Journal of Proteome Research, 1535-3893

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  1. Mass Spectrometry Analysis of a Protein Kinase CK2 beta Subunit Interactome Isolated from Mouse Brain by Affinity Chromatography.

    Arrigoni, G., Pagano, M., Sarno, S., Cesaro, L., Peter James & Pinna, L., 2008, I : Journal of Proteome Research. 7, 3, s. 990-1000

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  2. Linking proteins to disease processes

    György Marko-Varga & Fehniger, T. E., 2004, I : Journal of Proteome Research. 3, 2, s. 155-155

    Forskningsoutput: TidskriftsbidragDebate/Note/Editorial

  3. Large-Scale Proteomics Analysis of Human Ovarian Cancer for Biomarkers

    Bengtsson, S., Krogh, M., Al-Khalili Szigyarto, C., Uhlen, M., Schedvins, K., Silfversward, C., Linder, S., Auer, G., Alaiya, A. & Peter James, 2007, I : Journal of Proteome Research. 6, 4, s. 1440-1450

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  4. In vitro Transcription/Translation System: A Versatile Tool in the Search for Missing Proteins

    Horvatovich, P., Végvári, Á., Saul, J., Park, J., Qiu, J., Syring, M., Pirrotte, P., Petritis, K., Tegeler, T., Aziz, M., Fuentes, M., Diez, P., Gonzalez-Gonzalez, M., Ibarrola, N., Droste, C., De Las Rivas, J., Gil, C., Clemente, F., Hernaez, M. L., Corrales, F. & 6 andra, Nilsson, C., Berven, F., Bischoff, R., Fehniger, T., LaBaer, J. & György Marko-Varga, 2015, I : Journal of Proteome Research. 14, 9, s. 3441-3451

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  5. Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project

    Diez, P., Droste, C., Degano, R. M., Gonzalez-Munoz, M., Ibarrola, N., Perez-Andres, M., Garin-Muga, A., Segura, V., György Marko-Varga, LaBaer, J., Orfao, A., Corrales, F. J., De Las Rivas, J. & Fuentes, M., 2015, I : Journal of Proteome Research. 14, 9, s. 3530-3540

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  6. Integrated Transcriptomic and Glycomic Profiling of Glioma Stem Cell Xenografts

    Wildburger, N. C., Zhou, S., Zacharias, L. G., Kroes, R. A., Moskal, J. R., Schmidt, M., Mirzaei, P., Gumin, J., Lang, F., Mechref, Y. & Carol Nilsson, 2015 sep 4, I : Journal of Proteome Research. 14, 9, s. 3932-9 8 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  7. Integrated protein microchip assay with dual fluorescent- and MALDI read-out

    Finnskog, D., Ressine, A., Thomas Laurell & György Marko-Varga, 2004, I : Journal of Proteome Research. 3, 5, s. 988-994

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  8. Integrated Chromosome 19 Transcriptomic and Proteomic Datasets Derived from Six Glioma-Derived Cancer Stem Cell Lines

    Lichti, C., Liu, H., Shavkunov, A. S., Mostovenko, E., Sulman, E. P., Ezhilarasan, R., Wang, Q., Kroes, R., Moskal, J. C., Fenyö, D., Oksuz, B. A., Conrad, C. A., Lang, F. F., Berven, F. S., Végvári, Á., Melinda Rezeli, György Marko-Varga, Hober, S. & Nilsson, C. L., 2014, I : Journal of Proteome Research. 13, 1, s. 191-199

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  9. In-Source Decay Causes Artifacts in SELDI-TOF MS Spectra.

    Lars Ekblad, Bo Baldetorp, Mårten Fernö, Håkan Olsson & Charlotte Welinder, 2007, I : Journal of Proteome Research. 6, 4, s. 1609-1614

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  10. Inflammatory response in white adipose tissue in the non-obese hormone-sensitive lipase null mouse model.

