Nucleic Acids Research, 1362-4962

Tidskrift

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  1. 2020
  2. The human methyltransferase ZCCHC4 catalyses N6-methyladenosine modification of 28S ribosomal RNA

    Pinto, R., Vågbø, C. B., Magnus E Jakobsson, Kim, Y., Baltissen, M. P., O'Donohue, M-F., Guzmán, U. H., Małecki, J. M., Wu, J., Kirpekar, F., Olsen, J. V., Gleizes, P-E., Vermeulen, M., Leidel, S. A., Slupphaug, G. & Falnes, P. Ø., 2020 jan 24, I : Nucleic Acids Research. 48, 2, s. 830-846 17 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  3. OGRDB: a reference database of inferred immune receptor genes

    Lees, W., Busse, C. E., Corcoran, M., Mats Ohlin, Scheepers, C., Matsen, F. A., Yaari, G., Watson, C. T., Collins, A., Shepherd, A. J. & AIRR Community, 2020, I : Nucleic Acids Research. 48, D1, s. D964-D970

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  4. 2019
  5. Enzyme-free optical DNA mapping of the human genome using competitive binding

    Müller, V., Albertas Dvirnas, Andersson, J., Singh, V., Kk, S., Johansson, P., Ebenstein, Y., Tobias Ambjörnsson & Westerlund, F., 2019 sep 5, I : Nucleic Acids Research. 47, 15, e89.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  6. 2018
  7. MutT homologue 1 (MTH1) catalyzes the hydrolysis of mutagenic O6-methyl-dGTP

    Jemth, A-S., Gustafsson, R., Bräutigam, L., Henriksson, L., Vallin, K. S. A., Sarno, A., Almlöf, I., Homan, E., Rasti, A., Warpman Berglund, U., Pål Stenmark & Helleday, T., 2018 nov 16, I : Nucleic Acids Research. 46, 20, s. 10888-10904

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  8. Mu transpososome activity-profiling yields hyperactive MuA variants for highly efficient genetic and genome engineering

    Rasila, T. S., Pulkkinen, E., Kiljunen, S., Haapa-Paananen, S., Pajunen, M. I., Salminen, A., Paulin, L., Mauno Vihinen, Rice, P. A. & Savilahti, H., 2018 maj 18, I : Nucleic Acids Research. 46, 9, s. 4649-4661 13 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  9. The DNA damage response activates HPV16 late gene expression at the level of RNA processing

    Nilsson, K., Chengjun Wu, Naoko Kajitani, Yu, H., Tsimtsirakis, E., Gong, L., Winquist, E. B., Glahder, J., Lars Ekblad, Johan Wennerberg & Stefan Schwartz, 2018 jan 1, I : Nucleic Acids Research. 46, 10, s. 5029-5049

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  10. 2017
  11. hnRNP L controls HPV16 RNA polyadenylation and splicing in an Akt kinase-dependent manner

    Naoko Kajitani, Glahder, J., Wu, C., Yu, H., Nilsson, K. & Stefan Schwartz, 2017 sep 19, I : Nucleic Acids Research. 45, 16, s. 9654-9678 25 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  12. Methylation of human eukaryotic elongation factor alpha (eEF1A) by a member of a novel protein lysine methyltransferase family modulates mRNA translation

    Magnus E Jakobsson, Malecki, J., Nilges, B. S., Moen, A., Leidel, S. A. & Falnes, P. Ø., 2017 aug 21, I : Nucleic Acids Research. 45, 14, s. 8239-8254 16 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  13. The novel lysine specific methyltransferase METTL21B affects mRNA translation through inducible and dynamic methylation of Lys-165 in human eukaryotic elongation factor 1 alpha (eEF1A)

    Malecki, J., Aileni, V. K., Ho, A. Y. Y., Schwarz, J., Moen, A., Sørensen, V., Nilges, B. S., Magnus E Jakobsson, Leidel, S. A. & Falnes, P. Ø., 2017 maj 5, I : Nucleic Acids Research. 45, 8, s. 4370-4389 20 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  14. Expanded national database collection and data coverage in the FINDbase worldwide database for clinically relevant genomic variation allele frequencies

    Viennas, E., Komianou, A., Mizzi, C., Stojiljkovic, M., Mitropoulou, C., Muilu, J., Mauno Vihinen, Grypioti, P., Papadaki, S., Pavlidis, C., Zukic, B., Katsila, T., Van Der Spek, P. J., Pavlovic, S., Tzimas, G. & Patrinos, G. P., 2017 jan 1, I : Nucleic Acids Research. 45, D1, s. D846-D853

