Johan Malmström

Professor, PhD
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  1. Review article
  2. Development of large-scale cross-linking mass spectrometry

    Barysz, H. M. & Johan Malmstroem, 2018, In : Molecular and Cellular Proteomics. 17, 6, p. 1055-1066

    Research output: Contribution to journalReview article

  3. Data processing methods and quality control strategies for label-free LC-MS protein quantification.

    Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2014, In : Biochimica et biophysica acta. 1844, 1, p. 29-41

    Research output: Contribution to journalReview article

  4. Quantitative proteomics of microbes: Principles and applications to virulence

    Malmstroem, L., Johan Malmström & Aebersold, R., 2011, In : Proteomics. 11, 15, p. 2947-2956

    Research output: Contribution to journalReview article

  5. Exploring the context of the lung proteome within the airway mucosa following allergen challenge.

    Fehniger, T. E., Sato-Folatre, J-G., Johan Malmström, Berglund, M., Lindberg, C., Brange, C., Lindberg, H. & Marko-Varga, G., 2004, In : Journal of Proteome Research. 3, 2, p. 307-320

    Research output: Contribution to journalReview article

  6. Doctoral Thesis (compilation)
  7. Functional Proteome analysis of the molecular mechanism of (myo)fibroblast differentiation

    Johan Malmström, 2003, Johan Malmström, BMC C13, 221 84 Lund,. 209 p.

    Research output: ThesisDoctoral Thesis (compilation)

  8. Paper, not in proceeding
  9. ESI and MALDI LC/MS-MS approaches for large scale protein, identification and quantification: Are they equivalent?

    Juhasz, P., Falick, A., Graber, A., Hattan, S., Khainovski, N., Marchese, J., Martin, S., Patterson, D., Williamson, B., J. Malmstrom, G. Westergren-Thorsson & G. Marko-Varga, 2002 Dec 1, p. 55-56. 2 p.

    Research output: Contribution to conferencePaper, not in proceeding

  10. Book chapter
  11. Analysis of bacterial surface interactions with mass spectrometry-based proteomics

    Christofer Karlsson, Teleman, J. & Johan Malmström, 2017, Methods in Molecular Biology. Humana Press, Vol. 1535. p. 17-24 8 p. (Methods in Molecular Biology; vol. 1535).

    Research output: Chapter in Book/Report/Conference proceedingBook chapter

  12. Chapter 14 Proteomics and remodeling of extracellular matrix in lung diseases

    Johan Malmström, 2005 Dec 1, Proteomics and Peptidomics: New Technology Platforms Elucidating Biology. Marko-Varga, V. (ed.). p. 535-556 22 p. (Comprehensive Analytical Chemistry; vol. 46).

    Research output: Chapter in Book/Report/Conference proceedingBook chapter

  13. Letter
  14. Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

    Johan Malmström, Beck, M., Schmidt, A., Lange, V., Deutsch, E. W. & Aebersold, R., 2009 Aug 6, In : Nature. 460, 7256, p. 762-5 4 p.

    Research output: Contribution to journalLetter

  15. Article
  16. A quantitative Streptococcus pyogenes-human protein-protein interaction map reveals localization of opsonizing antibodies

    Lotta Happonen, Hauri, S., Svensson Birkedal, G., Christofer Karlsson, Therese de Neergaard, Khakzad, H., Pontus Nordenfelt, Wikström, M., Wisniewska, M., Lars Björck, Lars Malmström & Johan Malmström, 2019 Jun 21, In : Nature Communications. 10, 1, p. 2727

    Research output: Contribution to journalArticle

  17. Greedy de novo motif discovery to construct motif repositories for bacterial proteomes

    Khakzad, H., Johan Malmström & Lars Malmström, 2019 Apr 18, In : BMC Bioinformatics. 20, Suppl 4, 141.

