Nucleic Acids Research, 1362-4962

Tidskrift

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  1. 2021
  2. Photorhabdus antibacterial Rhs polymorphic toxin inhibits translation through ADP-ribosylation of 23S ribosomal RNA

    Dukas Jurėnas, Amaury Payelleville, Mohammad Roghanian, Kathryn J Turnbull, Alain Givaudan, Julien Brillard, Vasili Hauryliuk & Eric Cascales, 2021 jul 13, I: Nucleic Acids Research.

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  3. RqcH and RqcP catalyze processive poly-alanine synthesis in a reconstituted ribosome-associated quality control system

    Hiraku Takada, Caillan Crowe-McAuliffe, Christine Polte, Zhanna Yu Sidorova, Victoriia Murina, Gemma C Atkinson, Andrey L Konevega, Zoya Ignatova, Daniel N Wilson & Vasili Hauryliuk, 2021 jul 13, I: Nucleic Acids Research. gkab589.

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  4. Human METTL18 is a histidine-specific methyltransferase that targets RPL3 and affects ribosome biogenesis and function

    Jȩdrzej M. Małecki, Marie Francoise Odonohue, Yeji Kim, Magnus E. Jakobsson, Luca Gessa, Rita Pinto, Jie Wu, Erna Davydova, Anders Moen, Jesper V. Olsen, Bernd Thiede, Pierre Emmanuel Gleizes, Sebastian A. Leidel & Pål Falnes, 2021 apr 6, I: Nucleic Acids Research. 49, 6, s. 3185-3203 19 s.

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  5. 2020
  6. The human methyltransferase ZCCHC4 catalyses N6-methyladenosine modification of 28S ribosomal RNA

    Rita Pinto, Cathrine B Vågbø, Magnus E Jakobsson, Yeji Kim, Marijke P Baltissen, Marie-Françoise O'Donohue, Ulises H Guzmán, Jędrzej M Małecki, Jie Wu, Finn Kirpekar, Jesper V Olsen, Pierre-Emmanuel Gleizes, Michiel Vermeulen, Sebastian A Leidel, Geir Slupphaug & Pål Ø Falnes, 2020 jan 24, I: Nucleic Acids Research. 48, 2, s. 830-846 17 s.

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  7. A sensitive assay for dNTPs based on long synthetic oligonucleotides, EvaGreen dye and inhibitor-resistant high-fidelity DNA polymerase

    Janne Purhonen, Rishi Banerjee, Allison E. McDonald, Vineta Fellman & Jukka Kallijärvi, 2020, I: Nucleic Acids Research. 48, 15, s. e87

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  8. OGRDB: a reference database of inferred immune receptor genes

    William Lees, Christian E. Busse, Martin Corcoran, Mats Ohlin, Cathrine Scheepers, Frederick A. Matsen, Gur Yaari, Corey T. Watson, Andrew Collins, Adrian J. Shepherd & AIRR Community AIRR Community, 2020, I: Nucleic Acids Research. 48, D1, s. D964-D970

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  9. Targeting OGG1 arrests cancer cell proliferation by inducing replication stress

    Torkild Visnes, Carlos Benítez-Buelga, Armando Cázares-Körner, Kumar Sanjiv, Bishoy M F Hanna, Oliver Mortusewicz, Varshni Rajagopal, Julian J Albers, Daniel W Hagey, Tove Bekkhus, Saeed Eshtad, Juan Miguel Baquero, Geoffrey Masuyer, Olov Wallner, Sarah Müller, Therese Pham, Camilla Göktürk, Azita Rasti, Sharda Suman, Raúl Torres-Ruiz & 26 andra, Antonio Sarno, Elisée Wiita, Evert J Homan, Stella Karsten, Karthick Marimuthu, Maurice Michel, Tobias Koolmeister, Martin Scobie, Olga Loseva, Ingrid Almlöf, Judith Edda Unterlass, Aleksandra Pettke, Johan Boström, Monica Pandey, Helge Gad, Patrick Herr, Ann-Sofie Jemth, Samir El Andaloussi, Christina Kalderén, Sandra Rodriguez-Perales, Javier Benítez, Hans E Krokan, Mikael Altun, Pål Stenmark, Ulrika Warpman Berglund & Thomas Helleday, 2020, I: Nucleic Acids Research. gkaa1048.

