Tobias Ambjörnsson

Senior Lecturer, M.Sc.
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  1. 2001
  2. Nature of polarized excitons

    T. Ambjörnsson & Apell, S. P., 2001 Feb 22, In : The Journal of chemical physics. 114, 8, p. 3365-3372

    Research output: Contribution to journalArticle

  3. 2002
  4. Charged polymer membrane translocation

    T. Ambjörnsson, Apell, S. P., Konkoli, Z., Di Marzio, E. A. & Kasianowicz, J. J., 2002 Aug 22, In : The Journal of chemical physics. 117, 8, p. 4063-4073

    Research output: Contribution to journalArticle

  5. 2003
  6. Ellipsoidal particles driven by intensity gradients through viscous fluids

    T. Ambjörnsson & Apell, S. P., 2003, In : Physical Review E. 67, 3, 031917.

    Research output: Contribution to journalArticle

  7. Dipolar response of an ellipsoidal particle with an anisotropic coating

    T Ambjörnsson & Mukhopadhyay, G., 2003 Oct 24, In : Journal of Physics A: Mathematical and General. 36, 42, p. 10651-10665

    Research output: Contribution to journalArticle

  8. 2004
  9. Electromagnetic response of a dipole-coupled ellipsoidal bilayer

    T. Ambjörnsson, Apell, S. P. & Mukhopadhyay, G., 2004, In : Physical Review E. 69, 3, 031914.

    Research output: Contribution to journalArticle

  10. Chaperone-assisted translocation

    Tobias Ambjörnsson & Metzler, R., 2004 Jun 1, In : Physical Biology. 1, 2, p. 77-88

    Research output: Contribution to journalArticle

  11. 2005
  12. Optimal Target Search on a Fast-Folding Polymer Chain with Volume Exchange

    Lomholt, M. A., Tobias Ambjörnsson & Metzler, R., 2005, In : Physical Review Letters. 95, 26, 260603.

    Research output: Contribution to journalArticle

  13. Binding dynamics of single-stranded DNA binding proteins to fluctuating bubbles in breathing DNA

    Tobias Ambjörnsson & Metzler, R., 2005 May 25, In : Journal of Physics: Condensed Matter. 17, 20, p. S1841-S1869

    Research output: Contribution to journalArticle

  14. Sensing DNA–DNA as Nanosensor: A Perspective Towards Nanobiotechnology

    Metzler, R. & Tobias Ambjörnsson, 2005 Sep 1, In : Journal of Computational and Theoretical Nanoscience. 2, 3, p. 389-395

    Research output: Contribution to journalArticle

  15. Stochastic approach to DNA breathing dynamics

    Banik, S. K., T Ambjörnsson & Metzler, R., 2005 Sep 1, In : Europhysics Letters. 71, 5, p. 852-858

    Research output: Contribution to journalArticle

  16. Dynamic Approach to DNA Breathing

    Metzler, R. & Tobias Ambjörnsson, 2005 Dec 1, In : Journal of Biological Physics. 31, 3-4, p. 339-350

    Research output: Contribution to journalArticle

  17. Blinking statistics of a molecular beacon triggered by end-denaturation of DNA

    Tobias Ambjörnsson & Metzler, R., 2005 Dec 14, In : Journal of Physics: Condensed Matter. 17, 49, p. S4305-S4316

    Research output: Contribution to journalArticle

  18. 2006
  19. Resonant coupling between localized plasmons and anisotropic molecular coatings in ellipsoidal metal nanoparticles

    Tobias Ambjörnsson, Mukhopadhyay, G., Apell, S. P. & Käll, M., 2006, In : Physical Review B. 73, 8

    Research output: Contribution to journalArticle

  20. Sequence Sensitivity of Breathing Dynamics in Heteropolymer DNA

    Tobias Ambjörnsson, Banik, S. K., Krichevsky, O. & Metzler, R., 2006, In : Physical Review Letters. 97, 12

    Research output: Contribution to journalArticle

  21. 2007
  22. Applying a potential across a biomembrane: Electrostatic contribution to the bending rigidity and membrane instability

    Tobias Ambjörnsson, Lomholt, M. A. & Hansen, P. L., 2007, In : Physical Review E. 75, 5, 051916.

    Research output: Contribution to journalArticle

  23. Bubble coalescence in breathing DNA: Two vicious walkers in opposite potentials

    Novotny, T., Pedersen, J., T. Ambjörnsson, Hansen, M. S. & Metzler, R., 2007, In : Europhysics Letters. 77, 4, 48001.

