Biomarker discovery study design for type 1 diabetes in The Environmental Determinants of Diabetes in the Young (TEDDY) study

Research output: Contribution to journalArticle

Abstract

Aims The Environmental Determinants of Diabetes in the Young planned biomarker discovery studies on longitudinal samples for persistent confirmed islet cell autoantibodies and type 1 diabetes using dietary biomarkers, metabolomics, microbiome/viral metagenomics and gene expression. Methods This article describes the details of planning The Environmental Determinants of Diabetes in the Young biomarker discovery studies using a nested case-control design that was chosen as an alternative to the full cohort analysis. In the frame of a nested case-control design, it guides the choice of matching factors, selection of controls, preparation of external quality control samples and reduction of batch effects along with proper sample allocation. Results and conclusion Our design is to reduce potential bias and retain study power while reducing the costs by limiting the numbers of samples requiring laboratory analyses. It also covers two primary end points (the occurrence of diabetes-related autoantibodies and the diagnosis of type 1 diabetes). The resulting list of case-control matched samples for each laboratory was augmented with external quality control samples. Copyright (C) 2013 John Wiley & Sons, Ltd.

Details

Authors
  • Hye-Seung Lee
  • Brant R. Burkhardt
  • Wendy McLeod
  • Susan Smith
  • Chris Eberhard
  • Kristian Lynch
  • David Hadley
  • Marian Rewers
  • Olli Simell
  • Jin-Xiong She
  • Bill Hagopian
  • Åke Lernmark
  • Beena Akolkar
  • Anette G. Ziegler
  • Jeffrey P. Krischer
Organisations
Research areas and keywords

Subject classification (UKÄ) – MANDATORY

  • Endocrinology and Diabetes

Keywords

  • batch effects, biomarker discovery, nested case-control design, TEDDY, type 1 diabetes
Original languageEnglish
Pages (from-to)424-434
JournalDiabetes/Metabolism Research & Reviews
Volume30
Issue number5
Publication statusPublished - 2014
Publication categoryResearch
Peer-reviewedYes