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  10. 2019
  11. Enzyme-free optical DNA mapping of the human genome using competitive binding

    Vilhelm Müller, Albertas Dvirnas, John Andersson, Vandana Singh, Sriram Kk, Pegah Johansson, Yuval Ebenstein, Tobias Ambjörnsson & Fredrik Westerlund, 2019 sep 5, I: Nucleic Acids Research. 47, 15, e89.

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  12. Proteomic and transcriptomic experiments reveal an essential role of RNA degradosome complexes in shaping the transcriptome of Mycobacterium tuberculosis

    Przemysław Płociński, Maria Macios, Joanna Houghton, Emilia Niemiec, Renata Płocińska, Anna Brzostek, Marcin Słomka, Jarosław Dziadek, Douglas Young & Andrzej Dziembowski, 2019 jun 20, I: Nucleic Acids Research. 47, 11, s. 5892-5905 14 s.

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  13. 2018
  14. MutT homologue 1 (MTH1) catalyzes the hydrolysis of mutagenic O6-methyl-dGTP

    Ann-Sofie Jemth, Robert Gustafsson, Lars Bräutigam, Linda Henriksson, Karl S A Vallin, Antonio Sarno, Ingrid Almlöf, Evert Homan, Azita Rasti, Ulrika Warpman Berglund, Pål Stenmark & Thomas Helleday, 2018 nov 16, I: Nucleic Acids Research. 46, 20, s. 10888-10904

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  15. Mu transpososome activity-profiling yields hyperactive MuA variants for highly efficient genetic and genome engineering

    Tiina S. Rasila, Elsi Pulkkinen, Saija Kiljunen, Saija Haapa-Paananen, Maria I. Pajunen, Anu Salminen, Lars Paulin, Mauno Vihinen, Phoebe A. Rice & Harri Savilahti, 2018 maj 18, I: Nucleic Acids Research. 46, 9, s. 4649-4661 13 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  16. The DNA damage response activates HPV16 late gene expression at the level of RNA processing

    Kersti Nilsson, Chengjun Wu, Naoko Kajitani, Haoran Yu, Efthymios Tsimtsirakis, Lijing Gong, Ellenor B. Winquist, Jacob Glahder, Lars Ekblad, Johan Wennerberg & Stefan Schwartz, 2018 jan 1, I: Nucleic Acids Research. 46, 10, s. 5029-5049

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  17. 2017
  18. hnRNP L controls HPV16 RNA polyadenylation and splicing in an Akt kinase-dependent manner

    Naoko Kajitani, Jacob Glahder, Chengjun Wu, Haoran Yu, Kersti Nilsson & Stefan Schwartz, 2017 sep 19, I: Nucleic Acids Research. 45, 16, s. 9654-9678 25 s.

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  19. Methylation of human eukaryotic elongation factor alpha (eEF1A) by a member of a novel protein lysine methyltransferase family modulates mRNA translation

    Magnus E Jakobsson, Jedrzej Malecki, Benedikt S Nilges, Anders Moen, Sebastian A Leidel & Pål Ø Falnes, 2017 aug 21, I: Nucleic Acids Research. 45, 14, s. 8239-8254 16 s.

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  20. The novel lysine specific methyltransferase METTL21B affects mRNA translation through inducible and dynamic methylation of Lys-165 in human eukaryotic elongation factor 1 alpha (eEF1A)

    Jedrzej Malecki, Vinay Kumar Aileni, Angela Y Y Ho, Juliane Schwarz, Anders Moen, Vigdis Sørensen, Benedikt S Nilges, Magnus E Jakobsson, Sebastian A Leidel & Pål Ø Falnes, 2017 maj 5, I: Nucleic Acids Research. 45, 8, s. 4370-4389 20 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  21. Expanded national database collection and data coverage in the FINDbase worldwide database for clinically relevant genomic variation allele frequencies

    Emmanouil Viennas, Angeliki Komianou, Clint Mizzi, Maja Stojiljkovic, Christina Mitropoulou, Juha Muilu, Mauno Vihinen, Panagiota Grypioti, Styliani Papadaki, Cristiana Pavlidis, Branka Zukic, Theodora Katsila, Peter J. Van Der Spek, Sonja Pavlovic, Giannis Tzimas & George P Patrinos, 2017 jan 1, I: Nucleic Acids Research. 45, D1, s. D846-D853

