Journal of Proteome Research, 1535-3893

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  1. Detection and identification of protein isoforms using cluster analysis of MALDI-MS mass spectra

    Alm, R., Johansson, P., Hjerno, K., Cecilia Emanuelsson, Markus Ringnér & Jari Häkkinen, 2006, I : Journal of Proteome Research. 5, 4, s. 785-792

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  2. Proteomic variation is as large within as between strawberry varieties

    Alm, R., Ekefjard, A., Krogh, M., Jari Häkkinen & Cecilia Emanuelsson, 2007, I : Journal of Proteome Research. 6, 8, s. 3011-3020

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  3. Automating MALDI Sample Plate Loading

    Andersson, T., Johansson, M., Bolmsjö, G. & Peter James, 2007, I : Journal of Proteome Research. 6, 2, s. 894-896

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  4. Critical Comparison of Multidimensional Separation Methods for Increasing Protein Expression Coverage

    Antberg, L., Cifani, P., Sandin, M., Fredrik Levander & Peter James, 2012, I : Journal of Proteome Research. 11, 5, s. 2644-2652

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  5. Mass Spectrometry Analysis of a Protein Kinase CK2 beta Subunit Interactome Isolated from Mouse Brain by Affinity Chromatography.

    Arrigoni, G., Pagano, M., Sarno, S., Cesaro, L., Peter James & Pinna, L., 2008, I : Journal of Proteome Research. 7, 3, s. 990-1000

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  6. Comparison of MS/MS methods for protein identification from 2D-PAGE

    Arrigoni, G., Celine Fernandez, Cecilia Holm, Scigelova, M. & Peter James, 2006, I : Journal of Proteome Research. 5, 9, s. 2294-2300

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  7. Automated PreScan function for scanning fluorescently stained 2D-PAGE gels

    Bäck, P., Sofia Waldemarson & Peter James, 2005, I : Journal of Proteome Research. 4, 5, s. 1511-1515

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  8. Automating gel image acquisition

    Bäck, P., Nagard, F., Bolmsjö, G., Sofia Waldemarson & Peter James, 2003, I : Journal of Proteome Research. 2, 6, s. 662-664

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  9. Quantification of Membrane Proteins Using Nonspecific Protease Digestions

    Bendz, M., Carlsson Möller, M., Arrigoni, G., Wåhlander, Å., Stella, R., Cappadona, S., Fredrik Levander, Lars Hederstedt & Peter James, 2009, I : Journal of Proteome Research. 8, 12, s. 5666-5673

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  10. Large-Scale Proteomics Analysis of Human Ovarian Cancer for Biomarkers

    Bengtsson, S., Krogh, M., Al-Khalili Szigyarto, C., Uhlen, M., Schedvins, K., Silfversward, C., Linder, S., Auer, G., Alaiya, A. & Peter James, 2007, I : Journal of Proteome Research. 6, 4, s. 1440-1450

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  11. Membrane protein identification: N-terminal labeling of nontryptic membrane protein peptides facilitates database searching

    Bentz, M., Wårell, K., Fredrik Levander & Peter James, 2008, I : Journal of Proteome Research. 7, 2, s. 659-665

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  12. 140 mouse brain proteins identified by Ca2+-calmodulin affinity chromatography and tandem mass spectrometry.

    Berggård, T., Arrigoni, G., Olof Olsson, Malin Fex, Sara Linse & Peter James, 2006, I : Journal of Proteome Research. 5, 3, s. 669-687

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  13. Biology/Disease-Driven Initiative on Protein-Aggregation Diseases of the Human Proteome Project: Goals and Progress to Date

    Boersema, P. J., Melnik, A., Hazenberg, B. P. C., Melinda Rezeli, György Marko-Varga, Kamiie, J., Portelius, E., Blennow, K., Zubarev, R. A., Polymenidou, M. & Picotti, P., 2018 dec 7, I : Journal of Proteome Research. 17, 12, s. 4072-4084

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  14. Analytical Validation Considerations of Multiplex Mass-Spectrometry-Based Proteomic Platforms for Measuring Protein Biomarkers

    Boja, E. S., Fehniger, T., Baker, M. S., György Marko-Varga & Rodriguez, H., 2014, I : Journal of Proteome Research. 13, 12, s. 5325-5332

