Journal of Computational Chemistry, 1096-987X
Tidskrift
- Artikel i vetenskaplig tidskrift
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Mechanism and rate constants of the CH2 + CH2CO reactions in triplet and singlet states: A theoretical study
Anna S. Savchenkova, Alexander S. Semenikhin, Ivan V. Chechet, Sergey G. Matveev, Alexander A. Konnov & Alexander M. Mebel, 2019 jan 15, I: Journal of Computational Chemistry. 40, 2, s. 387-399Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
Can MM/GBSA calculations be sped up by system truncation?
Majda Misini Ignjatović, Paulius Mikulskis, Pär Söderhjelm & Ulf Ryde, 2018 mar 15, I: Journal of Computational Chemistry. 39, 7, s. 361-372 12 s.Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
Converging ligand-binding free energies obtained with free-energy perturbations at the quantum mechanical level
Martin A. Olsson, Pär Söderhjelm & Ulf Ryde, 2016 jun 30, I: Journal of Computational Chemistry. 37, 17, s. 1589-1600 12 s.Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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Confined polyelectrolytes: The complexity of a simple system.
Sandra C C Nunes, Marie Skepö & Alberto A C C Pais, 2015, I: Journal of Computational Chemistry. 36, 21, s. 1579-1586Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
Binding affinities by alchemical perturbation using QM/MM with a large QM system and polarizable MM model.
Samuel Genheden, Ulf Ryde & Pär Söderhjelm, 2015, I: Journal of Computational Chemistry. 36, 28, s. 2114-2124Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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Molcas 8: New capabilities for multiconfigurational quantum chemical calculations across the periodic table.
Francesco Aquilante, Jochen Autschbach, Rebecca K Carlson, Liviu F Chibotaru, Mickaël G Delcey, Luca De Vico, Ignacio Fdez Galván, Nicolas Ferré, Luis Manuel Frutos, Laura Gagliardi, Marco Garavelli, Angelo Giussani, Chad E Hoyer, Giovanni Li Manni, Hans Lischka, Dongxia Ma, Per-Åke Malmqvist, Thomas Müller, Artur Nenov, Massimo Olivucci & 18 andra, , 2015, I: Journal of Computational Chemistry.Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
MOLSIM: A modular molecular simulation software.
Jurij Reščič & Per Linse, 2015, I: Journal of Computational Chemistry. 36, 16, s. 1259-1274Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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A new module for constrained multi-fragment geometry optimization in internal coordinates implemented in the MOLCAS package.
Victor Vysotskiy, Jonas Boström & Valera Veryazov, 2013, I: Journal of Computational Chemistry. 34, 30, s. 2657-2665Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure.
Wouter Boomsma, Jes Frellsen, Tim Harder, Sandro Bottaro, Kristoffer E Johansson, Pengfei Tian, Kasper Stovgaard, Christian Andreetta, Simon Olsson, Jan B Valentin, Lubomir D Antonov, Anders S Christensen, Mikael Borg, Jan H Jensen, Kresten Lindorff-Larsen, Jesper Ferkinghoff-Borg & Thomas Hamelryck, 2013, I: Journal of Computational Chemistry. 34, 19, s. 1697-1705Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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Parallelization of a multiconfigurational perturbation theory
Steven Vancoillie, Mickael G. Delcey, Roland Lindh, Victor Vysotskiy, Per-Åke Malmqvist & Valera Veryazov, 2013, I: Journal of Computational Chemistry. 34, 22, s. 1937-1948Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
A semiempirical approach to ligand-binding affinities: Dependence on the Hamiltonian and corrections.
Paulius Mikulskis, Samuel Genheden, Karin Wichmann & Ulf Ryde, 2012, I: Journal of Computational Chemistry. 33, 12, s. 1179-1189Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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Stepwise Disproportionation in Polyelectrolyte Complexes
R. S. Dias, Per Linse & A. A. C. C. paisi, 2011, I: Journal of Computational Chemistry. 32, 12, s. 2697-2707Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
A comparison of different initialization protocols to obtain statistically independent molecular dynamics simulations.