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  22. 2016
  23. A quantitative proteomics approach identifies ETV6 and IKZF1 as new regulators of an ERG-driven transcriptional network

    Ashwin Unnikrishnan, Yi F Guan, Yizhou Huang, Dominik Beck, Julie A I Thoms, Sofie Peirs, Kathy Knezevic, Shiyong Ma, Inge V de Walle, Ineke de Jong, Zara Ali, Ling Zhong, Mark J Raftery, Tom Taghon, Jonas Larsson, Karen L MacKenzie, Pieter Van Vlierberghe, Jason W H Wong & John E Pimanda, 2016 dec 15, I: Nucleic Acids Research. 44, 22, s. 10644-10661

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  24. 2015
  25. Bacteriophage strain typing by rapid single molecule analysis.

    Assaf Grunwald, Moran Dahan, Anna Giesbertz, Adam Nilsson, Lena K Nyberg, Elmar Weinhold, Tobias Ambjörnsson, Fredrik Westerlund & Yuval Ebenstein, 2015, I: Nucleic Acids Research. 43, 18, s. e117

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  26. Ionic switch controls the DNA state in phage λ.

    Dong Li, Ting Liu, Xiaobing Zuo, Tao Li, Xiangyun Qiu & Alex Evilevitch, 2015, I: Nucleic Acids Research. 43, 13, s. 6348-6358

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  27. The Biobanking Analysis Resource Catalogue (BARCdb): a new research tool for the analysis of biobank samples.

    Joakim Galli, Johan Oelrich, Michael J Taussig, Ulrika Andreasson, Eva Ortega-Paino & Ulf Landegren, 2015, I: Nucleic Acids Research. 43, D1, s. D1158-D1162

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  28. 2014
  29. Quantification of DNA-associated proteins inside eukaryotic cells using single-molecule localization microscopy

    Thomas J Etheridge, Rémi L Boulineau, Alex Herbert, Adam T Watson, Yasukazu Daigaku, Jem Tucker, Sophie George, Peter Jönsson, Matthieu Palayret, David Lando, Ernest Laue, Mark A Osborne, David Klenerman, Steven F Lee & Antony M Carr, 2014 okt 29, I: Nucleic Acids Research. 42, 19, s. e146

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  30. Competitive binding-based optical DNA mapping for fast identification of bacteria - multi-ligand transfer matrix theory and experimental applications on Escherichia coli.

    Adam Nilsson, Gustav Emilsson, Lena K Nyberg, Charleston Noble, Liselott Svensson Stadler, Joachim Fritzsche, Edward R B Moore, Jonas Tegenfeldt, Tobias Ambjörnsson & Fredrik Westerlund, 2014, I: Nucleic Acids Research. 42, 15, s. e118

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  31. Major capsid reinforcement by a minor protein in herpesviruses and phage.

    Udom Sae-Ueng, Ting Liu, Carlos Enrique Catalano, Jamie B Huffman, Fred L Homa & Alex Evilevitch, 2014, I: Nucleic Acids Research. 42, 14, s. 9096-9107

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  32. Nova1 is a master regulator of alternative splicing in pancreatic beta cells.

    Olatz Villate, Jean-Valery Turatsinze, Loriana G Mascali, Fabio A Grieco, Tatiane C Nogueira, Daniel A Cunha, Tarlliza R Nardelli, Michael Sammeth, Vishal Ashok Salunkhe, Jonathan Esguerra, Lena Eliasson, Lorella Marselli, Piero Marchetti & Decio L Eizirik, 2014, I: Nucleic Acids Research. 42, 18, s. 11818-11830

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  33. REST mediates androgen receptor actions on gene repression and predicts early recurrence of prostate cancer.

    Charlotte Svensson, Jens Ceder, Diego Iglesias-Gato, Yin-Choy Chuan, See Tong Pang, Anders Bjartell, Roxana Merino Martinez, Laura Bott, Leszek Helczynski, David Ulmert, Yuzhuo Wang, Yuanjie Niu, Colin Collins & Amilcar Flores-Morales, 2014, I: Nucleic Acids Research. 42, 2, s. 999-1015

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  34. 2013
  35. Evaluation of TRAP-sequencing technology with a versatile conditional mouse model

    Mike Hupe, Minerva Xueting Li, Karin Gertow Gillner, Ralf H Adams & Jan M Stenman, 2013 okt 27, I: Nucleic Acids Research. 42, 2, e14.