    Research output: Contribution to journalArticle

  18. Rapid determination of quaternary protein structures in complex biological samples

    Hauri, S., Khakzad, H., Lotta Happonen, Teleman, J., Johan Malmström & Lars Malmström, 2019 Jan 14, In : Nature Communications. 10, 192.

    Research output: Contribution to journalArticle

  19. The Human Salivary Antimicrobial Peptide Profile according to the Oral Microbiota in Health, Periodontitis and Smoking

    Grant, M., Kilsgård, O., Åkerman, S., Klinge, B., Demmer, R. T., Johan Malmström & Jönsson, D., 2018 Nov 28, In : Journal of Innate Immunity.

    Research output: Contribution to journalArticle

  20. Comprehensive Proteomic Characterization of Ontogenic Changes in Hematopoietic Stem and Progenitor Cells

    Jassinskaja, M., Johansson, E., Trine Ahn Kristiansen, Hugo Åkerstrand, Sjöholm, K., Hauri, S., Johan Malmström, Joan Yuan & Jenny Hansson, 2017 Dec 12, In : Cell Reports. 21, 11, p. 3285-3297 13 p.

    Research output: Contribution to journalArticle

  21. Improvements in Mass Spectrometry Assay Library Generation for Targeted Proteomics

    Teleman, J., Hauri, S. & Johan Malmström, 2017 Jul 7, In : Journal of Proteome Research. 16, 7, p. 2384-2392 9 p.

    Research output: Contribution to journalArticle

  22. The TLR2 Antagonist Staphylococcal Superantigen-Like Protein 3 Acts as a Virulence Factor to Promote Bacterial Pathogenicity in vivo

    Koymans, K. J., Goldmann, O., Christofer A Q Karlsson, Sital, W., Thänert, R., Bisschop, A., Vrieling, M., Johan Malmström, Kessel, K. P. M., de Haas, C. J. C., van Strijp, J. A. G. & Medina, E., 2017, In : Journal of Innate Immunity. 9, p. 561-573

    Research output: Contribution to journalArticle

  23. Dinosaur: A Refined Open-Source Peptide MS Feature Detector

    Teleman, J., Chawade, A., Sandin, M., Fredrik Levander & Johan Malmström, 2016 Jul 1, In : Journal of Proteome Research. 15, 7, p. 2143-2151 9 p.

    Research output: Contribution to journalArticle

  24. Structure and Interactions of a Dimeric Variant of sHIP, a Novel Virulence Determinant of Streptococcus pyogenes.

    Diehl, C., Wisniewska, M., Inga-Maria Frick, Streicher, W., Lars Björck, Johan Malmström & Wikström, M., 2016, In : Frontiers in Microbiology. 7, 95.

    Research output: Contribution to journalArticle

  25. Cancer associated proteins in blood plasma: Determining normal variation

    Stenemo, M., Teleman, J., Martin Sjöström, Grubb, G., Erik Malmström, Johan Malmström & Emma Niméus, 2016, In : Proteomics. 16, 13, p. 1928-1937 10 p.

    Research output: Contribution to journalArticle

  26. Data Processing Has Major Impact on the Outcome of Quantitative Label-Free LC-MS Analysis

    Chawade, A., Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2015, In : Journal of Proteome Research. 14, 2, p. 676-687

    Research output: Contribution to journalArticle

  27. Quantitative proteogenomics of human pathogens using DIA-MS.

    Malmström, L., Anahita Bakochi, Svensson Birkedal, G., Kilsgård, O., Lantz, H., Petersson, A. C., Hauri, S., Christofer Karlsson & Johan Malmström, 2015, In : Journal of Proteomics. 129, p. 98-107

    Research output: Contribution to journalArticle

  28. DIANA - algorithmic improvements for analysis of data-independent acquisition MS data.

    Teleman, J., Röst, H., Rosenberger, G., Schmitt, U., Malmström, L., Johan Malmström & Fredrik Levander, 2015, In : Bioinformatics. 31, 4, p. 555-562

    Research output: Contribution to journalArticle

  29. A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery

    Martin Sjöström, Ossola, R., Breslin, T., Rinner, O., Malmstroem, L., Schmidt, A., Aebersold, R., Johan Malmström & Emma Niméus, 2015, In : Journal of Proteome Research. 14, 7, p. 2807-2818

    Research output: Contribution to journalArticle

  30. Development of Phage-Based Antibody Fragment Reagents for Affinity Enrichment of Bacterial Immunoglobulin G Binding Proteins.

