Johan Malmström

Professor, PhD
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  1. 1998
  2. 2001
  3. 2002
  4. On-chip microextraction for proteomic sample preparation of in-gel digests

    Simon Ekström, Johan Malmström, Lars Wallman, Löfgren, M., Johan Nilsson, Thomas Laurell & György Marko-Varga, 2002 Apr, In : Proteomics. 2, 4, p. 413-421 9 p.

    Research output: Contribution to journalArticle

  5. ESI and MALDI LC/MS-MS approaches for large scale protein, identification and quantification: Are they equivalent?

    Juhasz, P., Falick, A., Graber, A., Hattan, S., Khainovski, N., Marchese, J., Martin, S., Patterson, D., Williamson, B., J. Malmstrom, G. Westergren-Thorsson & G. Marko-Varga, 2002 Dec 1, p. 55-56. 2 p.

    Research output: Contribution to conferencePaper, not in proceeding

  6. 2003
  7. Functional Proteome analysis of the molecular mechanism of (myo)fibroblast differentiation

    Johan Malmström, 2003, Johan Malmström, BMC C13, 221 84 Lund,. 209 p.

    Research output: ThesisDoctoral Thesis (compilation)

  8. Targeting hepatocytes from liver tissue by laser capture microdissection and proteomics expression profiling.

    György Marko-Varga, Berglund, M., Johan Malmström, Lindberg, H. & Fehniger, T. E., 2003, In : Electrophoresis. 24, 21, p. 3800-3805

    Research output: Contribution to journalArticle

  9. 2004
  10. Exploring the context of the lung proteome within the airway mucosa following allergen challenge.

    Fehniger, T. E., Sato-Folatre, J-G., Johan Malmström, Berglund, M., Lindberg, C., Brange, C., Lindberg, H. & Marko-Varga, G., 2004, In : Journal of Proteome Research. 3, 2, p. 307-320

    Research output: Contribution to journalReview article

  11. Proteome annotations and identifications of the human pulmonary fibroblast.

    Johan Malmström, Larsen, K., Lars Malmström, Ellen Tufvesson, Parker, K., Marchese, J., Williamson, B., Hattan, S., Patterson, D., Martin, S., Graber, A., Juhasz, H. P., Gunilla Westergren-Thorsson & György Marko-Varga, 2004, In : Journal of Proteome Research. 3, 3, p. 525-537

    Research output: Contribution to journalArticle

  12. Transforming growth factor-beta 1 specifically induce proteins involved in the myofibroblast contractile apparatus

    Johan Malmström, Henrik Lindberg, Lindberg, C., Charlotte Bratt, Elisabet Wieslander, Delander, E-L., Särnstrand, B., Burns, J. S., Mose-Larsen, P., Fey, S. & György Marko-Varga, 2004 May, In : Molecular & Cellular Proteomics. 3, 5, p. 466-477 12 p.

    Research output: Contribution to journalArticle

  13. 2005
  14. Proteomics: A new research area for the biomedical field

    Johan Malmström, Lars Malmström & György Marko-Varga, 2005 Jan 1, In : Journal of Organ Dysfunction. 1, 1, p. 83-94 12 p.

    Research output: Contribution to journalArticle

  15. Chapter 14 Proteomics and remodeling of extracellular matrix in lung diseases

    Johan Malmström, 2005 Dec 1, Proteomics and Peptidomics: New Technology Platforms Elucidating Biology. Marko-Varga, V. (ed.). p. 535-556 22 p. (Comprehensive Analytical Chemistry; vol. 46).

    Research output: Chapter in Book/Report/Conference proceedingBook chapter

  16. 2006
  17. Biosynthesis of dermatan sulfate: Chondroitin glucuronate C5-epimerase is identical to SART2.

    Marco Maccarana, Olander, B., Johan Malmström, Tiedemann, K., Aebersold, R., Lindahl, U., Li, J-P. & Anders Malmström, 2006, In : Journal of Biological Chemistry. 281, 17, p. 11560-11568

    Research output: Contribution to journalArticle

  18. Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis

    Johan Malmström, Lee, H., Nesvizhskii, A. I., Shteynberg, D., Mohanty, S., Brunner, E., Ye, M., Weber, G., Eckerskorn, C. & Aebersold, R., 2006 Sep, In : Journal of Proteome Research. 5, 9, p. 2241-9 9 p.