    Ola Hansson, Ström, K., Güner, N., Nils Wierup, Sundler, F., Höglund, P. & Cecilia Holm, 2006, I : Journal of Proteome Research. 5, 7, s. 1701-1710

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  11. Improvements in Mass Spectrometry Assay Library Generation for Targeted Proteomics

    Teleman, J., Hauri, S. & Johan Malmström, 2017 jul 7, I : Journal of Proteome Research. 16, 7, s. 2384-2392 9 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  12. Identification of a Novel Autoimmune Peptide Epitope of Prostein in Prostate Cancer

    Pin, E., Henjes, F., Hong, M. G., Wiklund, F., Magnusson, P., Anders Bjartell, Uhlén, M., Nilsson, P. & Schwenk, J. M., 2017 jan 6, I : Journal of Proteome Research. 16, 1, s. 204-216 13 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  13. Hypothermia Affects Translocation of Numerous Cytoplasmic Proteins Following Global Cerebral Ischemia.

    Teilum, M., Krogh, M., Tadeusz Wieloch & Gustav Mattiasson, 2007, I : Journal of Proteome Research. 6, 7, s. 2822-2832

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  14. Hunting for Protein Markers of Hypoxia by Combining Plasma Membrane Enrichment with a New Approach to Membrane Protein Analysis

    Cifani, P., Bendz, M., Wårell, K., Hansson, K. M., Fredrik Levander, Sandin, M., Krogh, M., Ovenberger, M., Fredlund, E., Marica Vaapil, Alexander Pietras, Sven Påhlman & Peter James, 2011, I : Journal of Proteome Research. 10, 4, s. 1645-1656

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  15. Glycomic and transcriptomic response of GSC11 glioblastoma stem cells to STAT3 phosphorylation inhibition and serum-induced differentiation

    He, H., Carol L Nilsson, Emmett, M. R., Marshall, A. G., Kroes, R. A., Moskal, J. R., Ji, Y., Colman, H., Priebe, W., Lang, F. & Conrad, C. A., 2010 maj 7, I : Journal of Proteome Research. 9, 5, s. 2098-2108 11 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  16. Genomics, transcriptomics, and peptidomics of Daphnia pulex neuropeptides and protein hormones

    Dircksen, H., Neupert, S., Predel, R., Verleyen, P., Huybrechts, J., Strauss, J., Hauser, F., Stafflinger, E., Schneider, M., Pauwels, K., Schoofs, L. & Grimmelikhuijzen, C. J. P., 2011 okt 7, I : Journal of Proteome Research. 10, 10, s. 4478-4504

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  17. Genome-wide Proteomics, Chromosome-centric Human Proteome Project (C-HPP), Part II

    Paik, Y-K., Omenn, G. S., Thongboonkerd, V., György Marko-Varga & Hancock, W. S., 2014, I : Journal of Proteome Research. 13, 1, s. 1-4

    Forskningsoutput: TidskriftsbidragDebate/Note/Editorial

  18. Four Areas of Engagement Requiring Strengthening in Modern Proteomics Today.

    Fehniger, T., Boja, E. S., Rodriguez, H., Baker, M. S. & György Marko-Varga, 2014, I : Journal of Proteome Research. 13, 12, s. 5310-5318

    Forskningsoutput: TidskriftsbidragDebate/Note/Editorial

  19. FK506, an Immunosuppressive Drug, Induces Autophagy by Binding to the V-ATPase Catalytic Subunit A in Neuronal Cells

    Kim, D., Hwang, H. Y., Kim, Y. J., Lee, J. Y., Yoo, J. S., György Marko-Varga & Kwon, H. J., 2017 jan 6, I : Journal of Proteome Research. 16, 1, s. 55-64 10 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  20. Feasibility Study on Measuring Selected Proteins in Malignant Melanoma Tissue by SRM Quantification.

