Johan Malmström

Professor, PhD
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  1. OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.

    Röst, H. L., Rosenberger, G., Navarro, P., Gillet, L., Miladinović, S. M., Schubert, O. T., Wolski, W., Collins, B. C., Johan Malmström, Malmström, L. & Aebersold, R., 2014, In : Nature Biotechnology. 32, 3, p. 219-223

    Research output: Contribution to journalArticle

  2. Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis

    Johan Malmström, Lee, H., Nesvizhskii, A. I., Shteynberg, D., Mohanty, S., Brunner, E., Ye, M., Weber, G., Eckerskorn, C. & Aebersold, R., 2006 Sep, In : Journal of Proteome Research. 5, 9, p. 2241-9 9 p.

    Research output: Contribution to journalArticle

  3. Perspectives of targeted mass spectrometry for protein biomarker verification

    Hüttenhain, R., Johan Malmström, Picotti, P. & Aebersold, R., 2009 Dec, In : Current Opinion in Chemical Biology. 13, 5-6, p. 518-25 8 p.

    Research output: Contribution to journalArticle

  4. PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

    Bodenmiller, B., Johan Malmström, Gerrits, B., Campbell, D., Lam, H., Schmidt, A., Rinner, O., Mueller, L. N., Shannon, P. T., Pedrioli, P. G. A., Panse, C., Lee, H-K., Schlapbach, R. & Aebersold, R., 2007, In : Molecular Systems Biology. 3, 139.

    Research output: Contribution to journalArticle

  5. Protein Expression Changes in Ovarian Cancer during the Transition from Benign to Malignant.

    Sofia Waldemarson, Krogh, M., Alaiya, A., Kirik, U., Schedvins, K., Auer, G., Hansson, K. M., Ossola, R., Aebersold, R., Lee, H., Johan Malmström & Peter James, 2012, In : Journal of Proteome Research. 11, 5, p. 2876-2889

    Research output: Contribution to journalArticle

  6. Proteome annotations and identifications of the human pulmonary fibroblast.

    Johan Malmström, Larsen, K., Lars Malmström, Ellen Tufvesson, Parker, K., Marchese, J., Williamson, B., Hattan, S., Patterson, D., Martin, S., Graber, A., Juhasz, H. P., Gunilla Westergren-Thorsson & György Marko-Varga, 2004, In : Journal of Proteome Research. 3, 3, p. 525-537

    Research output: Contribution to journalArticle

  7. Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

    Johan Malmström, Beck, M., Schmidt, A., Lange, V., Deutsch, E. W. & Aebersold, R., 2009 Aug 6, In : Nature. 460, 7256, p. 762-5 4 p.

    Research output: Contribution to journalLetter

  8. Proteomics: A new research area for the biomedical field

    Johan Malmström, Lars Malmström & György Marko-Varga, 2005 Jan 1, In : Journal of Organ Dysfunction. 1, 1, p. 83-94 12 p.

    Research output: Contribution to journalArticle

  9. Quantitative proteogenomics of human pathogens using DIA-MS.

    Malmström, L., Anahita Bakochi, Svensson Birkedal, G., Kilsgård, O., Lantz, H., Petersson, A. C., Hauri, S., Christofer Karlsson & Johan Malmström, 2015, In : Journal of Proteomics. 129, p. 98-107

    Research output: Contribution to journalArticle

  10. Quantitative proteomics of microbes: Principles and applications to virulence

    Malmstroem, L., Johan Malmström & Aebersold, R., 2011, In : Proteomics. 11, 15, p. 2947-2956

    Research output: Contribution to journalReview article

  11. Rapid determination of quaternary protein structures in complex biological samples

    Hauri, S., Khakzad, H., Lotta Happonen, Teleman, J., Johan Malmström & Lars Malmström, 2019 Jan 14, In : Nature Communications. 10, 192.

    Research output: Contribution to journalArticle

  12. Rtt101 and Mms1 in budding yeast form a CUL4(DDB1)-like ubiquitin ligase that promotes replication through damaged DNA

    Zaidi, I. W., Rabut, G., Poveda, A., Scheel, H., Johan Malmström, Ulrich, H., Hofmann, K., Pasero, P., Peter, M. & Luke, B., 2008 Oct, In : EMBO Reports. 9, 10, p. 1034-40 7 p.

    Research output: Contribution to journalArticle

  13. Simian Virus 40 depends on ER protein folding and quality control factors for entry into host cells

    Schelhaas, M., Johan Malmström, Pelkmans, L., Haugstetter, J., Ellgaard, L., Grünewald, K. & Helenius, A., 2007 Nov 2, In : Cell. 131, 3, p. 516-29 14 p.

