Journal of Proteome Research, 1535-3893

Tidskrift

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  1. Detection and identification of protein isoforms using cluster analysis of MALDI-MS mass spectra

    Alm, R., Johansson, P., Hjerno, K., Cecilia Emanuelsson, Markus Ringnér & Jari Häkkinen, 2006, I : Journal of Proteome Research. 5, 4, s. 785-792

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  2. Proteomic variation is as large within as between strawberry varieties

    Alm, R., Ekefjard, A., Krogh, M., Jari Häkkinen & Cecilia Emanuelsson, 2007, I : Journal of Proteome Research. 6, 8, s. 3011-3020

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  3. Automating MALDI Sample Plate Loading

    Andersson, T., Johansson, M., Bolmsjö, G. & Peter James, 2007, I : Journal of Proteome Research. 6, 2, s. 894-896

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  4. Critical Comparison of Multidimensional Separation Methods for Increasing Protein Expression Coverage

    Antberg, L., Cifani, P., Sandin, M., Fredrik Levander & Peter James, 2012, I : Journal of Proteome Research. 11, 5, s. 2644-2652

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  5. Mass Spectrometry Analysis of a Protein Kinase CK2 beta Subunit Interactome Isolated from Mouse Brain by Affinity Chromatography.

    Arrigoni, G., Pagano, M., Sarno, S., Cesaro, L., Peter James & Pinna, L., 2008, I : Journal of Proteome Research. 7, 3, s. 990-1000

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  6. Comparison of MS/MS methods for protein identification from 2D-PAGE

    Arrigoni, G., Celine Fernandez, Cecilia Holm, Scigelova, M. & Peter James, 2006, I : Journal of Proteome Research. 5, 9, s. 2294-2300

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  7. Automated PreScan function for scanning fluorescently stained 2D-PAGE gels

    Bäck, P., Sofia Waldemarson & Peter James, 2005, I : Journal of Proteome Research. 4, 5, s. 1511-1515

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  8. Automating gel image acquisition

    Bäck, P., Nagard, F., Bolmsjö, G., Sofia Waldemarson & Peter James, 2003, I : Journal of Proteome Research. 2, 6, s. 662-664

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  9. Quantification of Membrane Proteins Using Nonspecific Protease Digestions

    Bendz, M., Carlsson Möller, M., Arrigoni, G., Wåhlander, Å., Stella, R., Cappadona, S., Fredrik Levander, Lars Hederstedt & Peter James, 2009, I : Journal of Proteome Research. 8, 12, s. 5666-5673

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  10. Large-Scale Proteomics Analysis of Human Ovarian Cancer for Biomarkers

    Bengtsson, S., Krogh, M., Al-Khalili Szigyarto, C., Uhlen, M., Schedvins, K., Silfversward, C., Linder, S., Auer, G., Alaiya, A. & Peter James, 2007, I : Journal of Proteome Research. 6, 4, s. 1440-1450

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  11. Membrane protein identification: N-terminal labeling of nontryptic membrane protein peptides facilitates database searching

    Bentz, M., Wårell, K., Fredrik Levander & Peter James, 2008, I : Journal of Proteome Research. 7, 2, s. 659-665

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  12. 140 mouse brain proteins identified by Ca2+-calmodulin affinity chromatography and tandem mass spectrometry.

    Berggård, T., Arrigoni, G., Olof Olsson, Malin Fex, Sara Linse & Peter James, 2006, I : Journal of Proteome Research. 5, 3, s. 669-687

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  13. Biology/Disease-Driven Initiative on Protein-Aggregation Diseases of the Human Proteome Project: Goals and Progress to Date

    Boersema, P. J., Melnik, A., Hazenberg, B. P. C., Melinda Rezeli, György Marko-Varga, Kamiie, J., Portelius, E., Blennow, K., Zubarev, R. A., Polymenidou, M. & Picotti, P., 2018 dec 7, I : Journal of Proteome Research. 17, 12, s. 4072-4084

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  14. Analytical Validation Considerations of Multiplex Mass-Spectrometry-Based Proteomic Platforms for Measuring Protein Biomarkers

    Boja, E. S., Fehniger, T., Baker, M. S., György Marko-Varga & Rodriguez, H., 2014, I : Journal of Proteome Research. 13, 12, s. 5325-5332

