Johan Malmström

Professor, PhD
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  1. 2019
  2. A quantitative Streptococcus pyogenes-human protein-protein interaction map reveals localization of opsonizing antibodies

    Lotta Happonen, Hauri, S., Svensson Birkedal, G., Christofer Karlsson, Therese de Neergaard, Khakzad, H., Pontus Nordenfelt, Wikström, M., Wisniewska, M., Lars Björck, Lars Malmström & Johan Malmström, 2019 Jun 21, In : Nature Communications. 10, 1, p. 2727

    Research output: Contribution to journalArticle

  3. Greedy de novo motif discovery to construct motif repositories for bacterial proteomes

    Khakzad, H., Johan Malmström & Lars Malmström, 2019 Apr 18, In : BMC Bioinformatics. 20, Suppl 4, 141.

    Research output: Contribution to journalArticle

  4. Rapid determination of quaternary protein structures in complex biological samples

    Hauri, S., Khakzad, H., Lotta Happonen, Teleman, J., Johan Malmström & Lars Malmström, 2019 Jan 14, In : Nature Communications. 10, 192.

    Research output: Contribution to journalArticle

  5. The Human Salivary Antimicrobial Peptide Profile according to the Oral Microbiota in Health, Periodontitis and Smoking

    Grant, M., Kilsgård, O., Åkerman, S., Klinge, B., Demmer, R. T., Johan Malmström & Jönsson, D., 2019, In : Journal of Innate Immunity. 11, 5, p. 432-444

    Research output: Contribution to journalArticle

  6. 2018
  7. Development of large-scale cross-linking mass spectrometry

    Barysz, H. M. & Johan Malmstroem, 2018, In : Molecular and Cellular Proteomics. 17, 6, p. 1055-1066

    Research output: Contribution to journalReview article

  8. 2017
  9. Comprehensive Proteomic Characterization of Ontogenic Changes in Hematopoietic Stem and Progenitor Cells

    Jassinskaja, M., Johansson, E., Trine Ahn Kristiansen, Hugo Åkerstrand, Sjöholm, K., Hauri, S., Johan Malmström, Joan Yuan & Jenny Hansson, 2017 Dec 12, In : Cell Reports. 21, 11, p. 3285-3297 13 p.

    Research output: Contribution to journalArticle

  10. Improvements in Mass Spectrometry Assay Library Generation for Targeted Proteomics

    Teleman, J., Hauri, S. & Johan Malmström, 2017 Jul 7, In : Journal of Proteome Research. 16, 7, p. 2384-2392 9 p.

    Research output: Contribution to journalArticle

  11. Analysis of bacterial surface interactions with mass spectrometry-based proteomics

    Christofer Karlsson, Teleman, J. & Johan Malmström, 2017, Methods in Molecular Biology. Humana Press, Vol. 1535. p. 17-24 8 p. (Methods in Molecular Biology; vol. 1535).

    Research output: Chapter in Book/Report/Conference proceedingBook chapter

  12. The TLR2 Antagonist Staphylococcal Superantigen-Like Protein 3 Acts as a Virulence Factor to Promote Bacterial Pathogenicity in vivo

    Koymans, K. J., Goldmann, O., Christofer A Q Karlsson, Sital, W., Thänert, R., Bisschop, A., Vrieling, M., Johan Malmström, Kessel, K. P. M., de Haas, C. J. C., van Strijp, J. A. G. & Medina, E., 2017, In : Journal of Innate Immunity. 9, p. 561-573

    Research output: Contribution to journalArticle

  13. 2016
  14. Quantitative mass spectrometry to study inflammatory cartilage degradation and resulting interactions with the complement system

    Furst, C. M., Emma Åhrman, Bratteby, K., Waldemarson, S., Johan Malmström & Anna M. Blom, 2016 Oct 15, In : Journal of Immunology. 197, 8, p. 3415-3424 10 p.

    Research output: Contribution to journalArticle

  15. Dinosaur: A Refined Open-Source Peptide MS Feature Detector

    Teleman, J., Chawade, A., Sandin, M., Fredrik Levander & Johan Malmström, 2016 Jul 1, In : Journal of Proteome Research. 15, 7, p. 2143-2151 9 p.

    Research output: Contribution to journalArticle

  16. Cancer associated proteins in blood plasma: Determining normal variation

    Stenemo, M., Teleman, J., Martin Sjöström, Grubb, G., Erik Malmström, Johan Malmström & Emma Niméus, 2016, In : Proteomics. 16, 13, p. 1928-1937 10 p.

    Research output: Contribution to journalArticle

  17. Structure and Interactions of a Dimeric Variant of sHIP, a Novel Virulence Determinant of Streptococcus pyogenes.

    Diehl, C., Wisniewska, M., Inga-Maria Frick, Streicher, W., Lars Björck, Johan Malmström & Wikström, M., 2016, In : Frontiers in Microbiology. 7, 95.

    Research output: Contribution to journalArticle

  18. 2015
  19. A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery

    Martin Sjöström, Ossola, R., Breslin, T., Rinner, O., Malmstroem, L., Schmidt, A., Aebersold, R., Johan Malmström & Emma Niméus, 2015, In : Journal of Proteome Research. 14, 7, p. 2807-2818

    Research output: Contribution to journalArticle

  20. Complete Removal of Extracellular IgG Antibodies in a Randomized Dose-Escalation Phase I Study with the Bacterial Enzyme IdeS - A Novel Therapeutic Opportunity.

    Winstedt, L., Järnum, S., Nordahl, E. A., Olsson, A., Runström, A., Bockermann, R., Christofer Karlsson, Johan Malmström, Samuelsson Palmgren, G., Malmqvist, U., Lars Björck & Kjellman, C., 2015, In : PLoS ONE. 10, 7, e0132011.