    Research output: Contribution to journalArticle

  24. Master equation approach to DNA breathing in heteropolymer DNA

    Tobias Ambjörnsson, Banik, S. K., Lomholt, M. A. & Metzler, R., 2007, In : Physical Review E. 75, 2, 021908.

    Research output: Contribution to journalArticle

  25. Single DNA conformations and biological function

    Metzler, R., Tobias Ambjörnsson, Hanke, A., Zhang, Y. & Levene, S., 2007 Jan 1, In : Journal of Computational and Theoretical Nanoscience. 4, 1, p. 1-49 49 p.

    Research output: Contribution to journalReview article

  26. Breathing Dynamics in Heteropolymer DNA

    Tobias Ambjörnsson, Banik, S. K., Krichevsky, O. & Metzler, R., 2007 Apr 15, In : Biophysical Journal. 92, 8, p. 2674-2684

    Research output: Contribution to journalArticle

  27. 2008
  28. Single-File Diffusion in a Box

    Lizana, L. & T. Ambjörnsson, 2008, In : Physical Review Letters. 100, 20, 200601.

    Research output: Contribution to journalArticle

  29. Diffusion of two particles with a finite interaction potential in one dimension

    Tobias Ambjörnsson & Silbey, R. J., 2008 Oct 28, In : The Journal of chemical physics. 129, 16, p. 165103

    Research output: Contribution to journalArticle

  30. Single-file dynamics with different diffusion constants

    Tobias Ambjörnsson, Lizana, L., Lomholt, M. A. & Silbey, R. J., 2008 Nov 14, In : The Journal of chemical physics. 129, 18, 185106.

    Research output: Contribution to journalArticle

  31. 2009
  32. Bubble merging in breathing DNA as a vicious walker problem in opposite potentials.

    Pedersen, J., Hansen, M. S., Novotný, T., Tobias Ambjörnsson & Metzler, R., 2009, In : Journal of Chemical Physics. 130, 16, 164117.

    Research output: Contribution to journalArticle

  33. Single DNA denaturation and bubble dynamics

    Metzler, R., Tobias Ambjörnsson, Hanke, A. & Fogedby, H. C., 2009 Jan 21, In : Journal of Physics: Condensed Matter. 21, 3, 034111.

    Research output: Contribution to journalArticle

  34. 2010
  35. Foundation of fractional Langevin equation: Harmonization of a many-body problem

    Lizana, L., Tobias Ambjörnsson, Taloni, A., Barkai, E. & Lomholt, M. A., 2010, In : Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 81, 5

    Research output: Contribution to journalArticle

  36. Observing Plasmonic-Molecular Resonance Coupling on Single Gold Nanorods

    Ni, W., Tobias Ambjörnsson, Apell, S. P., Chen, H. & Wang, J., 2010, In : Nano Letters. 10, 1, p. 77-84

    Research output: Contribution to journalArticle

  37. 2011
  38. Dissimilar bouncy walkers

    Lomholt, M. A., Lizana, L. & Tobias Ambjörnsson, 2011, In : Journal of Chemical Physics. 134, 4, 045101.

    Research output: Contribution to journalArticle

  39. 2012
  40. 2013
  41. Microscopic Origin of the Logarithmic Time Evolution of Aging Processes in Complex Systems

    Lomholt, M. A., Lizana, L., Metzler, R. & Tobias Ambjörnsson, 2013, In : Physical Review Letters. 110, 20, 208301.

    Research output: Contribution to journalArticle

  42. Identifying bacteria using DNA binding maps

    Emilsson, G., Adam Nilsson, Nyberg, L. K., Noble, C., Svensson Stadler, L., Moore, E. R. B., Tobias Ambjörnsson, Jonas O. Tegenfeldt & Westerlund, F., 2013 Jan 1, 17th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2013. Chemical and Biological Microsystems Society, Vol. 1. p. 473-475 3 p.

    Research output: Chapter in Book/Report/Conference proceedingPaper in conference proceeding

  43. 2014
  44. Ageing single file motion

    Metzler, R., Sanders, L., Lomholt, M. A., Lizana, L., Fogelmark, K. & Tobias Ambjörnsson, 2014, In : The European Physical Journal. Special Topics. 223, 14, p. 3287-3293

    Research output: Contribution to journalArticle

  45. Competitive binding-based optical DNA mapping for fast identification of bacteria - multi-ligand transfer matrix theory and experimental applications on Escherichia coli.