Samuel Genheden & Ulf Ryde, 2011, I: Journal of Computational Chemistry. 32, 2, s. 187-195Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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How to obtain statistically converged MM/GBSA results.
Samuel Genheden & Ulf Ryde, 2010, I: Journal of Computational Chemistry. 31, Online 13 Jul 2009, s. 837-846Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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A NEMO potential that includes the dipole-quadrupole and quadrupole-quadrupole polarizability.
Asbjörn Holt, Jonas Boström, Gunnar Karlström & Roland Lindh, 2010, I: Journal of Computational Chemistry. 31, 8, s. 1583-1591Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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Conformational dependence of charges in protein simulations.
Pär Söderhjelm & Ulf Ryde, 2009, I: Journal of Computational Chemistry. 30, 5, s. 750-760Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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Inclusion of the quadrupole moment when describing polarization. The effect of the dipole-quadrupole polarizability.
Asbjörn Holt & Gunnar Karlström, 2008, I: Journal of Computational Chemistry. 29, 12, s. 2033-2038Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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Induction correction model for rotation of two or three dihedral angles.
Asbjörn Holt & Gunnar Karlström, 2008, I: Journal of Computational Chemistry. 29, 12, s. 1905-1911Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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An intramolecular induction correction model of the molecular dipole moment.
Asbjörn Holt & Gunnar Karlström, 2008, I: Journal of Computational Chemistry. 29, 7, s. 1084-1091Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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Accuracy of distributed multipoles and polarizabilities: Comparison between the LoProp and MpProp models
Pär Söderhjelm, Jesper Wisborg Krogh, Gunnar Karlström, Ulf Ryde & Roland Lindh, 2007, I: Journal of Computational Chemistry. 28, 6, s. 1083-1090Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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PROFASI: A Monte Carlo simulation package for protein folding and aggregation
Anders Irbäck & Sandipan Mohanty, 2006, I: Journal of Computational Chemistry. 27, 13, s. 1548-1555Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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The reaction mechanism of iron and manganese superoxide dismutases studied by theoretical calculations
Lubomir Rulisek, Kasper Jensen, Kristoffer Lundgren & Ulf Ryde, 2006, I: Journal of Computational Chemistry. 27, 12, s. 1398-1414Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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Inter- and intramolecular potential for the N-formylglycinamide-water system. A comparison between theoretical modeling and empirical force fields
J M Hermida-Ramon, S Brdarski, Gunnar Karlström & Ulf Berg, 2003, I: Journal of Computational Chemistry. 24, 2, s. 161-176Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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Restrained point-charge models for disaccharides
E Sigfridsson, Ulf Ryde & BL Bush, 2002, I: Journal of Computational Chemistry. 23, 3, s. 351-364Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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Quantum chemical geometry optimizations in proteins using crystallographic raw data.
Ulf Ryde, Lars Olsen & Kristina Nilsson, 2002, I: Journal of Computational Chemistry. 23, 11, s. 1058-1070Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
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INDO Calculations of Small Copper Clusters, and CO Adsorbed on Copper (100) Surfaces
Petter Persson, J. Bustad & M. C. Zerner, 2000, I: Journal of Computational Chemistry. 21, 14, s. 1221-1228Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift
- Översiktsartikel
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Software News and Update MOLCAS 7: The Next Generation
Francesco Aquilante, Luca De Vico, Nicolas Ferre, Giovanni Ghigo, Per-Åke Malmqvist, Pavel Neogrady, Thomas Bondo Pedersen, Michal Pitonak, Markus Reiher, Björn Roos, Luis Serrano-Andres, Miroslav Urban, Valera Veryazov & Roland Lindh, 2010, I: Journal of Computational Chemistry. 31, 1, s. 224-247Forskningsoutput: Tidskriftsbidrag › Översiktsartikel
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Comparison of methods for deriving atomic charges from the electrostatic potential and moments
Emma Sigfridsson & Ulf Ryde, 1998 mar, I: Journal of Computational Chemistry. 19, 4, s. 377-395 19 s.Forskningsoutput: Tidskriftsbidrag › Översiktsartikel