    Forskningsoutput: TidskriftsbidragDebate/Note/Editorial

  15. Blood Metabolic Signatures of Body Mass Index: A Targeted Metabolomics Study in the EPIC Cohort

    Carayol, M., Leitzmann, M. F., Ferrari, P., Zamora-Ros, R., Achaintre, D., Stepien, M., Schmidt, J. A., Travis, R. C., Overvad, K., Tjønneland, A., Hansen, L., Kaaks, R., Kühn, T., Boeing, H., Bachlechner, U., Trichopoulou, A., Bamia, C., Palli, D., Agnoli, C., Tumino, R. & 18 andraVineis, P., Panico, S., Quirós, J. R., Sánchez-Cantalejo, E., Huerta, J. M., Ardanaz, E., Arriola, L., Agudo, A., Nilsson, J., Olle Melander, Bueno de Mesquita, B., Peeters, P. H., Wareham, N., Khaw, K-T., Jenab, M., Key, T. J., Scalbert, A. & Rinaldi, S., 2017 sep 1, I : Journal of Proteome Research. 16, 9, s. 3137-3146 10 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  16. Characterization of the outer membrane protein profile from disease-related Helicobacter pylori isolates by subcellular fractionation and nano-LC FT-ICR MS analysis

    Carlsohn, E., Nyström, J., Karlsson, H., Svennerholm, A-M. & Carol L Nilsson, 2006 nov, I : Journal of Proteome Research. 5, 11, s. 3197-204 8 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  17. Data Processing Has Major Impact on the Outcome of Quantitative Label-Free LC-MS Analysis

    Chawade, A., Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2015, I : Journal of Proteome Research. 14, 2, s. 676-687

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  18. Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets

    Chawade, A., Alexandersson, E. & Fredrik Levander, 2014, I : Journal of Proteome Research. 13, 6, s. 3114-3120

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  19. Targeted Proteomics Approach for Precision Plant Breeding

    Chawade, A., Alexandersson, E., Bengtsson, T., Andreasson, E. & Fredrik Levander, 2016 feb 5, I : Journal of Proteome Research. 15, 2, s. 638-642 9 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  20. Hunting for Protein Markers of Hypoxia by Combining Plasma Membrane Enrichment with a New Approach to Membrane Protein Analysis

    Cifani, P., Bendz, M., Wårell, K., Hansson, K. M., Fredrik Levander, Sandin, M., Krogh, M., Ovenberger, M., Fredlund, E., Marica Vaapil, Alexander Pietras, Sven Påhlman & Peter James, 2011, I : Journal of Proteome Research. 10, 4, s. 1645-1656

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  21. Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors.

    Cifani, P., Kirik, U., Sofia Waldemarson & Peter James, 2015, I : Journal of Proteome Research. 14, 7, s. 2819-2827

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  22. Proteomic profiling of plasma in Huntington's disease reveals neuroinflammatory activation and biomarker candidates

    Dalrymple, A., Wild, E. J., Joubert, R., Sathasivam, K., Bjorkqvist, M., Åsa Petersén, Jackson, G. S., Isaacs, J. D., Kristiansen, M., Bates, G. P., Leavitt, B. R., Keir, G., Ward, M. & Tabrizi, S. J., 2007, I : Journal of Proteome Research. 6, 7, s. 2833-2840

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  23. Targeted MS Assay Predicting Tamoxifen Resistance in Estrogen-Receptor-Positive Breast Cancer Tissues and Sera

    Tommaso De Marchi, Kuhn, E., Dekker, L. J. M., Stingl, C., Braakman, R. B. H., Opdam, M., Linn, S. C., Sweep, F. C. G. J., Span, P. N., Luider, T. M., Foekens, J. A., Martens, J. W. M., Carr, S. A. & Umar, A., 2016 apr 1, I : Journal of Proteome Research. 15, 4, s. 1230-42 13 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  24. Design of recombinant antibody microarrays for cell surface membrane proteomics

    Dexlin Mellby, L., Ingvarsson, J., Frendeus, B., Carl Borrebaeck & Christer Wingren, 2008, I : Journal of Proteome Research. 7, 1, s. 319-327

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  25. Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project

    Diez, P., Droste, C., Degano, R. M., Gonzalez-Munoz, M., Ibarrola, N., Perez-Andres, M., Garin-Muga, A., Segura, V., György Marko-Varga, LaBaer, J., Orfao, A., Corrales, F. J., De Las Rivas, J. & Fuentes, M., 2015, I : Journal of Proteome Research. 14, 9, s. 3530-3540

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  26. Discovery of a novel B-Raf fusion protein related to c-Met drug resistance

    Dillon, R., Carol L Nilsson, Shi, S. D-H., Lee, N. V., Krastins, B. & Greig, M. J., 2011 nov 4, I : Journal of Proteome Research. 10, 11, s. 5084-94 11 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  27. Genomics, transcriptomics, and peptidomics of Daphnia pulex neuropeptides and protein hormones

    Dircksen, H., Neupert, S., Predel, R., Verleyen, P., Huybrechts, J., Strauss, J., Hauser, F., Stafflinger, E., Schneider, M., Pauwels, K., Schoofs, L. & Grimmelikhuijzen, C. J. P., 2011 okt 7, I : Journal of Proteome Research. 10, 10, s. 4478-4504

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  28. In-Source Decay Causes Artifacts in SELDI-TOF MS Spectra.