    Forskningsoutput: TidskriftsbidragDebate/Note/Editorial

  15. Blood Metabolic Signatures of Body Mass Index: A Targeted Metabolomics Study in the EPIC Cohort

    Carayol, M., Leitzmann, M. F., Ferrari, P., Zamora-Ros, R., Achaintre, D., Stepien, M., Schmidt, J. A., Travis, R. C., Overvad, K., Tjønneland, A., Hansen, L., Kaaks, R., Kühn, T., Boeing, H., Bachlechner, U., Trichopoulou, A., Bamia, C., Palli, D., Agnoli, C., Tumino, R. & 18 andraVineis, P., Panico, S., Quirós, J. R., Sánchez-Cantalejo, E., Huerta, J. M., Ardanaz, E., Arriola, L., Agudo, A., Nilsson, J., Olle Melander, Bueno de Mesquita, B., Peeters, P. H., Wareham, N., Khaw, K-T., Jenab, M., Key, T. J., Scalbert, A. & Rinaldi, S., 2017 sep 1, I : Journal of Proteome Research. 16, 9, s. 3137-3146 10 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  16. Characterization of the outer membrane protein profile from disease-related Helicobacter pylori isolates by subcellular fractionation and nano-LC FT-ICR MS analysis

    Carlsohn, E., Nyström, J., Karlsson, H., Svennerholm, A-M. & Carol L Nilsson, 2006 nov, I : Journal of Proteome Research. 5, 11, s. 3197-204 8 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  17. Data Processing Has Major Impact on the Outcome of Quantitative Label-Free LC-MS Analysis

    Chawade, A., Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2015, I : Journal of Proteome Research. 14, 2, s. 676-687

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  18. Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets

    Chawade, A., Alexandersson, E. & Fredrik Levander, 2014, I : Journal of Proteome Research. 13, 6, s. 3114-3120

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  19. Targeted Proteomics Approach for Precision Plant Breeding

    Chawade, A., Alexandersson, E., Bengtsson, T., Andreasson, E. & Fredrik Levander, 2016 feb 5, I : Journal of Proteome Research. 15, 2, s. 638-642 9 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  20. Hunting for Protein Markers of Hypoxia by Combining Plasma Membrane Enrichment with a New Approach to Membrane Protein Analysis

    Cifani, P., Bendz, M., Wårell, K., Hansson, K. M., Fredrik Levander, Sandin, M., Krogh, M., Ovenberger, M., Fredlund, E., Marica Vaapil, Alexander Pietras, Sven Påhlman & Peter James, 2011, I : Journal of Proteome Research. 10, 4, s. 1645-1656

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  21. Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors.

    Cifani, P., Kirik, U., Sofia Waldemarson & Peter James, 2015, I : Journal of Proteome Research. 14, 7, s. 2819-2827

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  22. Proteomic profiling of plasma in Huntington's disease reveals neuroinflammatory activation and biomarker candidates

    Dalrymple, A., Wild, E. J., Joubert, R., Sathasivam, K., Bjorkqvist, M., Åsa Petersén, Jackson, G. S., Isaacs, J. D., Kristiansen, M., Bates, G. P., Leavitt, B. R., Keir, G., Ward, M. & Tabrizi, S. J., 2007, I : Journal of Proteome Research. 6, 7, s. 2833-2840

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  23. Targeted MS Assay Predicting Tamoxifen Resistance in Estrogen-Receptor-Positive Breast Cancer Tissues and Sera

    Tommaso De Marchi, Kuhn, E., Dekker, L. J. M., Stingl, C., Braakman, R. B. H., Opdam, M., Linn, S. C., Sweep, F. C. G. J., Span, P. N., Luider, T. M., Foekens, J. A., Martens, J. W. M., Carr, S. A. & Umar, A., 2016 apr 1, I : Journal of Proteome Research. 15, 4, s. 1230-42 13 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  24. Design of recombinant antibody microarrays for cell surface membrane proteomics

    Dexlin Mellby, L., Ingvarsson, J., Frendeus, B., Carl Borrebaeck & Christer Wingren, 2008, I : Journal of Proteome Research. 7, 1, s. 319-327

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  25. Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project

    Diez, P., Droste, C., Degano, R. M., Gonzalez-Munoz, M., Ibarrola, N., Perez-Andres, M., Garin-Muga, A., Segura, V., György Marko-Varga, LaBaer, J., Orfao, A., Corrales, F. J., De Las Rivas, J. & Fuentes, M., 2015, I : Journal of Proteome Research. 14, 9, s. 3530-3540

