Fredrik Levander

Universitetslektor
Fler filtreringsmöjligheter
  1. 2020
  2. Interactive proteogenomic exploration of response to Fusarium head blight in oat varieties with different resistance

    J Willforss, S Leonova, Tillander, J., Andreasson, E., Marttila, S., Olsson, O., Chawade, A. & F Levander, 2020 apr 30, I : Journal of Proteomics. 218, s. 103688

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  3. An integrated transcriptomic- and proteomic-based approach to evaluate the human skin sensitization potential of glyphosate and its commercial agrochemical formulations

    Lindberg, T., de Ávila, R. I., Kathrin S. Zeller, Fredrik Levander, Eriksson, D., Chawade, A. & Malin Lindstedt, 2020 apr 15, I : Journal of Proteomics. 217, 103647.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  4. 2019
  5. Proteomics of PTI and Two ETI Immune Reactions in Potato Leaves

    Resjö, S., Zahid, M. A., Burra, D. D., Lenman, M., Fredrik Levander & Andreasson, E., 2019 sep 24, I : International Journal of Molecular Sciences. 20, 19

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  6. Towards a standardized bioinformatics infrastructure for N- and O-glycomics

    Rojas-Macias, M. A., Mariethoz, J., Andersson, P., Jin, C., Venkatakrishnan, V., Aoki, N. P., Shinmachi, D., Ashwood, C., Madunic, K., Zhang, T., Miller, R. L., Horlacher, O., Struwe, W. B., Watanabe, Y., Okuda, S., Levander, F., Kolarich, D., Rudd, P. M., Wuhrer, M., Kettner, C. & 4 andra, Packer, N. H., Aoki-Kinoshita, K. F., Lisacek, F. & Karlsson, N. G., 2019 jul 22, I : Nature Communications. 10, 1, 3275.

    Forskningsoutput: TidskriftsbidragÖversiktsartikel

  7. 2018
  8. In vitro evolution of antibodies inspired by in vivo evolution

    Persson, H., Kirik, U., Thörnqvist, L., Greiff, L., Fredrik Levander & Mats Ohlin, 2018 jun 21, I : Frontiers in Immunology. 9, JUN, 1391.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  9. Comparative membrane-associated proteomics of three different immune reactions in potato

    Burra, D. D., Lenman, M., Fredrik Levander, Resjö, S. & Andreasson, E., 2018 feb 10, I : International Journal of Molecular Sciences. 19, 2, 538.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  10. Patient-derived xenograft models reveal intratumor heterogeneity and temporal stability in neuroblastoma

    Braekeveldt, N., Von Stedingk, K., Fransson, S., Martinez-Monleon, A., Lindgren, D., Axelson, H., Levander, F., Willforss, J., Hansson, K., Øra, I., Backman, T., Börjesson, A., Beckman, S., Esfandyari, J., Berbegall, A. P., Noguera, R., Karlsson, J., Koster, J., Martinsson, T., Gisselsson, D. & 2 andra, Sven Påhlman & Daniel Bexell, 2018, I : Cancer Research. 78, 20, s. 5958-5969 12 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  11. 2017
  12. Antibody heavy chain variable domains of different germline gene origins diversify through different paths

    Kirik, U., Persson, H., Fredrik Levander, Greiff, L. & Mats Ohlin, 2017 nov 13, I : Frontiers in Immunology. 8, NOV, 1433.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  13. Proteomic analysis of phytophthora infestans reveals the importance of cell wall proteins in pathogenicity

    Resjö, S., Brus, M., Ashfaq Ali, Meijer, H. J. G., Sandin, M., Govers, F., Fredrik Levander, Grenville-Briggs, L. J. & Andreasson, E., 2017 nov 1, I : Molecular and Cellular Proteomics. 16, 11, s. 1958-1971 14 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  14. Data on haplotype-supported immunoglobulin germline gene inference

    Kirik, U., Greiff, L., Fredrik Levander & Mats Ohlin, 2017 aug 1, I : Data in Brief. 13, s. 620-640 21 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  15. Parallel antibody germline gene and haplotype analyses support the validity of immunoglobulin germline gene inference and discovery