    Lars Ekblad, Bo Baldetorp, Mårten Fernö, Håkan Olsson & Charlotte Welinder, 2007, I : Journal of Proteome Research. 6, 4, s. 1609-1614

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  29. Aqueous two-phase partitioning for proteomic monitoring of cell surface biomarkers in human peripheral blood mononuclear cells

    Everberg, H., Peterson Wulff, R., Rak, S., Folke Tjerneld & Cecilia Emanuelsson, 2006, I : Journal of Proteome Research. 5, 5, s. 1168-1175

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  30. Contribution of Antibody-based Protein Profiling to the Human Chromosome-centric Proteome Project (C-HPP)

    Fagerberg, L., Oksvold, P., Skogs, M., Algenas, C., Lundberg, E., Ponten, F., Sivertsson, A., Odeberg, J., Klevebring, D., Kampf, C., Asplund, A., Sjostedt, E., Szigyarto, C. A-K., Edqvist, P-H., Olsson, I., Rydberg, U., Hudson, P., Takanen, J. O., Berling, H., Bjorling, L. & 12 andraTegel, H., Rockberg, J., Nilsson, P., Navani, S., Karin Jirström, Mulder, J., Schwenk, J. M., Zwahlen, M., Hober, S., Forsberg, M., von Feilitzen, K. & Uhlen, M., 2013, I : Journal of Proteome Research. 12, 6, s. 2439-2448

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  31. Four Areas of Engagement Requiring Strengthening in Modern Proteomics Today.

    Fehniger, T., Boja, E. S., Rodriguez, H., Baker, M. S. & György Marko-Varga, 2014, I : Journal of Proteome Research. 13, 12, s. 5310-5318

    Forskningsoutput: TidskriftsbidragDebate/Note/Editorial

  32. Exploring the context of the lung proteome within the airway mucosa following allergen challenge.

    Fehniger, T. E., Sato-Folatre, J-G., Johan Malmström, Berglund, M., Lindberg, C., Brange, C., Lindberg, H. & Marko-Varga, G., 2004, I : Journal of Proteome Research. 3, 2, s. 307-320

    Forskningsoutput: TidskriftsbidragÖversiktsartikel

  33. Metabolomic and proteomic analysis of a clonal insulin-producing beta-cell line (INS-1 832/13).

    Celine Fernandez, Krus, U., Hallgard, E., Peter Spégel, Cecilia Holm, Krogh, M., Wårell, K., Peter James & Hindrik Mulder, 2008, I : Journal of Proteome Research. 7, 1, s. 400-411

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  34. Omics Analyses Reveal a Potential Link between Hormone-Sensitive Lipase and Polyamine Metabolism.

    Fernandez, C., Krogh, M., Wårell, K., Alm, K., Stina Oredsson, Lo Persson, Peter James & Cecilia Holm, 2009, I : Journal of Proteome Research. 8, s. 5008-5019

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  35. Integrated protein microchip assay with dual fluorescent- and MALDI read-out

    Finnskog, D., Ressine, A., Thomas Laurell & György Marko-Varga, 2004, I : Journal of Proteome Research. 3, 5, s. 988-994

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  36. Reproducibility of tryptic digestion investigated by quantitative fourier transform ion cyclotron resonance mass spectrometry

    Hagman, C., Ramstrom, M., Bentz, M., Peter James, Hakansson, P. & Bergquist, J., 2005, I : Journal of Proteome Research. 4, 2, s. 394-399

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  37. Structural analysis of 2D-gel-separated glycoproteins from human cerebrospinal fluid by tandem high-resolution mass spectrometry

    Håkansson, K., Emmett, M. R., Marshall, A. G., Davidsson, P. & Carol L Nilsson, 2003 dec 25, I : Journal of Proteome Research. 2, 6, s. 581-8 8 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  38. The Proteios Software Environment: an extensible multiuser platform for management and analysis of proteomics data

    Jari Häkkinen, Vincic, G., Månsson, O., Wårell, K. & Fredrik Levander, 2009, I : Journal of Proteome Research. 8, 6, s. 3037-3043

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  39. Inflammatory response in white adipose tissue in the non-obese hormone-sensitive lipase null mouse model.

