíno, J. A., Walzer, M., Jiménez, R. C., Bittremieux, W., Bouyssié, D., Carapito, C., Corrales, F., Ferro, M., Heck, A. J. R., Horvatovich, P., Hubalek, M., Lane, L., Laukens, K., Levander, F., Lisacek, F., Novak, P., Palmblad, M., Piovesan, D., Pühler, A., Schwämmle, V. & 6 others, Valkenborg, D., van Rijswijk, M., Vondrasek, J., Eisenacher, M., Martens, L. & Kohlbacher, O., 2017, In : F1000Research. 6, 875.

    Research output: Contribution to journalArticle

  13. Antibody-encoding repertoires of bone marrow and peripheral blood-a focus on IgE

    Levin, M., Fredrik Levander, Palmason, R., Greiff, L. & Mats Ohlin, 2017, In : Journal of Allergy and Clinical Immunology. 139, 3, p. 1026-1030

    Research output: Contribution to journalLetter

  14. 2016
  15. Aberrant activation of the PI3K/mTOR pathway promotes resistance to sorafenib in AML

    O Lindblad, Cordero, E., Puissant, A., Macaulay, L., Ramos, A., Kabir, N. N., J Sun, J Vallon-Christersson, Haraldsson, K., Hemann, M. T., Åke Borg, F Levander, Stegmaier, K., K Pietras, L Rönnstrand & J U Kazi, 2016 Sep 29, In : Oncogene. 35, 39, p. 5119-5131 13 p.

    Research output: Contribution to journalArticle

  16. Dinosaur: A Refined Open-Source Peptide MS Feature Detector

    Teleman, J., Chawade, A., Sandin, M., Fredrik Levander & Johan Malmström, 2016 Jul 1, In : Journal of Proteome Research. 15, 7, p. 2143-2151 9 p.

    Research output: Contribution to journalArticle

  17. Targeted Proteomics Approach for Precision Plant Breeding

    Chawade, A., Alexandersson, E., Bengtsson, T., Andreasson, E. & Fredrik Levander, 2016 Feb 5, In : Journal of Proteome Research. 15, 2, p. 638-642 9 p.

    Research output: Contribution to journalArticle

  18. 2015
  19. BEX1 acts as a tumor suppressor in acute myeloid leukemia.

    Oscar Lindblad, Li, T., Su, X., Jianmin Sun, Kabir, N. N., Fredrik Levander, Zhao, H., Lu, G., Lars Rönnstrand & Julhash U. Kazi, 2015, In : Oncotarget. 6, 25, p. 21395-21405

    Research output: Contribution to journalArticle

  20. Comparative proteomic analysis of hyphae and germinating cysts of Phytophthora pisi and Phytophthora sojae.

    Hosseini, S., Resjö, S., Liu, Y., Durling, M., Heyman, F., Fredrik Levander, Liu, Y., Elfstrand, M., Funck Jensen, D., Andreasson, E. & Karlsson, M., 2015, In : Journal of Proteomics. 117, p. 24-40

    Research output: Contribution to journalArticle

  21. Data Processing Has Major Impact on the Outcome of Quantitative Label-Free LC-MS Analysis

    Chawade, A., Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2015, In : Journal of Proteome Research. 14, 2, p. 676-687

    Research output: Contribution to journalArticle

  22. DIANA - algorithmic improvements for analysis of data-independent acquisition MS data.

    Teleman, J., Röst, H., Rosenberger, G., Schmitt, U., Malmström, L., Johan Malmström & Fredrik Levander, 2015, In : Bioinformatics. 31, 4, p. 555-562

    Research output: Contribution to journalArticle

  23. Is label-free LC-MS/MS ready for biomarker discovery?

    Sandin, M., Chawade, A. & Fredrik Levander, 2015, In : Proteomics Clinical Applications. 9, 3-4, p. 289-294

    Research output: Contribution to journalDebate/Note/Editorial

  24. Representation of selected-reaction monitoring data in the mzQuantML data standard

    Qi, D., Lawless, C., Teleman, J., Fredrik Levander, Holman, S. W., Hubbard, S. & Jones, A. R., 2015, In : Proteomics. 15, 15, p. 2592-2596

    Research output: Contribution to journalArticle

  25. 2014
  26. Data processing methods and quality control strategies for label-free LC-MS protein quantification.

    Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2014, In : Biochimica et biophysica acta. 1844, 1, p. 29-41

    Research output: Contribution to journalReview article

  27. Framtidens mat – om husdjursavel och växtförädling

    Lehrman, A. (ed.), Lehrman, A., Chatzopoulou, S., Feng, L., Forabosco, F., Jonas, E., Karantininis, K., Fredrik Levander, Nicolia, A., Rydhmer, L., Röcklinsberg, H., Sandin, P., Sundström, J. & Zhu, L-H., 2014, SLU, Uppsala. 88 p.