    Säll, A., Sjöholm, K., Waldemarson, S., Lotta Happonen, Christofer Karlsson, Persson, H. & Johan Malmström, 2015, In : Journal of Proteome Research. 14, 11, p. 4704-4713

    Research output: Contribution to journalArticle

  31. Complete Removal of Extracellular IgG Antibodies in a Randomized Dose-Escalation Phase I Study with the Bacterial Enzyme IdeS - A Novel Therapeutic Opportunity.

    Winstedt, L., Järnum, S., Nordahl, E. A., Olsson, A., Runström, A., Bockermann, R., Christofer Karlsson, Johan Malmström, Samuelsson Palmgren, G., Malmqvist, U., Lars Björck & Kjellman, C., 2015, In : PLoS ONE. 10, 7, e0132011.

    Research output: Contribution to journalArticle

  32. Functional and Structural Properties of a Novel Protein and Virulence Factor (sHIP) in Streptococcus pyogenes.

    Wisniewska, M., Lotta Happonen, Fredrik Kahn, Varjosalo, M., Malmström, L., Rosenberger, G., Christofer Karlsson, Cazzamali, G., Pozdnyakova, I., Inga-Maria Frick, Lars Björck, Streicher, W., Johan Malmström & Wikström, M., 2014, In : Journal of Biological Chemistry. 289, 26, p. 18175-18188

    Research output: Contribution to journalArticle

  33. Numerical compression schemes for proteomics mass spectrometry data.

    Teleman, J., Dowsey, A. W., Gonzalez-Galarza, F. F., Perkins, S., Pratt, B., Rost, H., Malmstrom, L., Johan Malmström, Jones, A. R., Deutsch, E. W. & Levander, F., 2014, In : Molecular & Cellular Proteomics. 13, 6, p. 1537-1542

    Research output: Contribution to journalArticle

  34. OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.

    Röst, H. L., Rosenberger, G., Navarro, P., Gillet, L., Miladinović, S. M., Schubert, O. T., Wolski, W., Collins, B. C., Johan Malmström, Malmström, L. & Aebersold, R., 2014, In : Nature Biotechnology. 32, 3, p. 219-223

    Research output: Contribution to journalArticle

  35. Targeted mass spectrometry analysis of neutrophil-derived proteins released during sepsis progression.

    Erik Malmström, Davidova, A., Mörgelin, M., Adam Linder, Larsen, M., Qvortrup, K., Pontus Nordenfelt, Oonagh Shannon, Dzupova, O., Holub, M., Johan Malmström & Heiko Herwald, 2014, In : Thrombosis and Haemostasis. 112, 6, p. 1230-1243

    Research output: Contribution to journalArticle

  36. A Novel Role for Pro-Coagulant Microvesicles in the Early Host Defense against Streptococcus pyogenes

    Oehmcke, S., Westman, J., Johan Malmström, Mörgelin, M., Olin, A., Kreikemeyer, B. & Heiko Herwald, 2013, In : PLoS Pathogens. 9, 8, e1003529.

    Research output: Contribution to journalArticle

  37. Automated quality control system for LC-SRM setups.

    Teleman, J., Sofia Waldemarson, Johan Malmström & Fredrik Levander, 2013, In : Journal of Proteomics. 95, Online 11 April 2013, p. 77-83

    Research output: Contribution to journalArticle

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