    Charlotte Welinder, Göran B Jönsson, Christian Ingvar, Lundgren, L., Bo Baldetorp, Håkan Olsson, Breslin, T., Rezeli, M., Bo Jansson, Thomas Laurell, Fehniger, T. E., Elisabet Wieslander, Krzysztof Pawlowski & Marko-Varga, G., 2014, I : Journal of Proteome Research. 13, 3, s. 1315-1326

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  21. Expression of a Core 3 Disialyl-Le(x) Hexasaccharide in Human Colorectal Cancers: A Potential Marker of Malignant Transformation in Colon.

    Robbe-Masselot, C., Herrmann, A., Maes, E., Ingemar Carlstedt, Michalski, J-C. & Capon, C., 2009, I : Journal of Proteome Research.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  22. Exploring the context of the lung proteome within the airway mucosa following allergen challenge.

    Fehniger, T. E., Sato-Folatre, J-G., Johan Malmström, Berglund, M., Lindberg, C., Brange, C., Lindberg, H. & Marko-Varga, G., 2004, I : Journal of Proteome Research. 3, 2, s. 307-320

    Forskningsoutput: TidskriftsbidragÖversiktsartikel

  23. Experimental Models to Study Drug Distributions in Tissue Using MALDI Mass Spectrometry

    Végvári, Á., Fehniger, T. E., Melinda Rezeli, Thomas Laurell, Döme, B., Jansson, B., Charlotte Welinder & György Marko-Varga, 2013, I : Journal of Proteome Research. 12, 12, s. 5626-5633

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  24. ESI-MS/MS and MALDI-IMS Localization Reveal Alterations in Phosphatidic Acid, Diacylglycerol, and DHA in Glioma Stem Cell Xenografts

    Wildburger, N. C., Wood, P. L., Gumin, J., Lichti, C. F., Emmett, M. R., Lang, F. & Carol L Nilsson, 2015 jun 5, I : Journal of Proteome Research. 14, 6, s. 2511-9 9 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  25. ENSAM: Europium Nanoparticles for Signal Enhancement of Antibody Microarrays on Nanoporous Silicon.

    Järås, K., Tajudin, A., Ressine, A., Soukka, T., György Marko-Varga, Anders Bjartell, Johan Malm, Thomas Laurell & Hans Lilja, 2008, I : Journal of Proteome Research. 7, s. 1308-1314

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  26. Elucidating the Molecular Composition of Cartilage by Proteomics

    Hsueh, M. F., Khabut, A., Sven Kjellström, Patrik Önnerfjord & Kraus, V. B., 2016 feb 5, I : Journal of Proteome Research. 15, 2, s. 374-388 15 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  27. Discovery of Biomarker Candidates within Disease by Protein Profiling: Principles and Concepts.

    György Marko-Varga, Lindberg, H., Claes-Göran Löfdahl, Jönsson, P., Hansson, L., Dahlbäck, M., Lindquist, E., Johansson, L., Foster, M. & Fehniger, T., 2005, I : Journal of Proteome Research. 4, 4, s. 1200-1212

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  28. Discovery of a novel B-Raf fusion protein related to c-Met drug resistance

    Dillon, R., Carol L Nilsson, Shi, S. D-H., Lee, N. V., Krastins, B. & Greig, M. J., 2011 nov 4, I : Journal of Proteome Research. 10, 11, s. 5084-94 11 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  29. Dinosaur: A Refined Open-Source Peptide MS Feature Detector

    Teleman, J., Chawade, A., Sandin, M., Fredrik Levander & Johan Malmström, 2016 jul 1, I : Journal of Proteome Research. 15, 7, s. 2143-2151 9 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  30. Development of reagents for differential protein quantitation by subtractive parent (precursor) ion scanning

    Wåhlander, Å., Arrigoni, G., Wårell, K., Fredrik Levander, Palmgren, R., Maloisel, J-L., Busson, P. & Peter James, 2007, I : Journal of Proteome Research. 6, 3, s. 1101-1113

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  31. Development of Phage-Based Antibody Fragment Reagents for Affinity Enrichment of Bacterial Immunoglobulin G Binding Proteins.