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  36. Plant nonsense-mediated mRNA decay is controlled by different autoregulatory circuits and can be induced by an EJC-like complex

    Tünde Nyikó, Farkas Kerényi, Levente Szabadkai, Anna H Benkovics, Péter Major, Boglárka Sonkoly, Zsuzsanna Mérai, Endre Barta, Emilia Niemiec, Joanna Kufel & Dániel Silhavy, 2013 jul, I: Nucleic Acids Research. 41, 13, s. 6715-28 14 s.

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  37. miR-23b regulates cytoskeletal remodeling, motility and metastasis by directly targeting multiple transcripts

    Loredana Pellegrino, Justin Stebbing, Vania M Braga, Adam E Frampton, Jimmy Jacob, Lakjaya Buluwela, Long R Jiao, Manikandan Periyasamy, Chris D Madsen, Matthew P Caley, Silvia Ottaviani, Laura Roca-Alonso, Mona El-Bahrawy, R Charles Coombes, Jonathan Krell & Leandro Castellano, 2013 maj 1, I: Nucleic Acids Research. 41, 10, s. 5400-12 13 s.

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  38. DNA bending-induced phase transition of encapsidated genome in phage λ

    Gabriel C Lander, John E Johnson, Donald C Rau, Clinton S Potter, Bridget Carragher & Alex Evilevitch, 2013, I: Nucleic Acids Research. 41, 8, s. 4518

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  39. HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis.

    Frederik Otzen Bagger, Nicolas Rapin, Kim Theilgaard-Moench, Bogumil Kaczkowski, Lina Thorén, Johan Jendholm, Ole Winther & Bo T Porse, 2013, I: Nucleic Acids Research. 41, D1, s. D1034-D1039

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  40. PlantLoc: an accurate web server for predicting plant protein subcellular localization by substantiality motif.

    Shengnan Tang, Tonghua Li, Peisheng Cong, Wenwei Xiong, Zhiheng Wang & Jiangming Sun, 2013, I: Nucleic Acids Research. 41, W1, s. W441-W447

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  41. Suppression of HPV-16 late L1 5'-splice site SD3632 by binding of hnRNP D proteins and hnRNP A2/B1 to upstream AUAGUA RNA motifs.

    Xiaoze Li, Cecilia Johansson, Jacob Glahder, Anki Mossberg & Stefan Schwartz, 2013, I: Nucleic Acids Research. 41, 22, s. 10488-10508

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  42. 2012
  43. HapZipper: sharing HapMap populations just got easier

    Pritam Chanda, Eran Elhaik & Joel S Bader, 2012 nov 1, I: Nucleic Acids Research. 40, 20, 7 s., e159.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  44. Structure of the bifunctional methyltransferase YcbY (RlmKL) that adds the m7G2069 and m2G2445 modifications in Escherichia coli 23S rRNA

    Kai-Tuo Wang, Benoit Desmolaize, Jie Nan, Xiao-Wei Zhang, Lan-Fen Li, Stephen Douthwaite & Xiao-Dong Su, 2012 jun, I: Nucleic Acids Research. 40, 11, s. 5138-48 11 s.

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  45. Telomerase-dependent generation of 70-nt-long telomeric single-stranded 3' overhangs in yeast

    Helena Fridholm, Eimantas Astromskas & Marita Cohn, 2012, I: Nucleic Acids Research.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  46. 2010
  47. Identifying compositionally homogeneous and nonhomogeneous domains within the human genome using a novel segmentation algorithm

    Eran Elhaik, Dan Graur, Kresimir Josić & Giddy Landan, 2010 aug, I: Nucleic Acids Research. 38, 15, 9 s., e158.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  48. 2009
  49. Kinetic and thermodynamic characterization of single-mismatch discrimination using single-molecule imaging

    Anders Gunnarsson, Peter Jönsson, Vladimir P Zhdanov & Fredrik Höök, 2009 aug, I: Nucleic Acids Research. 37, 14, s. e99

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  50. SuperScent--a database of flavors and scents

    Mathias Dunkel, Ulrike Schmidt, Swantje Struck, Lena Berger, Bjoern Gruening, Julia Hossbach, Ines S Jaeger, Uta Effmert, Birgit Piechulla, Roger Eriksson, Jette Knudsen & Robert Preissner, 2009, I: Nucleic Acids Research. 37, s. D291-D294

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  51. Tissue-specific regulatory network extractor (TS-REX): a database and software resource for the tissue and cell type-specific investigation of transcription factor-gene networks.