    Research output: Contribution to journalArticle

  21. Data Processing Has Major Impact on the Outcome of Quantitative Label-Free LC-MS Analysis

    Chawade, A., Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2015, In : Journal of Proteome Research. 14, 2, p. 676-687

    Research output: Contribution to journalArticle

  22. Development of Phage-Based Antibody Fragment Reagents for Affinity Enrichment of Bacterial Immunoglobulin G Binding Proteins.

    Säll, A., Sjöholm, K., Waldemarson, S., Lotta Happonen, Christofer Karlsson, Persson, H. & Johan Malmström, 2015, In : Journal of Proteome Research. 14, 11, p. 4704-4713

    Research output: Contribution to journalArticle

  23. DIANA - algorithmic improvements for analysis of data-independent acquisition MS data.

    Teleman, J., Röst, H., Rosenberger, G., Schmitt, U., Malmström, L., Johan Malmström & Fredrik Levander, 2015, In : Bioinformatics. 31, 4, p. 555-562

    Research output: Contribution to journalArticle

  24. Quantitative proteogenomics of human pathogens using DIA-MS.

    Malmström, L., Anahita Bakochi, Svensson Birkedal, G., Kilsgård, O., Lantz, H., Petersson, A. C., Hauri, S., Christofer Karlsson & Johan Malmström, 2015, In : Journal of Proteomics. 129, p. 98-107

    Research output: Contribution to journalArticle

  25. 2014
  26. Data processing methods and quality control strategies for label-free LC-MS protein quantification.

    Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2014, In : Biochimica et biophysica acta. 1844, 1, p. 29-41

    Research output: Contribution to journalReview article

  27. Functional and Structural Properties of a Novel Protein and Virulence Factor (sHIP) in Streptococcus pyogenes.

    Wisniewska, M., Lotta Happonen, Fredrik Kahn, Varjosalo, M., Malmström, L., Rosenberger, G., Christofer Karlsson, Cazzamali, G., Pozdnyakova, I., Inga-Maria Frick, Lars Björck, Streicher, W., Johan Malmström & Wikström, M., 2014, In : Journal of Biological Chemistry. 289, 26, p. 18175-18188

    Research output: Contribution to journalArticle

  28. Numerical compression schemes for proteomics mass spectrometry data.

    Teleman, J., Dowsey, A. W., Gonzalez-Galarza, F. F., Perkins, S., Pratt, B., Rost, H., Malmstrom, L., Johan Malmström, Jones, A. R., Deutsch, E. W. & Levander, F., 2014, In : Molecular & Cellular Proteomics. 13, 6, p. 1537-1542

    Research output: Contribution to journalArticle

  29. OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.

    Röst, H. L., Rosenberger, G., Navarro, P., Gillet, L., Miladinović, S. M., Schubert, O. T., Wolski, W., Collins, B. C., Johan Malmström, Malmström, L. & Aebersold, R., 2014, In : Nature Biotechnology. 32, 3, p. 219-223

    Research output: Contribution to journalArticle

  30. Targeted mass spectrometry analysis of neutrophil-derived proteins released during sepsis progression.

    Erik Malmström, Davidova, A., Mörgelin, M., Adam Linder, Larsen, M., Qvortrup, K., Pontus Nordenfelt, Oonagh Shannon, Dzupova, O., Holub, M., Johan Malmström & Heiko Herwald, 2014, In : Thrombosis and Haemostasis. 112, 6, p. 1230-1243

    Research output: Contribution to journalArticle

  31. 2013
  32. A Novel Role for Pro-Coagulant Microvesicles in the Early Host Defense against Streptococcus pyogenes

    Oehmcke, S., Westman, J., Johan Malmström, Mörgelin, M., Olin, A., Kreikemeyer, B. & Heiko Herwald, 2013, In : PLoS Pathogens. 9, 8, e1003529.

    Research output: Contribution to journalArticle

  33. Automated quality control system for LC-SRM setups.

    Teleman, J., Waldemarson, S., Johan Malmström & Fredrik Levander, 2013, In : Journal of Proteomics. 95, Online 11 April 2013, p. 77-83

    Research output: Contribution to journalArticle

  34. 2012
  35. Antibody orientation at bacterial surfaces is related to invasive infection.

    Pontus Nordenfelt, Waldemarson, S., Adam Linder, Mörgelin, M., Christofer Karlsson, Johan Malmström & Lars Björck, 2012, In : Journal of Experimental Medicine. 209, 13, p. 2367-2381

    Research output: Contribution to journalArticle

  36. Automated Selected Reaction Monitoring Software for Accurate Label-Free Protein Quantification.

    Teleman, J., Christofer Karlsson, Waldemarson, S., Hansson, K. M., Peter James, Johan Malmström & Fredrik Levander, 2012, In : Journal of Proteome Research. 11, 7, p. 3766-3773

    Research output: Contribution to journalArticle

  37. Automated Workflow for Large-Scale Selected Reaction Monitoring Experiments

    Malmstrom, L., Johan Malmström, Selevsek, N., Rosenberger, G. & Aebersold, R., 2012, In : Journal of Proteome Research. 11, 3, p. 1644-1653

    Research output: Contribution to journalArticle

  38. Protein Expression Changes in Ovarian Cancer during the Transition from Benign to Malignant.

    Waldemarson, S., Krogh, M., Alaiya, A., Kirik, U., Schedvins, K., Auer, G., Hansson, K. M., Ossola, R., Aebersold, R., Lee, H., Johan Malmström & Peter James, 2012, In : Journal of Proteome Research. 11, 5, p. 2876-2889

    Research output: Contribution to journalArticle

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