    Research output: Book/ReportBook

  28. Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets

    Chawade, A., Alexandersson, E. & Fredrik Levander, 2014, In : Journal of Proteome Research. 13, 6, p. 3114-3120

    Research output: Contribution to journalArticle

  29. Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans

    Burra, D. D., Berkowitz, O., Hedley, P. E., Morris, J., Resjoe, S., Fredrik Levander, Liljeroth, E., Andreasson, E. & Alexandersson, E., 2014, In : BMC Plant Biology. 14, 254.

    Research output: Contribution to journalArticle

  30. Proteomics and transcriptomics of the BABA-induced resistance response in potato using a novel functional annotation approach

    Bengtsson, T., Weighill, D., Proux-Wera, E., Fredrik Levander, Resjo, S., Burra, D. D., Moushib, L., Hedley, P. E., Liljeroth, E., Jacobson, D., Alexandersson, E. & Andreasson, E., 2014, In : BMC Genomics. 15

    Research output: Contribution to journalArticle

  31. Quantitative Label-Free Phosphoproteomics of Six Different Life Stages of the Late Blight Pathogen Phytophthora infestans Reveals Abundant Phosphorylation of Members of the CRN Effector Family

    Resjo, S., Ali, A., Meijer, H. J. G., Seidl, M. F., Snel, B., Sandin, M., Fredrik Levander, Govers, F. & Andreasson, E., 2014, In : Journal of Proteome Research. 13, 4, p. 1848-1859

    Research output: Contribution to journalArticle

  32. Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions

    Ali, A., Alexandersson, E., Sandin, M., Resjo, S., Lenman, M., Hedley, P., Fredrik Levander & Andreasson, E., 2014, In : BMC Genomics. 15, 497.

    Research output: Contribution to journalArticle

  33. 2013
  34. An adaptive alignment algorithm for quality-controlled label-free LC-MS.

    Sandin, M., Ali, A., Hansson, K., Månsson, O., Andreasson, E., Resjö, S. & Fredrik Levander, 2013, In : Molecular & Cellular Proteomics. 12, 5, p. 1407-1420

    Research output: Contribution to journalArticle

  35. Automated quality control system for LC-SRM setups.

    Teleman, J., Waldemarson, S., Johan Malmström & Fredrik Levander, 2013, In : Journal of Proteomics. 95, Online 11 April 2013, p. 77-83

    Research output: Contribution to journalArticle

  36. Proteome of the nematode-trapping cells of the fungus Monacrosporium haptotylum.

    Andersson, K-M., Meerupati, T., Fredrik Levander, Friman, E., Dag Ahrén & Anders Tunlid, 2013, In : Applied and Environmental Microbiology. 79, 16, p. 4993-5004

    Research output: Contribution to journalArticle

  37. The HUPO proteomics standards initiative-mass spectrometry controlled vocabulary

    Mayer, G., Montecchi-Palazzi, L., Ovelleiro, D., Jones, A. R., Binz, P-A., Deutsch, E. W., Chambers, M., Kallhardt, M., Fredrik Levander, Shofstahl, J., Orchard, S., Vizcaino, J. A., Hermjakob, H., Stephan, C., Meyer, H. E. & Eisenacher, M., 2013, In : Database: the Journal of Biological Databases and Curation. p. bat009

    Research output: Contribution to journalArticle

  38. 2012
  39. Automated Selected Reaction Monitoring Software for Accurate Label-Free Protein Quantification.

    Teleman, J., Christofer Karlsson, Waldemarson, S., Hansson, K. M., Peter James, Johan Malmström & Fredrik Levander, 2012, In : Journal of Proteome Research. 11, 7, p. 3766-3773

    Research output: Contribution to journalArticle

  40. Critical Comparison of Multidimensional Separation Methods for Increasing Protein Expression Coverage

    Antberg, L., Cifani, P., Sandin, M., Fredrik Levander & Peter James, 2012, In : Journal of Proteome Research. 11, 5, p. 2644-2652

    Research output: Contribution to journalArticle

  41. Multimodel Pathway Enrichment Methods for Functional Evaluation of Expression Regulation.

    Kirik, U., Cifani, P., Albrekt, A-S., Malin Lindstedt, Anders Heyden & Fredrik Levander, 2012, In : Journal of Proteome Research. 11, 5, p. 2955-2967

    Research output: Contribution to journalArticle

  42. Relative Quantification of Membrane Proteins in Wild-Type and Prion Protein (PrP)-Knockout Cerebellar Granule Neurons

    Stella, R., Cifani, P., Peggion, C., Hansson, K. M., Lazzari, C., Bendz, M., Fredrik Levander, Sorgato, M. C., Bertoli, A. & Peter James, 2012, In : Journal of Proteome Research. 11, 2, p. 523-536

    Research output: Contribution to journalArticle

  43. TraML: a standard format for exchange of selected reaction monitoring transition lists

    Deutsch, E. W., Chambers, M., Neumann, S., Fredrik Levander, Binz, P-A., Shofstahl, J., Campbell, D. S., Mendoza, L., Ovelleiro, D., Helsens, K., Martens, L., Aebersold, R., Moritz, R. L. & Brusniak, M-Y., 2012, In : Molecular & Cellular Proteomics. 11, 4, p. R111.015040

