PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.

Research output: Contribution to journalArticle


title = "PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.",
abstract = "Next-generation sequencing experiments have shown that microRNAs (miRNAs) are expressed in many different isoforms (isomiRs), whose biological relevance is often unclear. We found that mature miR-21, the most widely researched miRNA because of its importance in human disease, is produced in two prevalent isomiR forms that differ by 1 nt at their 3' end, and moreover that the 3' end of miR-21 is posttranscriptionally adenylated by the noncanonical poly(A) polymerase PAPD5. PAPD5 knockdown caused an increase in the miR-21 expression level, suggesting that PAPD5-mediated adenylation of miR-21 leads to its degradation. Exoribonuclease knockdown experiments followed by small-RNA sequencing suggested that PARN degrades miR-21 in the 3'-to-5' direction. In accordance with this model, microarray expression profiling demonstrated that PAPD5 knockdown results in a down-regulation of miR-21 target mRNAs. We found that disruption of the miR-21 adenylation and degradation pathway is a general feature in tumors across a wide range of tissues, as evidenced by data from The Cancer Genome Atlas, as well as in the noncancerous proliferative disease psoriasis. We conclude that PAPD5 and PARN mediate degradation of oncogenic miRNA miR-21 through a tailing and trimming process, and that this pathway is disrupted in cancer and other proliferative diseases.",
author = "Joost Boele and Helena Persson and Shin, {Jay W} and Yuri Ishizu and Inga Newie and Rolf S{\"o}kilde and Hawkins, {Shannon M} and Cristian Coarfa and Kazuhiro Ikeda and Ken-Ichi Takayama and Kuniko Horie-Inoue and Yoshinari Ando and Burroughs, {A Maxwell} and Chihiro Sasaki and Chizuru Suzuki and Mizuho Sakai and Shintaro Aoki and Ayumi Ogawa and Akira Hasegawa and Marina Lizio and Kaoru Kaida and Bas Teusink and Piero Carninci and Harukazu Suzuki and Satoshi Inoue and Gunaratne, {Preethi H} and Carlos Rovira and Yoshihide Hayashizaki and {de Hoon}, {Michiel J L}",
year = "2014",
doi = "10.1073/pnas.1317751111",
language = "English",
volume = "111",
pages = "11467--11472",
journal = "Proceedings of the National Academy of Sciences",
issn = "1091-6490",
publisher = "National Acad Sciences",
number = "31",