mzML - a community standard for mass Spectrometry data

Research output: Contribution to journalArticle

Standard

mzML - a community standard for mass Spectrometry data. / Martens, Lennart; Chambers, Matthew; Sturm, Marc; Kessner, Darren; Levander, Fredrik; Shofstahl, Jim.

In: Molecular & Cellular Proteomics, Vol. 10, No. 1, 2011, p. R110.000133.1-R110.000133.2.

Research output: Contribution to journalArticle

Harvard

Martens, L, Chambers, M, Sturm, M, Kessner, D, Levander, F & Shofstahl, J 2011, 'mzML - a community standard for mass Spectrometry data', Molecular & Cellular Proteomics, vol. 10, no. 1, pp. R110.000133.1-R110.000133.2. https://doi.org/10.1074/mcp.R110.000133

APA

Martens, L., Chambers, M., Sturm, M., Kessner, D., Levander, F., & Shofstahl, J. (2011). mzML - a community standard for mass Spectrometry data. Molecular & Cellular Proteomics, 10(1), R110.000133.1-R110.000133.2. https://doi.org/10.1074/mcp.R110.000133

CBE

Martens L, Chambers M, Sturm M, Kessner D, Levander F, Shofstahl J. 2011. mzML - a community standard for mass Spectrometry data. Molecular & Cellular Proteomics. 10(1):R110.000133.1-R110.000133.2. https://doi.org/10.1074/mcp.R110.000133

MLA

Vancouver

Martens L, Chambers M, Sturm M, Kessner D, Levander F, Shofstahl J. mzML - a community standard for mass Spectrometry data. Molecular & Cellular Proteomics. 2011;10(1):R110.000133.1-R110.000133.2. https://doi.org/10.1074/mcp.R110.000133

Author

Martens, Lennart ; Chambers, Matthew ; Sturm, Marc ; Kessner, Darren ; Levander, Fredrik ; Shofstahl, Jim. / mzML - a community standard for mass Spectrometry data. In: Molecular & Cellular Proteomics. 2011 ; Vol. 10, No. 1. pp. R110.000133.1-R110.000133.2.

RIS

TY - JOUR

T1 - mzML - a community standard for mass Spectrometry data

AU - Martens, Lennart

AU - Chambers, Matthew

AU - Sturm, Marc

AU - Kessner, Darren

AU - Levander, Fredrik

AU - Shofstahl, Jim

PY - 2011

Y1 - 2011

N2 - Mass spectrometry is a fundamental tool for discovery and analysis in the life sciences. With the rapid advances in mass spectrometry technology and methods, it has become imperative to provide a standard output format for mass spectrometry data that will facilitate data sharing and analysis. Initially, the efforts to develop a standard format for mass spectrometry data resulted in multiple formats, each designed with a different underlying philosophy. To resolve the issues associated with having multiple formats, vendors, researchers, and software developers convened under the banner of the HUPO PSI to develop a single standard. The new data format incorporated many of the desirable technical attributes from the previous data formats, while adding a number of improvements, including features such as a controlled vocabulary with validation tools to ensure consistent usage of the format, improved support for selected reaction monitoring data, and immediately available implementations to facilitate rapid adoption by the community. The resulting standard data format, mzML, is a well tested open-source format for mass spectrometer output files that can be readily utilized by the community and easily adapted for incremental advances in mass spectrometry technology.

AB - Mass spectrometry is a fundamental tool for discovery and analysis in the life sciences. With the rapid advances in mass spectrometry technology and methods, it has become imperative to provide a standard output format for mass spectrometry data that will facilitate data sharing and analysis. Initially, the efforts to develop a standard format for mass spectrometry data resulted in multiple formats, each designed with a different underlying philosophy. To resolve the issues associated with having multiple formats, vendors, researchers, and software developers convened under the banner of the HUPO PSI to develop a single standard. The new data format incorporated many of the desirable technical attributes from the previous data formats, while adding a number of improvements, including features such as a controlled vocabulary with validation tools to ensure consistent usage of the format, improved support for selected reaction monitoring data, and immediately available implementations to facilitate rapid adoption by the community. The resulting standard data format, mzML, is a well tested open-source format for mass spectrometer output files that can be readily utilized by the community and easily adapted for incremental advances in mass spectrometry technology.

U2 - 10.1074/mcp.R110.000133

DO - 10.1074/mcp.R110.000133

M3 - Article

VL - 10

SP - R110.000133.1-R110.000133.2

JO - Molecular and Cellular Proteomics

T2 - Molecular and Cellular Proteomics

JF - Molecular and Cellular Proteomics

SN - 1535-9484

IS - 1

ER -