    Ola Hansson, Ström, K., Güner, N., Nils Wierup, Sundler, F., Peter Höglund & Cecilia Holm, 2006, I : Journal of Proteome Research. 5, 7, s. 1701-1710

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  40. Glycomic and transcriptomic response of GSC11 glioblastoma stem cells to STAT3 phosphorylation inhibition and serum-induced differentiation

    He, H., Carol L Nilsson, Emmett, M. R., Marshall, A. G., Kroes, R. A., Moskal, J. R., Ji, Y., Colman, H., Priebe, W., Lang, F. & Conrad, C. A., 2010 maj 7, I : Journal of Proteome Research. 9, 5, s. 2098-2108 11 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  41. An Integrated Workflow for Multiplex CSF Proteomics and Peptidomics-Identification of Candidate Cerebrospinal Fluid Biomarkers of Alzheimer's Disease

    Holtta, M., Lennart Minthon, Oskar Hansson, Holmen-Larsson, J., Pike, I., Ward, M., Kuhn, K., Ruetschi, U., Zetterberg, H., Blennow, K. & Gobom, J., 2015, I : Journal of Proteome Research. 14, 2, s. 654-663

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  42. Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project

    Horvatovich, P., Lundberg, E., Chen, Y-J., Sung, T-Y., He, F., Nice, E., Goode, R., Yu, S., Ranganathan, S., Baker, M., Domont, R., Valesquez, E., Li, D., Liu, S., Wang, Q., He, Q-Y., Menon, R., Guan, Y., Corrales, F., Segura, V. & 33 andraCasal, I., Pascual-Montano, A., Albar, J. P., Fuentes, M., Gonzalez-Gonzalez, M., Diez, P., Ibarolla, N., Degano, R., Mohammed, Y., Borchers, C., Urbani, A., Soggiu, A., Yamamoto, T., Archakov, A., Ponomarenko, E., Lisitsa, A., Lichti, C., Mostovenko, E., Kroes, R., Melinda Rezeli, Végvári, Á., Fehniger, T., Bischoff, R., Vizcaíno, J. A., Deutsch, E., Lane, L., Nilsson, C., György Marko-Varga, Omenn, G., Jeong, S-K., Cho, J-Y., Paik, Y-K. & Hancock, W., 2015, I : Journal of Proteome Research. 14, 9, s. 3415-3431

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  43. In vitro Transcription/Translation System: A Versatile Tool in the Search for Missing Proteins

    Horvatovich, P., Végvári, Á., Saul, J., Park, J., Qiu, J., Syring, M., Pirrotte, P., Petritis, K., Tegeler, T., Aziz, M., Fuentes, M., Diez, P., Gonzalez-Gonzalez, M., Ibarrola, N., Droste, C., De Las Rivas, J., Gil, C., Clemente, F., Hernaez, M. L., Corrales, F. & 6 andraNilsson, C., Berven, F., Bischoff, R., Fehniger, T., LaBaer, J. & György Marko-Varga, 2015, I : Journal of Proteome Research. 14, 9, s. 3441-3451

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  44. Elucidating the Molecular Composition of Cartilage by Proteomics

    Hsueh, M. F., Khabut, A., Sven Kjellström, Patrik Önnerfjord & Kraus, V. B., 2016 feb 5, I : Journal of Proteome Research. 15, 2, s. 374-388 15 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  45. Design of recombinant antibody microarrays for serum protein profiling: Targeting of complement proteins

    Ingvarsson, J., Larsson, A., Sjöholm, A., Lennart Truedsson, Bo Jansson, Carl Borrebaeck & Christer Wingren, 2007, I : Journal of Proteome Research. 6, 9, s. 3527-3536

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  46. ENSAM: Europium Nanoparticles for Signal Enhancement of Antibody Microarrays on Nanoporous Silicon.

    Järås, K., Tajudin, A., Ressine, A., Soukka, T., György Marko-Varga, Anders Bjartell, Johan Malm, Thomas Laurell & Hans Lilja, 2008, I : Journal of Proteome Research. 7, s. 1308-1314

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  47. Aptamer microarray mediated capture and mass spectrometry identification of biomarker in serum samples.

    Ji-Young, A., Lee, S. W., Kang, H. S., Jo, M., Lee, D-K., Thomas Laurell & Kim, S., 2010, I : Journal of Proteome Research. 9, 11, s. 5568-5573

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  48. The protein expression of Streptococcus pyogenes is significantly influenced by human plasma.