    Kirik, U., Greiff, L., Fredrik Levander & Mats Ohlin, 2017 jul 1, I : Molecular Immunology. 87, s. 12-22 11 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  16. NLK-mediated phosphorylation of HDAC1 negatively regulates Wnt signaling

    Masoumi, K. C., Renée Daams, Wondossen Sime, Valentina Siino, Ke, H., Fredrik Levander & Ramin Massoumi, 2017 jan 15, I : Molecular Biology of the Cell. 28, 2, s. 346-355 10 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  17. A community proposal to integrate proteomics activities in ELIXIR

    Vizcaíno, J. A., Walzer, M., Jiménez, R. C., Bittremieux, W., Bouyssié, D., Carapito, C., Corrales, F., Ferro, M., Heck, A. J. R., Horvatovich, P., Hubalek, M., Lane, L., Laukens, K., Levander, F., Lisacek, F., Novak, P., Palmblad, M., Piovesan, D., Pühler, A., Schwämmle, V. & 6 andra, Valkenborg, D., van Rijswijk, M., Vondrasek, J., Eisenacher, M., Martens, L. & Kohlbacher, O., 2017, I : F1000Research. 6, 875.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  18. Antibody-encoding repertoires of bone marrow and peripheral blood-a focus on IgE

    Levin, M., Fredrik Levander, Palmason, R., Greiff, L. & Mats Ohlin, 2017, I : Journal of Allergy and Clinical Immunology. 139, 3, s. 1026-1030

    Forskningsoutput: TidskriftsbidragLetter

  19. 2016
  20. Aberrant activation of the PI3K/mTOR pathway promotes resistance to sorafenib in AML

    O Lindblad, Cordero, E., Puissant, A., Macaulay, L., Ramos, A., Kabir, N. N., J Sun, J Vallon-Christersson, Haraldsson, K., Hemann, M. T., Åke Borg, F Levander, Stegmaier, K., K Pietras, L Rönnstrand & J U Kazi, 2016 sep 29, I : Oncogene. 35, 39, s. 5119-5131 13 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  21. Dinosaur: A Refined Open-Source Peptide MS Feature Detector

    Teleman, J., Chawade, A., Sandin, M., Fredrik Levander & Johan Malmström, 2016 jul 1, I : Journal of Proteome Research. 15, 7, s. 2143-2151 9 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  22. Targeted Proteomics Approach for Precision Plant Breeding

    Chawade, A., Alexandersson, E., Bengtsson, T., Andreasson, E. & Fredrik Levander, 2016 feb 5, I : Journal of Proteome Research. 15, 2, s. 638-642 9 s.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  23. 2015
  24. BEX1 acts as a tumor suppressor in acute myeloid leukemia.

    Oscar Lindblad, Li, T., Su, X., Jianmin Sun, Kabir, N. N., Fredrik Levander, Zhao, H., Lu, G., Lars Rönnstrand & Julhash U. Kazi, 2015, I : Oncotarget. 6, 25, s. 21395-21405

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  25. Comparative proteomic analysis of hyphae and germinating cysts of Phytophthora pisi and Phytophthora sojae.

    Hosseini, S., Resjö, S., Liu, Y., Durling, M., Heyman, F., Fredrik Levander, Liu, Y., Elfstrand, M., Funck Jensen, D., Andreasson, E. & Karlsson, M., 2015, I : Journal of Proteomics. 117, s. 24-40

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  26. Data Processing Has Major Impact on the Outcome of Quantitative Label-Free LC-MS Analysis

    Chawade, A., Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2015, I : Journal of Proteome Research. 14, 2, s. 676-687

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  27. DIANA - algorithmic improvements for analysis of data-independent acquisition MS data.

    Teleman, J., Röst, H., Rosenberger, G., Schmitt, U., Malmström, L., Johan Malmström & Fredrik Levander, 2015, I : Bioinformatics. 31, 4, s. 555-562

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  28. Is label-free LC-MS/MS ready for biomarker discovery?

