Tobias Ambjörnsson

Senior Lecturer, M.Sc.
More filtering options
  1. 2019
  2. Enzyme-free optical DNA mapping of the human genome using competitive binding

    Müller, V., Albertas Dvirnas, Andersson, J., Singh, V., Kk, S., Johansson, P., Ebenstein, Y., Tobias Ambjörnsson & Westerlund, F., 2019 Sep 5, In : Nucleic Acids Research. 47, 15, e89.

    Research output: Contribution to journalArticle

  3. Optical DNA Mapping Combined with Cas9-Targeted Resistance Gene Identification for Rapid Tracking of Resistance Plasmids in a Neonatal Intensive Care Unit Outbreak

    Bikkarolla, S. K., Nordberg, V., Rajer, F., Müller, V., Kabir, M. H., Kk, S., Albertas Dvirnas, Tobias Ambjörnsson, Giske, C. G., Navér, L., Sandegren, L. & Westerlund, F., 2019 Jul 9, In : mBio. 10, 4, e00347-19.

    Research output: Contribution to journalArticle

  4. 2018
  5. Fitting a function to time-dependent ensemble averaged data

    Fogelmark, K., Lomholt, M. A., Anders Irbäck & Tobias Ambjörnsson, 2018 Dec 1, In : Scientific Reports. 8, 1, 6984.

    Research output: Contribution to journalArticle

  6. The resistomes of six carbapenem-resistant pathogens - a critical genotype-phenotype analysis

    Johnning, A., Karami, N., Tång Hallbäck, E., Müller, V., Nyberg, L., Buongermino Pereira, M., Stewart, C., Tobias Ambjörnsson, Westerlund, F., Adlerberth, I. & Kristiansson, E., 2018 Nov, In : Microbial Genomics. 4, 11

    Research output: Contribution to journalArticle

  7. Zero-crossing statistics for non-Markovian time series

    Nyberg, M., Lizana, L. & Tobias Ambjörnsson, 2018 Mar 14, In : Physical Review E. 97, 3, 032114.

    Research output: Contribution to journalArticle

  8. Facilitated sequence assembly using densely labeled optical DNA barcodes: A combinatorial auction approach

    Albertas Dvirnas, Christoffer Pichler, Stewart, C. L., Quaderi, S., Nyberg, L. K., Müller, V., Bikkarolla, S. K., Kristiansson, E., Sandegren, L., Westerlund, F. & Tobias Ambjörnsson, 2018 Mar 1, In : PLoS ONE. 13, 3, e0193900.

    Research output: Contribution to journalArticle

  9. Stochastic unfolding of nanoconfined DNA: Experiments, model and Bayesian analysis

    Jens Krog, Alizadehheidari, M., Werner, E., Bikkarolla, S. K., Jonas O. Tegenfeldt, Mehlig, B., Lomholt, M. A., Westerlund, F. & Tobias Ambjörnsson, 2018, In : Journal of Chemical Physics. 149, 21, 215101.

    Research output: Contribution to journalArticle

  10. 2017
  11. Tracer particle diffusion in a system with hardcore interacting particles

    Pigeon, S., Fogelmark, K., Bo Söderberg, Mukhopadhyay, G. & Tobias Ambjörnsson, 2017 Dec 21, In : Journal of Statistical Mechanics: Theory and Experiment. 2017, 12, 123209.

    Research output: Contribution to journalArticle

  12. Noise reduction in single time frame optical DNA maps

    Torche Pedreschi, P. C., Müller, V., Westerlund, F. & Tobias Ambjörnsson, 2017 Jun 1, In : PLoS ONE. 12, 6, e0179041.

    Research output: Contribution to journalArticle

  13. Tracer particles in two-dimensional elastic networks diffuse logarithmically slow

    Lizana, L., Tobias Ambjörnsson & Lomholt, M. A., 2017 Jan 20, In : Journal of Physics A: Mathematical and Theoretical. 50, 3, 034001.

    Research output: Contribution to journalArticle

  14. 2016
  15. Direct identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA mapping

    Müller, V., Rajer, F., Frykholm, K., Nyberg, L. K., Quaderi, S., Fritzsche, J., Kristiansson, E., Tobias Ambjörnsson, Sandegren, L. & Westerlund, F., 2016 Dec 1, In : Scientific Reports. 6, 37938.

    Research output: Contribution to journalArticle

  16. Super-Resolution Genome Mapping in Silicon Nanochannels

    Jeffet, J., Kobo, A., Su, T., Grunwald, A., Green, O., Adam Kinos, Eisenberg, E., Tobias Ambjörnsson, Westerlund, F., Weinhold, E., Shabat, D., Purohit, P. K. & Ebenstein, Y., 2016 Nov 22, In : ACS Nano. 10, 11, p. 9823-9830 8 p.