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  26. Discovery of a novel B-Raf fusion protein related to c-Met drug resistance

    Dillon, R., Carol L Nilsson, Shi, S. D-H., Lee, N. V., Krastins, B. & Greig, M. J., 2011 nov 4, I : Journal of Proteome Research. 10, 11, s. 5084-94 11 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  27. Genomics, transcriptomics, and peptidomics of Daphnia pulex neuropeptides and protein hormones

    Dircksen, H., Neupert, S., Predel, R., Verleyen, P., Huybrechts, J., Strauss, J., Hauser, F., Stafflinger, E., Schneider, M., Pauwels, K., Schoofs, L. & Grimmelikhuijzen, C. J. P., 2011 okt 7, I : Journal of Proteome Research. 10, 10, s. 4478-4504

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  28. In-Source Decay Causes Artifacts in SELDI-TOF MS Spectra.

    Lars Ekblad, Bo Baldetorp, Mårten Fernö, Håkan Olsson & Charlotte Welinder, 2007, I : Journal of Proteome Research. 6, 4, s. 1609-1614

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  29. Aqueous two-phase partitioning for proteomic monitoring of cell surface biomarkers in human peripheral blood mononuclear cells

    Everberg, H., Peterson Wulff, R., Rak, S., Folke Tjerneld & Cecilia Emanuelsson, 2006, I : Journal of Proteome Research. 5, 5, s. 1168-1175

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  30. Contribution of Antibody-based Protein Profiling to the Human Chromosome-centric Proteome Project (C-HPP)

    Fagerberg, L., Oksvold, P., Skogs, M., Algenas, C., Lundberg, E., Ponten, F., Sivertsson, A., Odeberg, J., Klevebring, D., Kampf, C., Asplund, A., Sjostedt, E., Szigyarto, C. A-K., Edqvist, P-H., Olsson, I., Rydberg, U., Hudson, P., Takanen, J. O., Berling, H., Bjorling, L. & 12 andraTegel, H., Rockberg, J., Nilsson, P., Navani, S., Karin Jirström, Mulder, J., Schwenk, J. M., Zwahlen, M., Hober, S., Forsberg, M., von Feilitzen, K. & Uhlen, M., 2013, I : Journal of Proteome Research. 12, 6, s. 2439-2448

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  31. Four Areas of Engagement Requiring Strengthening in Modern Proteomics Today.

    Fehniger, T., Boja, E. S., Rodriguez, H., Baker, M. S. & György Marko-Varga, 2014, I : Journal of Proteome Research. 13, 12, s. 5310-5318

    Forskningsoutput: TidskriftsbidragDebate/Note/Editorial

  32. Exploring the context of the lung proteome within the airway mucosa following allergen challenge.

    Fehniger, T. E., Sato-Folatre, J-G., Johan Malmström, Berglund, M., Lindberg, C., Brange, C., Lindberg, H. & Marko-Varga, G., 2004, I : Journal of Proteome Research. 3, 2, s. 307-320

    Forskningsoutput: TidskriftsbidragÖversiktsartikel

  33. Metabolomic and proteomic analysis of a clonal insulin-producing beta-cell line (INS-1 832/13).

    Celine Fernandez, Krus, U., Hallgard, E., Peter Spégel, Cecilia Holm, Krogh, M., Wårell, K., Peter James & Hindrik Mulder, 2008, I : Journal of Proteome Research. 7, 1, s. 400-411

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  34. Omics Analyses Reveal a Potential Link between Hormone-Sensitive Lipase and Polyamine Metabolism.

    Fernandez, C., Krogh, M., Wårell, K., Alm, K., Stina Oredsson, Lo Persson, Peter James & Cecilia Holm, 2009, I : Journal of Proteome Research. 8, s. 5008-5019

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  35. Integrated protein microchip assay with dual fluorescent- and MALDI read-out

    Finnskog, D., Ressine, A., Thomas Laurell & György Marko-Varga, 2004, I : Journal of Proteome Research. 3, 5, s. 988-994

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  36. Reproducibility of tryptic digestion investigated by quantitative fourier transform ion cyclotron resonance mass spectrometry

    Hagman, C., Ramstrom, M., Bentz, M., Peter James, Hakansson, P. & Bergquist, J., 2005, I : Journal of Proteome Research. 4, 2, s. 394-399