    Research output: Contribution to journalArticle

  19. 2007
  20. PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

    Bodenmiller, B., Johan Malmström, Gerrits, B., Campbell, D., Lam, H., Schmidt, A., Rinner, O., Mueller, L. N., Shannon, P. T., Pedrioli, P. G. A., Panse, C., Lee, H-K., Schlapbach, R. & Aebersold, R., 2007, In : Molecular Systems Biology. 3, 139.

    Research output: Contribution to journalArticle

  21. A high-quality catalog of the Drosophila melanogaster proteome

    Brunner, E., Ahrens, C. H., Mohanty, S., Baetschmann, H., Loevenich, S., Potthast, F., Deutsch, E. W., Panse, C., de Lichtenberg, U., Rinner, O., Lee, H., Pedrioli, P. G. A., Malmstrom, J., Koehler, K., Schrimpf, S., Krijgsveld, J., Kregenow, F., Heck, A. J. R., Hafen, E., Schlapbach, R. & 1 othersAebersold, R., 2007 May, In : Nature Biotechnology. 25, 5, p. 576-83 8 p.

    Research output: Contribution to journalArticle

  22. Advances in proteomic workflows for systems biology

    Johan Malmström, Lee, H. & Aebersold, R., 2007 Aug, In : Current Opinion in Biotechnology. 18, 4, p. 378-84 7 p.

    Research output: Contribution to journalArticle

  23. Simian Virus 40 depends on ER protein folding and quality control factors for entry into host cells

    Schelhaas, M., Johan Malmström, Pelkmans, L., Haugstetter, J., Ellgaard, L., Grünewald, K. & Helenius, A., 2007 Nov 2, In : Cell. 131, 3, p. 516-29 14 p.

    Research output: Contribution to journalArticle

  24. Two-dimensional separation of human plasma proteins using iterative free-flow electrophoresis

    Nissum, M., Kuhfuss, S., Hauptmann, M., Obermaier, C., Sukop, U., Wildgruber, R., Weber, G., Eckerskorn, C. & Johan Malmström, 2007 Dec, In : Proteomics. 7, 23, p. 4218-27 10 p.

    Research output: Contribution to journalArticle

  25. 2008
  26. Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring

    Lange, V., Johan A. Malmstroem, Didion, J., King, N. L., Johansson, B., Schaefer, J., Rameseder, J., Wong, C-H., Deutsch, E. W., Brusniak, M-Y., Buehlmann, P., Lars Björck, Domon, B. & Aebersold, R., 2008, In : Molecular & Cellular Proteomics. 7, 8, p. 1489-1500

    Research output: Contribution to journalArticle

  27. Rtt101 and Mms1 in budding yeast form a CUL4(DDB1)-like ubiquitin ligase that promotes replication through damaged DNA

    Zaidi, I. W., Rabut, G., Poveda, A., Scheel, H., Johan Malmström, Ulrich, H., Hofmann, K., Pasero, P., Peter, M. & Luke, B., 2008 Oct, In : EMBO Reports. 9, 10, p. 1034-40 7 p.

    Research output: Contribution to journalArticle

  28. 2009
  29. Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

    Schrimpf, S. P., Weiss, M., Reiter, L., Ahrens, C. H., Jovanovic, M., Johan Malmström, Brunner, E., Mohanty, S., Lercher, M. J., Hunziker, P. E., Aebersold, R., von Mering, C. & Hengartner, M. O., 2009 Mar 3, In : PLoS Biology. 7, 3, e48.

    Research output: Contribution to journalArticle

  30. Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

    Johan Malmström, Beck, M., Schmidt, A., Lange, V., Deutsch, E. W. & Aebersold, R., 2009 Aug 6, In : Nature. 460, 7256, p. 762-5 4 p.

    Research output: Contribution to journalLetter

  31. Visual proteomics of the human pathogen Leptospira interrogans

    Beck, M., Johan A Malmström, Lange, V., Schmidt, A., Deutsch, E. W. & Aebersold, R., 2009 Nov, In : Nature Methods. 6, 11, p. 817-23 7 p.