    Federico Colecchia, Denise Kottwitz, Mandy Wagner, Cosima Pfenninger, Gerald Thiel, Ingo Tamm, Carsten Peterson & Ulrike Nuber, 2009, I: Nucleic Acids Research. 37, 11, s. e82

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  52. 2007
  53. Conserved nucleotides in an RNA essential for hepatitis B virus replication show distinct mobility patterns.

    Katja Petzold, Elke Duchardt, Sara Flodell, Göran Larsson, Karin Kidd-Ljunggren, Sybren Wijmenga & Jürgen Schleucher, 2007, I: Nucleic Acids Research. 35, 20, s. 6854-6861

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  54. DNA binding mechanism revealed by high resolution crystal structure of Arabidopsis thaliana WRKY1 protein

    Ming-Rui Duan, Jie Nan, Yu-He Liang, Peng Mao, Lu Lu, Lanfen Li, Chunhong Wei, Luhua Lai, Yi Li & Xiao-Dong Su, 2007, I: Nucleic Acids Research. 35, 4, s. 1145-54 10 s.

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  55. High-precision mapping of protein protein interfaces: an integrated genetic strategy combining en masse mutagenesis and DNA-level parallel analysis on a yeast two-hybrid platform.

    Maria Pajunen, Hilkka Turakainen, Eini Poussu, Johan Peränen, Mauno Vihinen & Harri Savilahti, 2007, I: Nucleic Acids Research. 35, 16, s. e103

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  56. 2006
  57. Solution structure of the apical stem-loop of the human hepatitis B virus encapsidation signal

    Sara Flodell, Michael Petersen, Frederic Girard, Janusz Zdunek, Karin Kidd-Ljunggren, Jurgen Schleucher & Sybren Wijmenga, 2006, I: Nucleic Acids Research. 34, 16, s. 4449-4457

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  58. 2005
  59. Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

    Peter Karp, Christos Ouzounis, Caroline Moore-Kochlacs, Leon Goldovsky, Pallavi Kaipa, Dag Ahrén, Sophia Tsoka, Nikos Darzentas, Victor Kunin & Núria López-Bigas, 2005, I: Nucleic Acids Research. 33, 19, s. 6083-6089

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  60. Genome-wide selection of unique and valid oligonucleotides.

    Heikki Hyyrö, Martti Juhola & Mauno Vihinen, 2005, I: Nucleic Acids Research. 33, 13, s. e115

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  61. Measuring genome conservation across taxa: divided strains and united kingdoms

    Victor Kunin, Dag Ahrén, Leon Goldovsky, Paul Janssen & Christos A. Ouzounis, 2005, I: Nucleic Acids Research. 33, 2, s. 616-621

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  62. 2004
  63. Human protein reference database as a discovery resource for proteomics

    Suraj Peri, J Daniel Navarro, Troels Z Kristiansen, Ramars Amanchy, Vineeth Surendranath, Babylakshmi Muthusamy, T K B Gandhi, K N Chandrika, Nandan Deshpande, Shubha Suresh, B. P. Rashmi, K Shanker, N Padma, Vidya Niranjan, H C Harsha, Naveen Talreja, B M Vrushabendra, M A Ramya, A J Yatish, Mary Joy & 13 andra, H N Shivashankar, M P Kavitha, Minal Menezes, Dipanwita Roy Choudhury, Neelanjana Ghosh, R Saravana, Sreenath Chandran, S Sujatha Mohan, Chandra Kiran Jonnalagadda, C K Prasad, Chandan Kumar-Sinha, Krishna S Deshpande & Akhilesh Pandey, 2004 jan 1, I: Nucleic Acids Research. 32, Database issue, s. D497-501

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

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