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  15. 2016
  16. A quantitative proteomics approach identifies ETV6 and IKZF1 as new regulators of an ERG-driven transcriptional network

    Unnikrishnan, A., Guan, Y. F., Huang, Y., Beck, D., Thoms, J. A. I., Peirs, S., Knezevic, K., Ma, S., de Walle, I. V., Ineke de Jong, Ali, Z., Zhong, L., Raftery, M. J., Taghon, T., Jonas Larsson, MacKenzie, K. L., Van Vlierberghe, P., Wong, J. W. H. & Pimanda, J. E., 2016 dec 15, I : Nucleic Acids Research. 44, 22, s. 10644-10661

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  17. PON-mt-tRNA: a multifactorial probability-based method for classification of mitochondrial tRNA variations.

    Abhishek Niroula & Mauno Vihinen, 2016, I : Nucleic Acids Research. 44, 5, s. 2020-2027

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  18. 2015
  19. Bacteriophage strain typing by rapid single molecule analysis.

    Grunwald, A., Dahan, M., Giesbertz, A., Adam Nilsson, Nyberg, L. K., Weinhold, E., Tobias Ambjörnsson, Westerlund, F. & Ebenstein, Y., 2015, I : Nucleic Acids Research. 43, 18, s. e117

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  20. Ionic switch controls the DNA state in phage λ.

    Li, D., Liu, T., Zuo, X., Li, T., Qiu, X. & Alex Evilevitch, 2015, I : Nucleic Acids Research. 43, 13, s. 6348-6358

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  21. The Biobanking Analysis Resource Catalogue (BARCdb): a new research tool for the analysis of biobank samples.

    Galli, J., Oelrich, J., Taussig, M. J., Ulrika Andreasson, Eva Ortega-Paino & Landegren, U., 2015, I : Nucleic Acids Research. 43, D1, s. D1158-D1162

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  22. 2014
  23. Quantification of DNA-associated proteins inside eukaryotic cells using single-molecule localization microscopy

    Etheridge, T. J., Boulineau, R. L., Herbert, A., Watson, A. T., Daigaku, Y., Tucker, J., George, S., Peter Jönsson, Palayret, M., Lando, D., Laue, E., Osborne, M. A., Klenerman, D., Lee, S. F. & Carr, A. M., 2014 okt 29, I : Nucleic Acids Research. 42, 19, s. e146

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  24. Competitive binding-based optical DNA mapping for fast identification of bacteria - multi-ligand transfer matrix theory and experimental applications on Escherichia coli.

    Adam Nilsson, Emilsson, G., Nyberg, L. K., Noble, C., Svensson Stadler, L., Fritzsche, J., Moore, E. R. B., Jonas Tegenfeldt, Tobias Ambjörnsson & Westerlund, F., 2014, I : Nucleic Acids Research. 42, 15, s. e118

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  25. Major capsid reinforcement by a minor protein in herpesviruses and phage.

    Sae-Ueng, U., Liu, T., Catalano, C. E., Huffman, J. B., Homa, F. L. & Alex Evilevitch, 2014, I : Nucleic Acids Research. 42, 14, s. 9096-9107

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  26. Nova1 is a master regulator of alternative splicing in pancreatic beta cells.

    Villate, O., Turatsinze, J-V., Mascali, L. G., Grieco, F. A., Nogueira, T. C., Cunha, D. A., Nardelli, T. R., Sammeth, M., Salunkhe, V. A., Jonathan Esguerra, Lena Eliasson, Marselli, L., Marchetti, P. & Eizirik, D. L., 2014, I : Nucleic Acids Research. 42, 18, s. 11818-11830

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  27. REST mediates androgen receptor actions on gene repression and predicts early recurrence of prostate cancer.

    Svensson, C., Jens Ceder, Iglesias-Gato, D., Chuan, Y-C., Pang, S. T., Anders Bjartell, Martinez, R. M., Bott, L., Helczynski, L., David Ulmert, Wang, Y., Niu, Y., Collins, C. & Flores-Morales, A., 2014, I : Nucleic Acids Research. 42, 2, s. 999-1015

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  28. 2013
  29. miR-23b regulates cytoskeletal remodeling, motility and metastasis by directly targeting multiple transcripts

    Pellegrino, L., Stebbing, J., Braga, V. M., Frampton, A. E., Jacob, J., Buluwela, L., Jiao, L. R., Periyasamy, M., Chris D Madsen, Caley, M. P., Ottaviani, S., Roca-Alonso, L., El-Bahrawy, M., Coombes, R. C., Krell, J. & Castellano, L., 2013 maj 1, I : Nucleic Acids Research. 41, 10, s. 5400-12 13 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  30. DNA bending-induced phase transition of encapsidated genome in phage λ

    Lander, G. C., Johnson, J. E., Rau, D. C., Potter, C. S., Carragher, B. & Alex Evilevitch, 2013, I : Nucleic Acids Research. 41, 8, s. 4518

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  31. HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis.