    Säll, A., Sjöholm, K., Waldemarson, S., Lotta Happonen, Christofer Karlsson, Persson, H. & Johan Malmström, 2015, I : Journal of Proteome Research. 14, 11, s. 4704-4713

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  32. Determination of Phosphorylation Sites in the DivIVA Cytoskeletal Protein of Streptomyces coelicolor by Targeted LC-MS/MS

    Saalbach, G., Hempel, A. M., Vigouroux, M., Klas Flärdh, Buttner, M. J. & Naldrett, M. J., 2013, I : Journal of Proteome Research. 12, 9, s. 4187-4192

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  33. Detection and identification of protein isoforms using cluster analysis of MALDI-MS mass spectra

    Alm, R., Johansson, P., Hjerno, K., Cecilia Emanuelsson, Markus Ringnér & Jari Häkkinen, 2006, I : Journal of Proteome Research. 5, 4, s. 785-792

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  34. Design of recombinant antibody microarrays for serum protein profiling: Targeting of complement proteins

    Ingvarsson, J., Larsson, A., Sjöholm, A., Lennart Truedsson, Bo Jansson, Carl Borrebaeck & Christer Wingren, 2007, I : Journal of Proteome Research. 6, 9, s. 3527-3536

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  35. Design of recombinant antibody microarrays for cell surface membrane proteomics

    Dexlin Mellby, L., Ingvarsson, J., Frendeus, B., Carl Borrebaeck & Christer Wingren, 2008, I : Journal of Proteome Research. 7, 1, s. 319-327

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  36. Data Processing Has Major Impact on the Outcome of Quantitative Label-Free LC-MS Analysis

    Chawade, A., Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2015, I : Journal of Proteome Research. 14, 2, s. 676-687

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  37. Critical Comparison of Multidimensional Separation Methods for Increasing Protein Expression Coverage

    Antberg, L., Cifani, P., Sandin, M., Fredrik Levander & Peter James, 2012, I : Journal of Proteome Research. 11, 5, s. 2644-2652

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  38. Coomassie Staining as Loading Control in Western Blot Analysis

    Charlotte Welinder & Lars Ekblad, 2011, I : Journal of Proteome Research. 10, 3, s. 1416-1419

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  39. Contribution of Antibody-based Protein Profiling to the Human Chromosome-centric Proteome Project (C-HPP)

    Fagerberg, L., Oksvold, P., Skogs, M., Algenas, C., Lundberg, E., Ponten, F., Sivertsson, A., Odeberg, J., Klevebring, D., Kampf, C., Asplund, A., Sjostedt, E., Szigyarto, C. A-K., Edqvist, P-H., Olsson, I., Rydberg, U., Hudson, P., Takanen, J. O., Berling, H., Bjorling, L. & 12 andra, Tegel, H., Rockberg, J., Nilsson, P., Navani, S., Karin Jirström, Mulder, J., Schwenk, J. M., Zwahlen, M., Hober, S., Forsberg, M., von Feilitzen, K. & Uhlen, M., 2013, I : Journal of Proteome Research. 12, 6, s. 2439-2448

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  40. Confirmation of Protein Biomarkers of Corticosteroids Treatment in Veal Calves Sampled under Field Conditions

    Stella, R., Arrigoni, G., Biancotto, G., Krogh, M., Vascellari, M., Lega, F., Pozza, G., Angeletti, R., Andrighetto, I. & Peter James, 2014, I : Journal of Proteome Research. 13, 4, s. 1794-1799

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  41. Comprehensive Mass Spectrometric Survey of Streptococcus pyogenes Subcellular Proteomes

    Wilk, L., Lotta Happonen, Johan Malmström & Heiko Herwald, 2018 jan 5, I : Journal of Proteome Research. 17, 1, s. 600-617

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  42. Comparison of MS/MS methods for protein identification from 2D-PAGE

    Arrigoni, G., Celine Fernandez, Cecilia Holm, Scigelova, M. & Peter James, 2006, I : Journal of Proteome Research. 5, 9, s. 2294-2300

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  43. Comparative Time-Dependent Analysis of Potential Inflammation Biomarkers in Lymphoma-Bearing SJL Mice.