    Sandin, M., Chawade, A. & Fredrik Levander, 2015, I : Proteomics Clinical Applications. 9, 3-4, s. 289-294

    Forskningsoutput: TidskriftsbidragDebate/Note/Editorial

  29. Representation of selected-reaction monitoring data in the mzQuantML data standard

    Qi, D., Lawless, C., Teleman, J., Fredrik Levander, Holman, S. W., Hubbard, S. & Jones, A. R., 2015, I : Proteomics. 15, 15, s. 2592-2596

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  30. 2014
  31. Data processing methods and quality control strategies for label-free LC-MS protein quantification.

    Sandin, M., Teleman, J., Johan Malmström & Fredrik Levander, 2014, I : Biochimica et biophysica acta. 1844, 1, s. 29-41

    Forskningsoutput: TidskriftsbidragÖversiktsartikel

  32. Framtidens mat – om husdjursavel och växtförädling

    Lehrman, A. (red.), Lehrman, A., Chatzopoulou, S., Feng, L., Forabosco, F., Jonas, E., Karantininis, K., Fredrik Levander, Nicolia, A., Rydhmer, L., Röcklinsberg, H., Sandin, P., Sundström, J. & Zhu, L-H., 2014, SLU, Uppsala. 88 s.

    Forskningsoutput: Bok/rapportBok

  33. Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets

    Chawade, A., Alexandersson, E. & Fredrik Levander, 2014, I : Journal of Proteome Research. 13, 6, s. 3114-3120

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  34. Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans

    Burra, D. D., Berkowitz, O., Hedley, P. E., Morris, J., Resjoe, S., Fredrik Levander, Liljeroth, E., Andreasson, E. & Alexandersson, E., 2014, I : BMC Plant Biology. 14, 254.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  35. Proteomics and transcriptomics of the BABA-induced resistance response in potato using a novel functional annotation approach

    Bengtsson, T., Weighill, D., Proux-Wera, E., Fredrik Levander, Resjo, S., Burra, D. D., Moushib, L., Hedley, P. E., Liljeroth, E., Jacobson, D., Alexandersson, E. & Andreasson, E., 2014, I : BMC Genomics. 15

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  36. Quantitative Label-Free Phosphoproteomics of Six Different Life Stages of the Late Blight Pathogen Phytophthora infestans Reveals Abundant Phosphorylation of Members of the CRN Effector Family

    Resjo, S., Ali, A., Meijer, H. J. G., Seidl, M. F., Snel, B., Sandin, M., Fredrik Levander, Govers, F. & Andreasson, E., 2014, I : Journal of Proteome Research. 13, 4, s. 1848-1859

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  37. Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions

    Ali, A., Alexandersson, E., Sandin, M., Resjo, S., Lenman, M., Hedley, P., Fredrik Levander & Andreasson, E., 2014, I : BMC Genomics. 15, 497.

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  38. 2013
  39. An adaptive alignment algorithm for quality-controlled label-free LC-MS.

    Sandin, M., Ali, A., Hansson, K., Månsson, O., Andreasson, E., Resjö, S. & Fredrik Levander, 2013, I : Molecular & Cellular Proteomics. 12, 5, s. 1407-1420

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  40. Automated quality control system for LC-SRM setups.

    Teleman, J., Waldemarson, S., Johan Malmström & Fredrik Levander, 2013, I : Journal of Proteomics. 95, Online 11 April 2013, s. 77-83

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  41. Proteome of the nematode-trapping cells of the fungus Monacrosporium haptotylum.

