Proteomic 2DE database for spot selection, automated annotation, and data analysis

Research output: Contribution to journalArticle

Abstract

We present a software solution that enables faster and more accurate data analysis of 2DE/MALDI TOF MS data. The software supports data analysis through a number of automated data selection functions and advanced graphical tools. Once protein identities are determined using MALDI TOF MS, automated data retrieval from online databases provides biological information. The software, called 2DDB, reduces analysis time to a fraction without losing any quality compared to more manual data analysis. The database contains over 100 000 data entries, and selected parts can be reached at http://2ddb.org.

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Research areas and keywords

Subject classification (UKÄ) – MANDATORY

  • Cell and Molecular Biology

Keywords

  • 2DE/MALDI TOF MS, spot selection, automated annotation, 2DDB
Original languageEnglish
Pages (from-to)135-138
JournalJournal of Proteome Research
Volume1
Issue number2
Publication statusPublished - 2002
Publication categoryResearch
Peer-reviewedYes

Bibliographic note

The information about affiliations in this record was updated in December 2015. The record was previously connected to the following departments: Analytical Chemistry (S/LTH) (011001004), Lung Biology (013212002)