    Johansson, B., Fredrik Levander, von Pawel-Rammingen, U., Berggård, T., Lars Björck & Peter James, 2005, I : Journal of Proteome Research. 4, 6, s. 2302-2311

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  49. Comparative Time-Dependent Analysis of Potential Inflammation Biomarkers in Lymphoma-Bearing SJL Mice.

    Monica Kåredal, Bhat, V., Babu, I., Wishnok, J. & Tannenbaum, S., 2007, I : Journal of Proteome Research. 6, 5, s. 1735-1744

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  50. Time-Dependent Proteomic iTRAQ Analysis of Nasal Lavage of Hairdressers Challenged by Persulfate.

    Monica Kåredal, Mörtstedt, H., Jeppsson, M., Diab, K., Jörn Nielsen, Jönsson, B. A. & Christian Lindh, 2010, I : Journal of Proteome Research. okt, s. 5620-5628

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  51. A Clinician View and Experience of Proteomic Studies in the Light of Lung Cancer in Japanese Healthcare

    Kato, H., Nishimura, T., Hirano, T., Nomura, M., Tojo, H., Fujii, K., Kawamura, T., Mikami, S., Kihara, M., Bando, Y., Tsuboi, M., Ikeda, N. & György Marko-Varga, 2011, I : Journal of Proteome Research. 10, 1, s. 51-57

    Forskningsoutput: TidskriftsbidragDebate/Note/Editorial

  52. FK506, an Immunosuppressive Drug, Induces Autophagy by Binding to the V-ATPase Catalytic Subunit A in Neuronal Cells

    Kim, D., Hwang, H. Y., Kim, Y. J., Lee, J. Y., Yoo, J. S., György Marko-Varga & Kwon, H. J., 2017 jan 6, I : Journal of Proteome Research. 16, 1, s. 55-64 10 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  53. Multimodel Pathway Enrichment Methods for Functional Evaluation of Expression Regulation.

    Kirik, U., Cifani, P., Albrekt, A-S., Malin Lindstedt, Anders Heyden & Fredrik Levander, 2012, I : Journal of Proteome Research. 11, 5, s. 2955-2967

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  54. A probabilistic treatment of the missing spot problem in 2D gel electrophoresis experiments

    Krogh, M., Celine Fernandez, Teilum, M., Bengtsson, S. & Peter James, 2007, I : Journal of Proteome Research. 6, 8, s. 3335-3343

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  55. Specific haptoglobin expression in bronchoalveolar lavage during differentiation of circulating fibroblast progenitor cells in mild asthma

    Larsen, K., Macleod, D., Nihlberg, K., Gürcan, E., Leif Bjermer, György Marko-Varga & Gunilla Westergren-Thorsson, 2006, I : Journal of Proteome Research. 5, 6, s. 1479-1483

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  56. Characterization of the Lipid Droplet Proteome of a Clonal Insulin-producing β-Cell Line (INS-1 832/13).

    Sara Larsson, Resjö, S., Maria Gomez, James, P. & Cecilia Holm, 2012, I : Journal of Proteome Research. 11, 2, s. 1264-1273

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  57. Integrated Chromosome 19 Transcriptomic and Proteomic Datasets Derived from Six Glioma-Derived Cancer Stem Cell Lines

    Lichti, C., Liu, H., Shavkunov, A. S., Mostovenko, E., Sulman, E. P., Ezhilarasan, R., Wang, Q., Kroes, R., Moskal, J. C., Fenyö, D., Oksuz, B. A., Conrad, C. A., Lang, F. F., Berven, F. S., Végvári, Á., Melinda Rezeli, György Marko-Varga, Hober, S. & Nilsson, C. L., 2014, I : Journal of Proteome Research. 13, 1, s. 191-199

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  58. Systematic Identification of Single Amino Acid Variants in Glioma Stem-Cell-Derived Chromosome 19 Proteins

    Lichti, C., Mostovenko, E., Wadsworth, P., Lynch, G., Pettitt, M., Sulman, E., Wang, Q., Lang, F., Melinda Rezeli, György Marko-Varga, Végvári, Á. & Nilsson, C., 2015, I : Journal of Proteome Research. 14, 2, s. 778-786

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  59. A modified database search strategy leads to improved identification of in vitro brominated peptides spiked into a complex proteomic sample

    Liu, H., Lichti, C. F., Mirfattah, B., Frahm, J. & Carol L Nilsson, 2013 sep 6, I : Journal of Proteome Research. 12, 9, s. 4248-54 7 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  60. Quantitative proteomic analysis of microdissected breast cancer tissues: comparison of label-free and SILAC-based quantification with shotgun, directed, and targeted MS approaches