    Monica Kåredal, Bhat, V., Babu, I., Wishnok, J. & Tannenbaum, S., 2007, I : Journal of Proteome Research. 6, 5, s. 1735-1744

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  44. Chromosome 19 Annotations with Disease Speciation - A First Report from the Global Research Consortium

    Nilsson, C. L., Berven, F., Selheim, F., Liu, H., Moskal, J. F., Kroes, R. A., Sulman, E. P., Conrad, C. A., Lang, F. F., Andrén, P. E., Nilsson, A., Carlsohn, E., Lilja, H., Malm, J., Fenyö, D., Subramaniyam, D., Wang, X., Gonzales-Gonzales, M., Dasilva, N., Diez, P. & 11 andra, Fuentes, M., Végvári, Á., Sjödin, K., Charlotte Welinder, Thomas Laurell, Fehniger, T., Henrik Lindberg, Melinda Rezeli, Edula, G., Hober, S. & György Marko-Varga, 2013, I : Journal of Proteome Research. 12, 1, s. 135-150

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  45. Characterization of the outer membrane protein profile from disease-related Helicobacter pylori isolates by subcellular fractionation and nano-LC FT-ICR MS analysis

    Carlsohn, E., Nyström, J., Karlsson, H., Svennerholm, A-M. & Carol L Nilsson, 2006 nov, I : Journal of Proteome Research. 5, 11, s. 3197-204 8 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  46. Characterization of the Lipid Droplet Proteome of a Clonal Insulin-producing β-Cell Line (INS-1 832/13).

    Sara Larsson, Resjö, S., Maria Gomez, James, P. & Cecilia Holm, 2012, I : Journal of Proteome Research. 11, 2, s. 1264-1273

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  47. Blood Plasma Reference Material – A Global Resource for Proteomic Research

    Johan Malm, Danmyr, P., Nilsson, R., Roger Appelqvist, Végvári, Á. & György Marko-Varga, 2013, I : Journal of Proteome Research. 12, 7, s. 3087-3092

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  48. Blood Metabolic Signatures of Body Mass Index: A Targeted Metabolomics Study in the EPIC Cohort

    Carayol, M., Leitzmann, M. F., Ferrari, P., Zamora-Ros, R., Achaintre, D., Stepien, M., Schmidt, J. A., Travis, R. C., Overvad, K., Tjønneland, A., Hansen, L., Kaaks, R., Kühn, T., Boeing, H., Bachlechner, U., Trichopoulou, A., Bamia, C., Palli, D., Agnoli, C., Tumino, R. & 18 andra, Vineis, P., Panico, S., Quirós, J. R., Sánchez-Cantalejo, E., Huerta, J. M., Ardanaz, E., Arriola, L., Agudo, A., Nilsson, J., Olle Melander, Bueno de Mesquita, B., Peeters, P. H., Wareham, N., Khaw, K-T., Jenab, M., Key, T. J., Scalbert, A. & Rinaldi, S., 2017 sep 1, I : Journal of Proteome Research. 16, 9, s. 3137-3146 10 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  49. Biorepository Regulatory Frameworks: Building Parallel Resources That Both Promote Scientific Investigation and Protect Human Subjects

    György Marko-Varga, Baker, M. S., Boja, E. S., Rodriguez, H. & Fehniger, T., 2014, I : Journal of Proteome Research. 13, 12, s. 5319-5324

    Forskningsoutput: TidskriftsbidragDebate/Note/Editorial