    Research output: Contribution to journalArticle

  17. Rapid identification of intact bacterial resistance plasmids via optical mapping of single DNA molecules

    Nyberg, L. K., Quaderi, S., Emilsson, G., Karami, N., Lagerstedt, E., Müller, V., Noble, C., Hammarberg, S., Adam N. Nilsson, Sjöberg, F., Fritzsche, J., Kristiansson, E., Sandegren, L., Tobias Ambjörnsson & Westerlund, F., 2016 Jul 27, In : Scientific Reports. 6, 30410.

    Research output: Contribution to journalArticle

  18. A simple method to calculate first-passage time densities with arbitrary initial conditions

    Nyberg, M., Tobias Ambjörnsson & Lizana, L., 2016 Jun 1, In : New Journal of Physics. 18, 6, 063019.

    Research output: Contribution to journalArticle

  19. Rapid tracing of resistance plasmids in a nosocomial outbreak using optical DNA mapping

    Müller, V., Karami, N., Nyberg, L. K., Christoffer Pichler, Torche Pedreschi, P. C., Quaderi, S., Fritzsche, J., Tobias Ambjörnsson, Åhrén, C. & Westerlund, F., 2016 May 13, In : ACS Infectious Diseases. 2, 5, p. 322-328 7 p.

    Research output: Contribution to journalArticle

  20. Detailed characterization of plasmids carrying resistance genes using optical DNA mapping

    Müller, V., Nyberg, L. K., Quaderi, S., Kristiansson, E., Tobias Ambjörnsson, Sandegren, L. & Westerlund, F., 2016, 20th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2016. Chemical and Biological Microsystems Society, p. 1561-1562 2 p.

    Research output: Chapter in Book/Report/Conference proceedingPaper in conference proceeding

  21. 2015
  22. A fast and scalable kymograph alignment algorithm for nanochannel-based optical DNA mappings.

    Noble, C., Adam Nilsson, Freitag, C., Jason Beech, Jonas Tegenfeldt & Tobias Ambjörnsson, 2015, In : PLoS ONE. 10, 4, e0121905.

    Research output: Contribution to journalArticle

  23. Bacteriophage strain typing by rapid single molecule analysis.

    Grunwald, A., Dahan, M., Giesbertz, A., Adam Nilsson, Nyberg, L. K., Weinhold, E., Tobias Ambjörnsson, Westerlund, F. & Ebenstein, Y., 2015, In : Nucleic Acids Research. 43, 18, p. e117

    Research output: Contribution to journalArticle

  24. Extension of nanoconfined DNA: Quantitative comparison between experiment and theory

    Iarko, V., Werner, E., Nyberg, L. K., Muller, V., Fritzsche, J., Tobias Ambjörnsson, Jason Beech, Jonas Tegenfeldt, Mehlig, K., Westerlund, F. & Mehlig, B., 2015, In : Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 92, 6, 062701.

    Research output: Contribution to journalArticle

  25. Fast size-determination of intact bacterial plasmids using nanofluidic channels

    Frykholm, K., Nyberg, L. K., Lagerstedt, E., Noble, C., Fritzsche, J., Karami, N., Tobias Ambjörnsson, Sandegren, L. & Westerlund, F., 2015, In : Lab on a Chip. 15, 13, p. 2739-2743

    Research output: Contribution to journalArticle

  26. How nanochannel confinement affects the DNA melting transition within the Poland-Scheraga model.

    Reiter-Schad, M., Werner, E., Jonas Tegenfeldt, Mehlig, B. & Tobias Ambjörnsson, 2015, In : Journal of Chemical Physics. 143, 11, 115101.

    Research output: Contribution to journalArticle

  27. Many-body effects on tracer particle diffusion with applications for single-protein dynamics on DNA

    Ahlberg, S., Tobias Ambjörnsson & Lizana, L., 2015, In : New Journal of Physics. 17, 043036.

    Research output: Contribution to journalArticle

  28. Model for melting of confined DNA

    Werner, E., Reiter-Schad, M., Tobias Ambjörnsson & Mehlig, B., 2015, In : Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 91, 6, 060702.

    Research output: Contribution to journalArticle

  29. Nanoconfined Circular and Linear DNA: Equilibrium Conformations and Unfolding Kinetics

    Alizadehheidari, M., Werner, E., Noble, C., Reiter-Schad, M., Nyberg, L. K., Fritzsche, J., Mehlig, B., Jonas Tegenfeldt, Tobias Ambjörnsson, Persson, F. & Westerlund, F., 2015, In : Macromolecules. 48, 3, p. 871-878

    Research output: Contribution to journalArticle

  30. Visualizing the entire DNA from a chromosome in a single frame

    Freitag, C., Noble, C., Fritzsche, J., Persson, F., Reiter-Schad, M., Adam Nilsson, Graneli, A., Tobias Ambjörnsson, Mir, K. U. & Jonas Tegenfeldt, 2015, In : Biomicrofluidics. 9, 4, 044114.

    Research output: Contribution to journalArticle

Previous 1 2 3 Next