    Liu, N. Q., Dekker, L. J. M., Stingl, C., Güzel, C., Tommaso De Marchi, Martens, J. W. M., Foekens, J. A., Luider, T. M. & Umar, A., 2013 okt 4, I : Journal of Proteome Research. 12, 10, s. 4627-41

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  61. Blood Plasma Reference Material – A Global Resource for Proteomic Research

    Johan Malm, Danmyr, P., Nilsson, R., Roger Appelqvist, Végvári, Á. & György Marko-Varga, 2013, I : Journal of Proteome Research. 12, 7, s. 3087-3092

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  62. Automated Workflow for Large-Scale Selected Reaction Monitoring Experiments

    Malmstrom, L., Johan Malmström, Selevsek, N., Rosenberger, G. & Aebersold, R., 2012, I : Journal of Proteome Research. 11, 3, s. 1644-1653

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  63. Proteomic 2DE database for spot selection, automated annotation, and data analysis

    Malmstrom, L., Johan Malmström, György Marko-Varga & Gunilla Westergren-Thorsson, 2002, I : Journal of Proteome Research. 1, 2, s. 135-138

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  64. Proteome annotations and identifications of the human pulmonary fibroblast.

    Johan Malmström, Larsen, K., Lars Malmström, Ellen Tufvesson, Parker, K., Marchese, J., Williamson, B., Hattan, S., Patterson, D., Martin, S., Graber, A., Juhasz, H. P., Gunilla Westergren-Thorsson & György Marko-Varga, 2004, I : Journal of Proteome Research. 3, 3, s. 525-537

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  65. Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis

    Johan Malmström, Lee, H., Nesvizhskii, A. I., Shteynberg, D., Mohanty, S., Brunner, E., Ye, M., Weber, G., Eckerskorn, C. & Aebersold, R., 2006 sep, I : Journal of Proteome Research. 5, 9, s. 2241-9 9 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  66. A First Step Toward Completion of a Genome-Wide Characterization of the Human Proteome.

    György Marko-Varga, Omenn, G. S., Paik, Y-K. & Hancock, W. S., 2013, I : Journal of Proteome Research. 12, 1, s. 1-5

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  67. Biorepository Regulatory Frameworks: Building Parallel Resources That Both Promote Scientific Investigation and Protect Human Subjects

    György Marko-Varga, Baker, M. S., Boja, E. S., Rodriguez, H. & Fehniger, T., 2014, I : Journal of Proteome Research. 13, 12, s. 5319-5324

    Forskningsoutput: TidskriftsbidragDebate/Note/Editorial

  68. Standardization and Utilization of Biobank Resources in Clinical Protein Sciene with Examples of Emerging Applications

    György Marko-Varga, Végvári, Á., Charlotte Welinder, Henrik Lindberg, Melinda Rezeli, Edula, G., Svensson, K., Mattias Belting, Thomas Laurell & Fehniger, T., 2012, I : Journal of Proteome Research. 11, 11, s. 5124-5134

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  69. Proteomics and disease - The challenges for technology and discovery

    György Marko-Varga & Fehniger, TE., 2004, I : Journal of Proteome Research. 3, 2, s. 167-178

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  70. Linking proteins to disease processes

    György Marko-Varga & Fehniger, T. E., 2004, I : Journal of Proteome Research. 3, 2, s. 155-155

    Forskningsoutput: TidskriftsbidragDebate/Note/Editorial

  71. Discovery of Biomarker Candidates within Disease by Protein Profiling: Principles and Concepts.

    György Marko-Varga, Lindberg, H., Claes-Göran Löfdahl, Jönsson, P., Hansson, L., Dahlbäck, M., Lindquist, E., Johansson, L., Foster, M. & Fehniger, T., 2005, I : Journal of Proteome Research. 4, 4, s. 1200-1212

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  72. The Immune System and the Proteome

    György Marko-Varga & LaBaer, J., 2017 jan 6, I : Journal of Proteome Research. 16, 1, s. 1 1 s.

