Somatic mutations reveal asymmetric cellular dynamics in the early human embryo

Research output: Contribution to journalArticle

Abstract

Somatic cells acquire mutations throughout the course of an individual's life. Mutations occurring early in embryogenesis are often present in a substantial proportion of, but not all, cells in postnatal humans and thus have particular characteristics and effects. Depending on their location in the genome and the proportion of cells they are present in, these mosaic mutations can cause a wide range of genetic disease syndromes and predispose carriers to cancer. They have a high chance of being transmitted to offspring as de novo germline mutations and, in principle, can provide insights into early human embryonic cell lineages and their contributions to adult tissues. Although it is known that gross chromosomal abnormalities are remarkably common in early human embryos, our understanding of early embryonic somatic mutations is very limited. Here we use whole-genome sequences of normal blood from 241 adults to identify 163 early embryonic mutations. We estimate that approximately three base substitution mutations occur per cell per cell-doubling event in early human embryogenesis and these are mainly attributable to two known mutational signatures. We used the mutations to reconstruct developmental lineages of adult cells and demonstrate that the two daughter cells of many early embryonic cell-doubling events contribute asymmetrically to adult blood at an approximately 2:1 ratio. This study therefore provides insights into the mutation rates, mutational processes and developmental outcomes of cell dynamics that operate during early human embryogenesis.

Details

Authors
  • Young Seok Ju
  • Inigo Martincorena
  • Moritz Gerstung
  • Mia Petljak
  • Ludmil B. Alexandrov
  • Raheleh Rahbari
  • David C. Wedge
  • Helen R. Davies
  • Manasa Ramakrishna
  • Anthony Fullam
  • Sancha Martin
  • Christopher Alder
  • Nikita Patel
  • Steve Gamble
  • Sarah O'Meara
  • DIlip D. Giri
  • Torril Sauer
  • Sarah E Pinder
  • Colin A Purdie
  • Henk Stunnenberg
  • Marc van de Vijver
  • Benita K T Tan
  • Carlos Caldas
  • Andrew Tutt
  • Naoto T Ueno
  • Laura J Van 't Veer
  • John W. M. Martens
  • Christos Sotiriou
  • Stian Knappskog
  • Paul N. Span
  • Sunil R. Lakhani
  • Jórunn Erla Eyfjörd
  • Anne-Lise Børresen-Dale
  • Andrea L. Richardson
  • Alastair M Thompson
  • Alain Viari
  • Matthew E. Hurles
  • Serena Nik-Zainal
  • Peter J. Campbell
  • Michael R. Stratton
Organisations
External organisations
  • Wellcome Trust Sanger Institute
  • European Bioinformatics Institute
  • Los Alamos National Laboratory
  • Memorial Sloan-Kettering Cancer Center
  • Akershus University Hospital
  • Guy's and St Thomas' NHS Foundation Trust
  • University of Dundee
  • Academic Medical Center
  • Singapore General Hospital
  • University of Cambridge
  • King's College London
  • Institute of Cancer Research London
  • University of Texas
  • University of Texas Health Science Centre
  • Erasmus University Medical Center
  • Institut Jules Bordet
  • University of Bergen
  • Haukeland University Hospital
  • Radboud Institute for Health Sciences
  • University of Queensland
  • Royal Brisbane and Women's Hospital
  • University of Iceland
  • Norwegian Radium Hospital
  • University of Oslo
  • Johns Hopkins University
  • Centre Léon Bérard
  • Korea Advanced Institute of Science and Technology (KAIST)
  • Wellcome Trust Centre for Human Genetics
Research areas and keywords

Subject classification (UKÄ) – MANDATORY

  • Medical Genetics
Original languageEnglish
Pages (from-to)714-718
Number of pages5
JournalNature
Volume543
Issue number7647
Publication statusPublished - 2017 Mar 30
Publication categoryResearch
Peer-reviewedYes