    Research output: Contribution to journalArticle

  44. 2011
  45. Facing challenges in proteomics today and in the coming decade: report of roundtable discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010

    Cox, J., Heeren, R. M. A., Peter James, Jorrin-Novo, J. V., Kolker, E., Fredrik Levander, Morrice, N., Picotti, P., Righetti, P. G., Sánchez, J-C., Turck, C. W., Zubarev, R., Alexandre, B. M., Corrales, F. J. & György Marko-Varga, 2011, In : Journal of Proteomics. 75, 1, p. 4-17

    Research output: Contribution to journalLetter

  46. Generic workflow for quality assessment of quantitative label-free LC-MS analysis

    Sandin, M., Krogh, M., Hansson, K. M. & Fredrik Levander, 2011, In : Proteomics. 11, 6, p. 1114-1124

    Research output: Contribution to journalArticle

  47. Hunting for Protein Markers of Hypoxia by Combining Plasma Membrane Enrichment with a New Approach to Membrane Protein Analysis

    Cifani, P., Bendz, M., Wårell, K., Hansson, K. M., Fredrik Levander, Sandin, M., Krogh, M., Ovenberger, M., Fredlund, E., Marica Vaapil, Alexander Pietras, Sven Påhlman & Peter James, 2011, In : Journal of Proteome Research. 10, 4, p. 1645-1656

    Research output: Contribution to journalArticle

  48. Laboratory data and sample management for proteomics.

    Jari Häkkinen & Fredrik Levander, 2011, Data Mining in Proteomics : From Standards to Applications. Hamacher, M., Eisenacher, M. & Stephan, C. (eds.). Springer, Vol. 696. p. 79-92 (Methods in Molecular Biology; vol. 696).

    Research output: Chapter in Book/Report/Conference proceedingBook chapter

  49. mzML - a community standard for mass Spectrometry data

    Martens, L., Chambers, M., Sturm, M., Kessner, D., Fredrik Levander & Shofstahl, J., 2011, In : Molecular & Cellular Proteomics. 10, 1, p. R110.000133.1-R110.000133.2

    Research output: Contribution to journalArticle

  50. 2010
  51. Improved label-free LC-MS analysis by wavelet-based noise rejection

    Cappadona, S., Nanni, P., Benevento, M., Fredrik Levander, Versura, P., Roda, A., Cerutti, S. & Pattini, L., 2010, In : Journal of Biomedicine and Biotechnology. 2010

    Research output: Contribution to journalArticle

  52. 2009
  53. A label-free nano-liquid chromatography-mass spectrometry approach for quantitative serum peptidomics in Crohn's disease patients.

    Nanni, P., Fredrik Levander, Roda, G., Caponi, A., Peter James & Roda, A., 2009, In : Journal of Chromatography. B. 877, 27, p. 3127-3136

    Research output: Contribution to journalArticle

  54. Differential proteomic analysis of HT29 Cl.16E cells line and intestinal epithelial cells by LC ESI/QTOF mass spectrometry.

    Nanni, P., Mezzanottea, L., Roda, G., Caponi, A., Fredrik Levander, Peter James & Roda, A., 2009, In : Journal of Proteomics. 72, 5, p. 865-873

    Research output: Contribution to journalArticle

  55. Getting a grip on proteomics data - Proteomics Data Collection (ProDaC)

    Eisenacher, M., Martens, L., Hardt, T., Kohl, M., Barsnes, H., Helsens, K., Jari Häkkinen, Fredrik Levander, Aebersold, R. & al, E., 2009, In : Proteomics. 9, 15, p. 3928-3933

    Research output: Contribution to journalArticle

  56. Proteome analysis of the xylose-fermenting mutant yeast strain TMB 3400.

    Karhumaa, K., Påhlman, A-K., Bärbel Hahn-Hägerdal, Fredrik Levander & Marie-Francoise Gorwa-Grauslund, 2009, In : Yeast. 26, 7, p. 371-382

    Research output: Contribution to journalArticle

  57. Proteomic expression analysis and comparison of protein and mRNA expression profiles in human malignant gliomas

    Persson, O., Brynnel, U., Fredrik Levander, Widegren, B., Leif Salford & Krogh, M., 2009, In : Proteomics Clinical Applications. 3, p. 83-94

    Research output: Contribution to journalArticle

  58. Proteomics data collection--4th ProDaC workshop 15 August 2008, Amsterdam, The Netherlands

    Eisenacher, M., Kohl, M., Martens, L., Barsnes, H., Hardt, T., Fredrik Levander, Jari Häkkinen, Apweiler, R., Meyer, H. E. & Stephan, C., 2009, In : Proteomics. 9, 2, p. 218-222

    Research output: Contribution to journalArticle

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