    Forskningsoutput: TidskriftsbidragDebate/Note/Editorial

  73. Assessment of Peptide Chemical Modifications on the Development of an Accurate and Precise Multiplex Selected Reaction Monitoring Assay for Apolipoprotein E Isoforms

    Martinez-Morillo, E., Nielsen, H., Batruch, I., Drabovich, A. P., Begcevic, I., Lopez, M. F., Lennart Minthon, Bu, G., Mattsson, N., Portelius, E., Oskar Hansson & Diamandis, E. P., 2014, I : Journal of Proteome Research. 13, 2, s. 1077-1087

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  74. Targeted Proteomic Analyses of Nasal Lavage Fluid in Persulfate-Challenged Hairdressers with Bleaching Powder-Associated Rhinitis

    Mörtstedt, H., Neserin Ali, Monica Kåredal, Jacobsson, H., Emelie Rietz, Diab, K., Jörn Nielsen, Jönsson, B. A. & Christian Lindh, 2015, I : Journal of Proteome Research. 14, 2, s. 860-873

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  75. Screening Method Using Selected Reaction Monitoring for Targeted Proteomics Studies of Nasal Lavage Fluid.

    Mörtstedt, H., Monica Kåredal, Jönsson, B. A. & Christian Lindh, 2012, I : Journal of Proteome Research.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  76. Use of ENCODE Resources to Characterize Novel Proteoforms and Missing Proteins in the Human Proteome

    Nilsson, C., Mostovenko, E., Lichti, C., Ruggles, K., Fenyö, D., Rosenbloom, K., Hancock, W., Paik, Y-K., Omenn, G., LaBaer, J., Kroes, R., Uhlén, M., Hober, S., Végvári, Á., Andrén, P., Sulman, E., Lang, F., Fuentes, M., Carlsohn, E., Emmett, M. & 4 andraMoskal, J., Berven, F., Fehniger, T. & György Marko-Varga, 2015, I : Journal of Proteome Research. 14, 2, s. 603-608

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  77. Chromosome 19 Annotations with Disease Speciation - A First Report from the Global Research Consortium

    Nilsson, C. L., Berven, F., Selheim, F., Liu, H., Moskal, J. F., Kroes, R. A., Sulman, E. P., Conrad, C. A., Lang, F. F., Andrén, P. E., Nilsson, A., Carlsohn, E., Lilja, H., Malm, J., Fenyö, D., Subramaniyam, D., Wang, X., Gonzales-Gonzales, M., Dasilva, N., Diez, P. & 11 andraFuentes, M., Végvári, Á., Sjödin, K., Charlotte Welinder, Thomas Laurell, Fehniger, T., Henrik Lindberg, Melinda Rezeli, Edula, G., Hober, S. & György Marko-Varga, 2013, I : Journal of Proteome Research. 12, 1, s. 135-150

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  78. Quantitative phosphoproteomic analysis of the STAT3/IL-6/HIF1alpha signaling network: an initial study in GSC11 glioblastoma stem cells

    Carol L Nilsson, Dillon, R., Devakumar, A., Shi, S. D-H., Greig, M. J., Rogers, J. C., Krastins, B., Rosenblatt, M., Kilmer, G., Major, M., Kaboord, B. J., Sarracino, D., Rezai, T., Prakash, A., Lopez, M., Ji, Y., Priebe, W., Lang, F., Colman, H. & Conrad, C. A., 2010 jan, I : Journal of Proteome Research. 9, 1, s. 430-443 14 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  79. The Lecticans of Mammalian Brain Perineural Net Are O-Mannosylated

    Pacharra, S., Hanisch, F-G., Muehlenhoff, M., Faissner, A., Uwe Rauch & Breloy, I., 2013, I : Journal of Proteome Research. 12, 4, s. 1764-1771

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  80. Standard Guidelines for the Chromosome-Centric Human Proteome Project

    Paik, Y-K., Omenn, G. S., Uhlen, M., Hanash, S., Marko-Varga, G., Aebersold, R., Bairoch, A., Yamamoto, T., Legrain, P., Lee, H-J., Na, K., Jeong, S-K., He, F., Binz, P-A., Nishimura, T., Keown, P., Baker, M. S., Yoo, J. S., Garin, J., Archakov, A. & 3 andraBergeron, J., Salekdeh, G. H. & Hancock, W. S., 2012, I : Journal of Proteome Research. 11, 4, s. 2005-2013

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  81. Genome-wide Proteomics, Chromosome-centric Human Proteome Project (C-HPP), Part II

    Paik, Y-K., Omenn, G. S., Thongboonkerd, V., György Marko-Varga & Hancock, W. S., 2014, I : Journal of Proteome Research. 13, 1, s. 1-4

    Forskningsoutput: TidskriftsbidragDebate/Note/Editorial

  82. Protein Expression Profiling of Formalin-Fixed Paraffin-Embedded Tissue Using Recombinant Antibody Microarrays

    Pauly, F., Dexlin Mellby, L., Sara Ek, Mats Ohlin, Olsson, N., Karin Jirström, Michael Dictor, Schoenmakers, S., Carl Borrebaeck & Christer Wingren, 2013, I : Journal of Proteome Research. 12, 12, s. 5943-5953