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  37. Structural analysis of 2D-gel-separated glycoproteins from human cerebrospinal fluid by tandem high-resolution mass spectrometry

    Håkansson, K., Emmett, M. R., Marshall, A. G., Davidsson, P. & Carol L Nilsson, 2003 dec 25, I : Journal of Proteome Research. 2, 6, s. 581-8 8 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  38. The Proteios Software Environment: an extensible multiuser platform for management and analysis of proteomics data

    Jari Häkkinen, Vincic, G., Månsson, O., Wårell, K. & Fredrik Levander, 2009, I : Journal of Proteome Research. 8, 6, s. 3037-3043

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  39. Inflammatory response in white adipose tissue in the non-obese hormone-sensitive lipase null mouse model.

    Ola Hansson, Ström, K., Güner, N., Nils Wierup, Sundler, F., Peter Höglund & Cecilia Holm, 2006, I : Journal of Proteome Research. 5, 7, s. 1701-1710

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  40. Glycomic and transcriptomic response of GSC11 glioblastoma stem cells to STAT3 phosphorylation inhibition and serum-induced differentiation

    He, H., Carol L Nilsson, Emmett, M. R., Marshall, A. G., Kroes, R. A., Moskal, J. R., Ji, Y., Colman, H., Priebe, W., Lang, F. & Conrad, C. A., 2010 maj 7, I : Journal of Proteome Research. 9, 5, s. 2098-2108 11 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  41. An Integrated Workflow for Multiplex CSF Proteomics and Peptidomics-Identification of Candidate Cerebrospinal Fluid Biomarkers of Alzheimer's Disease

    Holtta, M., Lennart Minthon, Oskar Hansson, Holmen-Larsson, J., Pike, I., Ward, M., Kuhn, K., Ruetschi, U., Zetterberg, H., Blennow, K. & Gobom, J., 2015, I : Journal of Proteome Research. 14, 2, s. 654-663

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  42. Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project

    Horvatovich, P., Lundberg, E., Chen, Y-J., Sung, T-Y., He, F., Nice, E., Goode, R., Yu, S., Ranganathan, S., Baker, M., Domont, R., Valesquez, E., Li, D., Liu, S., Wang, Q., He, Q-Y., Menon, R., Guan, Y., Corrales, F., Segura, V. & 33 andraCasal, I., Pascual-Montano, A., Albar, J. P., Fuentes, M., Gonzalez-Gonzalez, M., Diez, P., Ibarolla, N., Degano, R., Mohammed, Y., Borchers, C., Urbani, A., Soggiu, A., Yamamoto, T., Archakov, A., Ponomarenko, E., Lisitsa, A., Lichti, C., Mostovenko, E., Kroes, R., Melinda Rezeli, Végvári, Á., Fehniger, T., Bischoff, R., Vizcaíno, J. A., Deutsch, E., Lane, L., Nilsson, C., György Marko-Varga, Omenn, G., Jeong, S-K., Cho, J-Y., Paik, Y-K. & Hancock, W., 2015, I : Journal of Proteome Research. 14, 9, s. 3415-3431

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  43. In vitro Transcription/Translation System: A Versatile Tool in the Search for Missing Proteins

    Horvatovich, P., Végvári, Á., Saul, J., Park, J., Qiu, J., Syring, M., Pirrotte, P., Petritis, K., Tegeler, T., Aziz, M., Fuentes, M., Diez, P., Gonzalez-Gonzalez, M., Ibarrola, N., Droste, C., De Las Rivas, J., Gil, C., Clemente, F., Hernaez, M. L., Corrales, F. & 6 andraNilsson, C., Berven, F., Bischoff, R., Fehniger, T., LaBaer, J. & György Marko-Varga, 2015, I : Journal of Proteome Research. 14, 9, s. 3441-3451

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  44. Elucidating the Molecular Composition of Cartilage by Proteomics

    Hsueh, M. F., Khabut, A., Sven Kjellström, Patrik Önnerfjord & Kraus, V. B., 2016 feb 5, I : Journal of Proteome Research. 15, 2, s. 374-388 15 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  45. Design of recombinant antibody microarrays for serum protein profiling: Targeting of complement proteins

    Ingvarsson, J., Larsson, A., Sjöholm, A., Lennart Truedsson, Bo Jansson, Carl Borrebaeck & Christer Wingren, 2007, I : Journal of Proteome Research. 6, 9, s. 3527-3536

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

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