    Research output: Contribution to journalArticle

  14. Streptococcus pyogenes in human plasma: adaptive mechanisms analyzed by mass spectrometry based proteomics.

    Johan Malmström, Christofer Karlsson, Pontus Nordenfelt, Ossola, R., Weisser, H., Quandt, A., Hansson, K., Aebersold, R., Malmstrom, L. & Lars Björck, 2012, In : Journal of Biological Chemistry. 287, 2, p. 1415-1425

    Research output: Contribution to journalArticle

  15. Structure and Interactions of a Dimeric Variant of sHIP, a Novel Virulence Determinant of Streptococcus pyogenes.

    Diehl, C., Wisniewska, M., Inga-Maria Frick, Streicher, W., Lars Björck, Johan Malmström & Wikström, M., 2016, In : Frontiers in Microbiology. 7, 95.

    Research output: Contribution to journalArticle

  16. Targeted mass spectrometry analysis of neutrophil-derived proteins released during sepsis progression.

    Erik Malmström, Davidova, A., Mörgelin, M., Adam Linder, Larsen, M., Qvortrup, K., Pontus Nordenfelt, Oonagh Shannon, Dzupova, O., Holub, M., Johan Malmström & Heiko Herwald, 2014, In : Thrombosis and Haemostasis. 112, 6, p. 1230-1243

    Research output: Contribution to journalArticle

  17. Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring

    Lange, V., Johan A. Malmstroem, Didion, J., King, N. L., Johansson, B., Schaefer, J., Rameseder, J., Wong, C-H., Deutsch, E. W., Brusniak, M-Y., Buehlmann, P., Lars Björck, Domon, B. & Aebersold, R., 2008, In : Molecular & Cellular Proteomics. 7, 8, p. 1489-1500

    Research output: Contribution to journalArticle

  18. Targeting hepatocytes from liver tissue by laser capture microdissection and proteomics expression profiling.

    György Marko-Varga, Berglund, M., Johan Malmström, Lindberg, H. & Fehniger, T. E., 2003, In : Electrophoresis. 24, 21, p. 3800-3805

    Research output: Contribution to journalArticle

  19. The Human Salivary Antimicrobial Peptide Profile according to the Oral Microbiota in Health, Periodontitis and Smoking

    Grant, M., Kilsgård, O., Åkerman, S., Klinge, B., Demmer, R. T., Johan Malmström & Jönsson, D., 2018 Nov 28, In : Journal of Innate Immunity.

    Research output: Contribution to journalArticle

  20. The quantitative proteome of a human cell line

    Beck, M., Schmidt, A., Johan Malmström, Claassen, M., Ori, A., Szymborska, A., Herzog, F., Rinner, O., Ellenberg, J. & Aebersold, R., 2011, In : Molecular Systems Biology. 7

    Research output: Contribution to journalArticle

  21. The TLR2 Antagonist Staphylococcal Superantigen-Like Protein 3 Acts as a Virulence Factor to Promote Bacterial Pathogenicity in vivo

    Koymans, K. J., Goldmann, O., Christofer A Q Karlsson, Sital, W., Thänert, R., Bisschop, A., Vrieling, M., Johan Malmström, Kessel, K. P. M., de Haas, C. J. C., van Strijp, J. A. G. & Medina, E., 2017, In : Journal of Innate Immunity. 9, p. 561-573

    Research output: Contribution to journalArticle

  22. Transforming growth factor-beta 1 specifically induce proteins involved in the myofibroblast contractile apparatus

    Johan Malmström, Henrik Lindberg, Lindberg, C., Charlotte Bratt, Elisabet Wieslander, Delander, E-L., Särnstrand, B., Burns, J. S., Mose-Larsen, P., Fey, S. & György Marko-Varga, 2004 May, In : Molecular & Cellular Proteomics. 3, 5, p. 466-477 12 p.

    Research output: Contribution to journalArticle

  23. Two-dimensional separation of human plasma proteins using iterative free-flow electrophoresis

    Nissum, M., Kuhfuss, S., Hauptmann, M., Obermaier, C., Sukop, U., Wildgruber, R., Weber, G., Eckerskorn, C. & Johan Malmström, 2007 Dec, In : Proteomics. 7, 23, p. 4218-27 10 p.

    Research output: Contribution to journalArticle

  24. Visual proteomics of the human pathogen Leptospira interrogans

    Beck, M., Johan A Malmström, Lange, V., Schmidt, A., Deutsch, E. W. & Aebersold, R., 2009 Nov, In : Nature Methods. 6, 11, p. 817-23 7 p.

    Research output: Contribution to journalArticle

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