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  83. Quantitative Proteomics Profiling of Primary Lung Adenocarcinoma Tumors Reveals Functional Perturbations in Tumor Metabolism

    Pernemalm, M., De Petris, L., Branca, R. M., Forshed, J., Kanter, L., Soria, J-C., Girard, P., Validire, P., Pawitan, Y., van den Oord, J., Lazar, V., Sven Påhlman, Lewensohn, R. & Lehtio, J., 2013, I : Journal of Proteome Research. 12, 9, s. 3934-3943

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  84. Identification of a Novel Autoimmune Peptide Epitope of Prostein in Prostate Cancer

    Pin, E., Henjes, F., Hong, M. G., Wiklund, F., Magnusson, P., Anders Bjartell, Uhlén, M., Nilsson, P. & Schwenk, J. M., 2017 jan 6, I : Journal of Proteome Research. 16, 1, s. 204-216 13 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  85. Proteomic investigation of glioblastoma cell lines treated with wild-type p53 and cytotoxic chemotherapy demonstrates an association between galectin-1 and p53 expression

    Puchades, M., Carol L Nilsson, Emmett, M. R., Aldape, K. D., Ji, Y., Lang, F., Liu, T-J. & Conrad, C. A., 2007 feb, I : Journal of Proteome Research. 6, 2, s. 869-75 7 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  86. Quantitative Label-Free Phosphoproteomics of Six Different Life Stages of the Late Blight Pathogen Phytophthora infestans Reveals Abundant Phosphorylation of Members of the CRN Effector Family

    Resjo, S., Ali, A., Meijer, H. J. G., Seidl, M. F., Snel, B., Sandin, M., Fredrik Levander, Govers, F. & Andreasson, E., 2014, I : Journal of Proteome Research. 13, 4, s. 1848-1859

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  87. Quantitation of 87 Proteins by nLC-MRM/MS in Human Plasma: Workflow for Large-Scale Analysis of Biobank Samples

    Melinda Rezeli, Sjödin, K., Henrik Lindberg, Olof Gidlöf, Lindahl, B., Jernberg, T., Spaak, J., David Erlinge & György Marko-Varga, 2017 sep 1, I : Journal of Proteome Research. 16, 9, s. 3242-3254 13 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  88. Expression of a Core 3 Disialyl-Le(x) Hexasaccharide in Human Colorectal Cancers: A Potential Marker of Malignant Transformation in Colon.

    Robbe-Masselot, C., Herrmann, A., Maes, E., Ingemar Carlstedt, Michalski, J-C. & Capon, C., 2009, I : Journal of Proteome Research.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  89. Determination of Phosphorylation Sites in the DivIVA Cytoskeletal Protein of Streptomyces coelicolor by Targeted LC-MS/MS

    Saalbach, G., Hempel, A. M., Vigouroux, M., Klas Flärdh, Buttner, M. J. & Naldrett, M. J., 2013, I : Journal of Proteome Research. 12, 9, s. 4187-4192

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  90. AFFIRM – a multiplexed immunoaffinity platform that combines recombinant antibody fragments and LC-SRM analysis

    Säll, A., Carlsson, F., Olsson, N., Christer Wingren, Mats Ohlin, Persson, H. & Sofia Waldemarson, 2014, I : Journal of Proteome Research. 13, 12, s. 5837-5847

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  91. Development of Phage-Based Antibody Fragment Reagents for Affinity Enrichment of Bacterial Immunoglobulin G Binding Proteins.

    Säll, A., Sjöholm, K., Waldemarson, S., Lotta Happonen, Christofer Karlsson, Persson, H. & Johan Malmström, 2015, I : Journal of Proteome Research. 14, 11, s. 4704-4713

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  92. 14-3-3 expression in denervated hippocampus after entorhinal cortex lesion assessed by culture-derived isotope tags in quantitative proteomics

    Sihlbom, C., Wilhelmsson, U., Li, L., Carol L Nilsson & Pekny, M., 2007 sep, I : Journal of Proteome Research. 6, 9, s. 3491-3500 10 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  93. Prefractionation of cerebrospinal fluid to enhance glycoprotein concentration prior to structural determination with FT-ICR mass spectrometry

    Sihlbom, C., Davidsson, P. & Carol L Nilsson, 2005 dec 13, I : Journal of Proteome Research. 4, 6, s. 2294-301 8 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

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