    Bagger, F. O., Rapin, N., Theilgaard-Moench, K., Kaczkowski, B., Thorén, L., Jendholm, J., Winther, O. & Porse, B. T., 2013, I : Nucleic Acids Research. 41, D1, s. D1034-D1039

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  32. PlantLoc: an accurate web server for predicting plant protein subcellular localization by substantiality motif.

    Tang, S., Li, T., Cong, P., Xiong, W., Wang, Z. & Jiangming Sun, 2013, I : Nucleic Acids Research. 41, W1, s. W441-W447

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  33. Suppression of HPV-16 late L1 5'-splice site SD3632 by binding of hnRNP D proteins and hnRNP A2/B1 to upstream AUAGUA RNA motifs.

    Li, X., Johansson, C., Glahder, J., Mossberg, A. & Stefan Schwartz, 2013, I : Nucleic Acids Research. 41, 22, s. 10488-10508

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  34. 2012
  35. HapZipper: sharing HapMap populations just got easier

    Chanda, P., Eran Elhaik & Bader, J. S., 2012 nov 1, I : Nucleic Acids Research. 40, 20, 7 s., e159.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  36. Structure of the bifunctional methyltransferase YcbY (RlmKL) that adds the m7G2069 and m2G2445 modifications in Escherichia coli 23S rRNA

    Wang, K-T., Desmolaize, B., Jie Nan, Zhang, X-W., Li, L-F., Douthwaite, S. & Su, X-D., 2012 jun, I : Nucleic Acids Research. 40, 11, s. 5138-48 11 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  37. Telomerase-dependent generation of 70-nt-long telomeric single-stranded 3' overhangs in yeast

    Fridholm, H., Astromskas, E. & Marita Cohn, 2012, I : Nucleic Acids Research.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  38. 2010
  39. Identifying compositionally homogeneous and nonhomogeneous domains within the human genome using a novel segmentation algorithm

    Eran Elhaik, Graur, D., Josić, K. & Landan, G., 2010 aug, I : Nucleic Acids Research. 38, 15, 9 s., e158.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  40. 2009
  41. Kinetic and thermodynamic characterization of single-mismatch discrimination using single-molecule imaging

    Gunnarsson, A., Peter Jönsson, Zhdanov, V. P. & Höök, F., 2009 aug, I : Nucleic Acids Research. 37, 14, s. e99

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  42. SuperScent--a database of flavors and scents

    Dunkel, M., Schmidt, U., Struck, S., Berger, L., Gruening, B., Hossbach, J., Jaeger, I. S., Effmert, U., Piechulla, B., Eriksson, R., Knudsen, J. & Preissner, R., 2009, I : Nucleic Acids Research. 37, s. D291-D294

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  43. Tissue-specific regulatory network extractor (TS-REX): a database and software resource for the tissue and cell type-specific investigation of transcription factor-gene networks.

    Colecchia, F., Kottwitz, D., Wagner, M., Pfenninger, C., Thiel, G., Tamm, I., Peterson, C. & Nuber, U., 2009, I : Nucleic Acids Research. 37, 11, s. e82

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  44. 2007
  45. Conserved nucleotides in an RNA essential for hepatitis B virus replication show distinct mobility patterns.

    Petzold, K., Duchardt, E., Flodell, S., Larsson, G., Kidd-Ljunggren, K., Wijmenga, S. & Schleucher, J., 2007, I : Nucleic Acids Research. 35, 20, s. 6854-6861

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  46. DNA binding mechanism revealed by high resolution crystal structure of Arabidopsis thaliana WRKY1 protein

    Duan, M-R., Jie Nan, Liang, Y-H., Mao, P., Lu, L., Li, L., Wei, C., Lai, L., Li, Y. & Su, X-D., 2007, I : Nucleic Acids Research. 35, 4, s. 1145-54 10 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  47. High-precision mapping of protein protein interfaces: an integrated genetic strategy combining en masse mutagenesis and DNA-level parallel analysis on a yeast two-hybrid platform.