    Adam Nilsson, Emilsson, G., Nyberg, L. K., Noble, C., Svensson Stadler, L., Fritzsche, J., Moore, E. R. B., Jonas Tegenfeldt, Tobias Ambjörnsson & Westerlund, F., 2014, In : Nucleic Acids Research. 42, 15, p. e118

    Research output: Contribution to journalArticle

  46. Nanoconfined circular DNA

    Alizadehheidari, M., Werner, E., Noble, C., Nyberg, L. K., Fritzsche, J., Persson, F., Mehlig, B., J. O. Tegenfeldt, T. Ambjörnsson & Westerlund, F., 2014, 18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014. Chemical and Biological Microsystems Society, p. 1353-1355 3 p.

    Research output: Chapter in Book/Report/Conference proceedingPaper in conference proceeding

  47. Non-Markovian effects in the first-passage dynamics of obstructed tracer particle diffusion in one-dimensional systems.

    Forsling, R., Sanders, L., Tobias Ambjörnsson & Lizana, L., 2014, In : Journal of Chemical Physics. 141, 9, 094902.

    Research output: Contribution to journalArticle

  48. Severe slowing-down and universality of the dynamics in disordered interacting many-body systems: ageing and ultraslow diffusion

    Sanders, L., Lomholt, M. A., Lizana, L., Fogelmark, K., Metzler, R. & Tobias Ambjörnsson, 2014, In : New Journal of Physics. 16, 113050.

    Research output: Contribution to journalArticle

  49. Single-file diffusion with non-thermal initial conditions

    Lizana, L., Lomholt, M. A. & Tobias Ambjörnsson, 2014, In : Physica A: Statistical Mechanics and its Applications. 395, p. 148-153

    Research output: Contribution to journalArticle

  50. 2015
  51. A fast and scalable kymograph alignment algorithm for nanochannel-based optical DNA mappings.

    Noble, C., Adam Nilsson, Freitag, C., Jason Beech, Jonas Tegenfeldt & Tobias Ambjörnsson, 2015, In : PLoS ONE. 10, 4, e0121905.

    Research output: Contribution to journalArticle

  52. Bacteriophage strain typing by rapid single molecule analysis.

    Grunwald, A., Dahan, M., Giesbertz, A., Adam Nilsson, Nyberg, L. K., Weinhold, E., Tobias Ambjörnsson, Westerlund, F. & Ebenstein, Y., 2015, In : Nucleic Acids Research. 43, 18, p. e117

    Research output: Contribution to journalArticle

  53. Extension of nanoconfined DNA: Quantitative comparison between experiment and theory

    Iarko, V., Werner, E., Nyberg, L. K., Muller, V., Fritzsche, J., Tobias Ambjörnsson, Jason Beech, Jonas Tegenfeldt, Mehlig, K., Westerlund, F. & Mehlig, B., 2015, In : Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 92, 6, 062701.

    Research output: Contribution to journalArticle

  54. Fast size-determination of intact bacterial plasmids using nanofluidic channels

    Frykholm, K., Nyberg, L. K., Lagerstedt, E., Noble, C., Fritzsche, J., Karami, N., Tobias Ambjörnsson, Sandegren, L. & Westerlund, F., 2015, In : Lab on a Chip. 15, 13, p. 2739-2743

    Research output: Contribution to journalArticle

  55. How nanochannel confinement affects the DNA melting transition within the Poland-Scheraga model.

    Reiter-Schad, M., Werner, E., Jonas Tegenfeldt, Mehlig, B. & Tobias Ambjörnsson, 2015, In : Journal of Chemical Physics. 143, 11, 115101.

    Research output: Contribution to journalArticle

  56. Many-body effects on tracer particle diffusion with applications for single-protein dynamics on DNA

    Ahlberg, S., Tobias Ambjörnsson & Lizana, L., 2015, In : New Journal of Physics. 17, 043036.

    Research output: Contribution to journalArticle

  57. Model for melting of confined DNA

    Werner, E., Reiter-Schad, M., Tobias Ambjörnsson & Mehlig, B., 2015, In : Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 91, 6, 060702.

    Research output: Contribution to journalArticle

  58. Nanoconfined Circular and Linear DNA: Equilibrium Conformations and Unfolding Kinetics

    Alizadehheidari, M., Werner, E., Noble, C., Reiter-Schad, M., Nyberg, L. K., Fritzsche, J., Mehlig, B., Jonas Tegenfeldt, Tobias Ambjörnsson, Persson, F. & Westerlund, F., 2015, In : Macromolecules. 48, 3, p. 871-878

    Research output: Contribution to journalArticle

  59. Visualizing the entire DNA from a chromosome in a single frame

    Freitag, C., Noble, C., Fritzsche, J., Persson, F., Reiter-Schad, M., Adam Nilsson, Graneli, A., Tobias Ambjörnsson, Mir, K. U. & Jonas Tegenfeldt, 2015, In : Biomicrofluidics. 9, 4, 044114.

    Research output: Contribution to journalArticle

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