    Research output: Contribution to journalArticle

  32. Perspectives of targeted mass spectrometry for protein biomarker verification

    Hüttenhain, R., Johan Malmström, Picotti, P. & Aebersold, R., 2009 Dec, In : Current Opinion in Chemical Biology. 13, 5-6, p. 518-25 8 p.

    Research output: Contribution to journalArticle

  33. 2011
  34. Quantitative proteomics of microbes: Principles and applications to virulence

    Malmstroem, L., Johan Malmström & Aebersold, R., 2011, In : Proteomics. 11, 15, p. 2947-2956

    Research output: Contribution to journalReview article

  35. The quantitative proteome of a human cell line

    Beck, M., Schmidt, A., Johan Malmström, Claassen, M., Ori, A., Szymborska, A., Herzog, F., Rinner, O., Ellenberg, J. & Aebersold, R., 2011, In : Molecular Systems Biology. 7

    Research output: Contribution to journalArticle

  36. Absolute quantification of microbial proteomes at different states by directed mass spectrometry

    Schmidt, A., Beck, M., Johan Malmström, Lam, H., Claassen, M., Campbell, D. & Aebersold, R., 2011 Jul 19, In : Molecular Systems Biology. 7, p. 510

    Research output: Contribution to journalArticle

  37. A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas

    Farrah, T., Deutsch, E. W., Omenn, G. S., Campbell, D. S., Sun, Z., Bletz, J. A., Mallick, P., Katz, J. E., Johan Malmström, Ossola, R., Watts, J. D., Lin, B., Zhang, H., Moritz, R. L. & Aebersold, R., 2011 Sep, In : Molecular & Cellular Proteomics. 10, 9, p. M110.006353

    Research output: Contribution to journalArticle

  38. 2012
  39. Antibody orientation at bacterial surfaces is related to invasive infection.

    Pontus Nordenfelt, Waldemarson, S., Adam Linder, Mörgelin, M., Christofer Karlsson, Johan Malmström & Lars Björck, 2012, In : Journal of Experimental Medicine. 209, 13, p. 2367-2381

    Research output: Contribution to journalArticle

  40. Automated Selected Reaction Monitoring Software for Accurate Label-Free Protein Quantification.

    Teleman, J., Christofer Karlsson, Waldemarson, S., Hansson, K. M., Peter James, Johan Malmström & Fredrik Levander, 2012, In : Journal of Proteome Research. 11, 7, p. 3766-3773

    Research output: Contribution to journalArticle

  41. Automated Workflow for Large-Scale Selected Reaction Monitoring Experiments

    Malmstrom, L., Johan Malmström, Selevsek, N., Rosenberger, G. & Aebersold, R., 2012, In : Journal of Proteome Research. 11, 3, p. 1644-1653

    Research output: Contribution to journalArticle

  42. Protein Expression Changes in Ovarian Cancer during the Transition from Benign to Malignant.

    Waldemarson, S., Krogh, M., Alaiya, A., Kirik, U., Schedvins, K., Auer, G., Hansson, K. M., Ossola, R., Aebersold, R., Lee, H., Johan Malmström & Peter James, 2012, In : Journal of Proteome Research. 11, 5, p. 2876-2889

    Research output: Contribution to journalArticle

  43. Streptococcus pyogenes in human plasma: adaptive mechanisms analyzed by mass spectrometry based proteomics.

    Johan Malmström, Christofer Karlsson, Pontus Nordenfelt, Ossola, R., Weisser, H., Quandt, A., Hansson, K., Aebersold, R., Malmstrom, L. & Lars Björck, 2012, In : Journal of Biological Chemistry. 287, 2, p. 1415-1425

    Research output: Contribution to journalArticle

  44. 2013
  45. A Novel Role for Pro-Coagulant Microvesicles in the Early Host Defense against Streptococcus pyogenes

    Oehmcke, S., Westman, J., Johan Malmström, Mörgelin, M., Olin, A., Kreikemeyer, B. & Heiko Herwald, 2013, In : PLoS Pathogens. 9, 8, e1003529.

    Research output: Contribution to journalArticle

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