    Pajunen, M., Turakainen, H., Poussu, E., Peränen, J., Mauno Vihinen & Savilahti, H., 2007, I : Nucleic Acids Research. 35, 16, s. e103

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  48. 2006
  49. Solution structure of the apical stem-loop of the human hepatitis B virus encapsidation signal

    Flodell, S., Petersen, M., Girard, F., Zdunek, J., Kidd-Ljunggren, K., Schleucher, J. & Wijmenga, S., 2006, I : Nucleic Acids Research. 34, 16, s. 4449-4457

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  50. 2005
  51. Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

    Karp, P., Ouzounis, C., Moore-Kochlacs, C., Goldovsky, L., Kaipa, P., Dag Ahrén, Tsoka, S., Darzentas, N., Kunin, V. & López-Bigas, N., 2005, I : Nucleic Acids Research. 33, 19, s. 6083-6089

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  52. Genome-wide selection of unique and valid oligonucleotides.

    Hyyrö, H., Juhola, M. & Mauno Vihinen, 2005, I : Nucleic Acids Research. 33, 13, s. e115

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  53. Measuring genome conservation across taxa: divided strains and united kingdoms

    Kunin, V., Dag Ahrén, Goldovsky, L., Janssen, P. & Ouzounis, C. A., 2005, I : Nucleic Acids Research. 33, 2, s. 616-621

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  54. 2004
  55. Human protein reference database as a discovery resource for proteomics

    Peri, S., Navarro, J. D., Kristiansen, T. Z., Amanchy, R., Surendranath, V., Muthusamy, B., Gandhi, T. K. B., Chandrika, K. N., Deshpande, N., Suresh, S., Rashmi, B. P., Shanker, K., Padma, N., Niranjan, V., Harsha, H. C., Talreja, N., Vrushabendra, B. M., Ramya, M. A., Yatish, A. J., Joy, M. & 13 andra, Shivashankar, H. N., Kavitha, M. P., Menezes, M., Choudhury, D. R., Ghosh, N., Saravana, R., Chandran, S., Mohan, S. S., Jonnalagadda, C. K., Prasad, C. K., Kumar-Sinha, C., Deshpande, K. S. & Pandey, A., 2004 jan 1, I : Nucleic Acids Research. 32, Database issue, s. D497-501

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  56. A codon window in mRNA downstream of the initiation codon where NGG codons give strongly reduced gene expression in Escherichia coli

    Ernesto I Gonzalez de Valdivia & Isaksson, L. A., 2004, I : Nucleic Acids Research. 32, 17, s. 5198-205 8 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  57. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences

    Laslett, D. & Björn Canbäck, 2004, I : Nucleic Acids Research. 32, 1, s. 11-16

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  58. Two-dimensional conformation-dependent electrophoresis (2D-CDE) to separate DNA fragments containing unmatched bulge from complex DNA samples

    Gunnarsson, G. H., Thormar, H. G., Gudmundsson, B., Åkesson, L. & Jonsson, J. J., 2004, I : Nucleic Acids Research. 32, 2, s. 23

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  59. 2003
  60. Mosquito has a single multisubstrate deoxyribonucleoside kinase characterized by unique substrate specificity

    Wolfgang Knecht, Petersen, G. E., Sandrini, M. P. B., Søndergaard, L., Munch-Petersen, B. & Piskur, J., 2003 mar 15, I : Nucleic Acids Research. 31, 6, s. 1665-1672

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  61. 2002
  62. 23S rRNA assisted folding of cytoplasmic malate dehydrogenase is distinctly different from its self-folding

    Sanyal, S., Pal, S., Chaudhuri, S. & DasGupta, C., 2002, I : Nucleic Acids Research. 30, 11, s. 2390-2397

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  63. IDR: the ImmunoDeficiency Resource.

    Väliaho, J., Pusa, M., Ylinen, T. & Mauno Vihinen, 2002, I : Nucleic Acids Research. 30, 1, s. 232-234

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  64. The apical stem-loop of the hepatitis B virus encapsidation signal folds into a stable tri-loop with two underlying pyrimidine bulges

    Flodell, S., Schleucher, J., Cromsigt, J., Ippel, H., Kidd-Ljunggren, K. & Wijmenga, S., 2002, I : Nucleic Acids Research. 30, 21, s. 4803-4811

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  65. 2001
  66. Detection of mitochondrial single nucleotide polymorphisms using a primer elongation reaction on oligonucleotide microarrays

    Erdogan, F., Kirchner, R., Mann, W., Ropers, H-H. & Nuber, U., 2001, I : Nucleic Acids Research. 29, 7, s. 36

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

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