    Andersson, K-M., Meerupati, T., Fredrik Levander, Friman, E., Dag Ahrén & Anders Tunlid, 2013, I : Applied and Environmental Microbiology. 79, 16, s. 4993-5004

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  42. The HUPO proteomics standards initiative-mass spectrometry controlled vocabulary

    Mayer, G., Montecchi-Palazzi, L., Ovelleiro, D., Jones, A. R., Binz, P-A., Deutsch, E. W., Chambers, M., Kallhardt, M., Fredrik Levander, Shofstahl, J., Orchard, S., Vizcaino, J. A., Hermjakob, H., Stephan, C., Meyer, H. E. & Eisenacher, M., 2013, I : Database: the Journal of Biological Databases and Curation. s. bat009

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  43. 2012
  44. Paranoid potato: phytophthora-resistant genotype shows constitutively activated defense

    Ashfaq Ali, Moushib, L. I., Lenman, M., Fredrik Levander, Olsson, K., Carlson-Nilson, U., Zoteyeva, N., Liljeroth, E. & Andreasson, E., 2012 mar, I : Plant Signaling and Behavior. 7, 3, s. 400-408

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  45. Automated Selected Reaction Monitoring Software for Accurate Label-Free Protein Quantification.

    Teleman, J., Christofer Karlsson, Waldemarson, S., Hansson, K. M., Peter James, Johan Malmström & Fredrik Levander, 2012, I : Journal of Proteome Research. 11, 7, s. 3766-3773

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  46. Critical Comparison of Multidimensional Separation Methods for Increasing Protein Expression Coverage

    Antberg, L., Cifani, P., Sandin, M., Fredrik Levander & Peter James, 2012, I : Journal of Proteome Research. 11, 5, s. 2644-2652

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  47. Multimodel Pathway Enrichment Methods for Functional Evaluation of Expression Regulation.

    Kirik, U., Cifani, P., Albrekt, A-S., Malin Lindstedt, Anders Heyden & Fredrik Levander, 2012, I : Journal of Proteome Research. 11, 5, s. 2955-2967

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  48. Relative Quantification of Membrane Proteins in Wild-Type and Prion Protein (PrP)-Knockout Cerebellar Granule Neurons

    Stella, R., Cifani, P., Peggion, C., Hansson, K. M., Lazzari, C., Bendz, M., Fredrik Levander, Sorgato, M. C., Bertoli, A. & Peter James, 2012, I : Journal of Proteome Research. 11, 2, s. 523-536

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  49. TraML: a standard format for exchange of selected reaction monitoring transition lists

    Deutsch, E. W., Chambers, M., Neumann, S., Fredrik Levander, Binz, P-A., Shofstahl, J., Campbell, D. S., Mendoza, L., Ovelleiro, D., Helsens, K., Martens, L., Aebersold, R., Moritz, R. L. & Brusniak, M-Y., 2012, I : Molecular & Cellular Proteomics. 11, 4, s. R111.015040

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  50. 2011
  51. Facing challenges in proteomics today and in the coming decade: report of roundtable discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010

    Cox, J., Heeren, R. M. A., Peter James, Jorrin-Novo, J. V., Kolker, E., Fredrik Levander, Morrice, N., Picotti, P., Righetti, P. G., Sánchez, J-C., Turck, C. W., Zubarev, R., Alexandre, B. M., Corrales, F. J. & György Marko-Varga, 2011, I : Journal of Proteomics. 75, 1, s. 4-17

    Forskningsoutput: TidskriftsbidragLetter

  52. Generic workflow for quality assessment of quantitative label-free LC-MS analysis

    Sandin, M., Krogh, M., Hansson, K. M. & Fredrik Levander, 2011, I : Proteomics. 11, 6, s. 1114-1124

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  53. Hunting for Protein Markers of Hypoxia by Combining Plasma Membrane Enrichment with a New Approach to Membrane Protein Analysis

    Cifani, P., Bendz, M., Wårell, K., Hansson, K. M., Fredrik Levander, Sandin, M., Krogh, M., Ovenberger, M., Fredlund, E., Vaapil, M., Alexander Pietras, Sven Påhlman & Peter James, 2011, I : Journal of Proteome Research. 10, 4, s. 1645-1656

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  54. Laboratory data and sample management for proteomics.

    Jari Häkkinen & Fredrik Levander, 2011, Data Mining in Proteomics : From Standards to Applications. Hamacher, M., Eisenacher, M. & Stephan, C. (red.). Springer, Vol. 696. s. 79-92 (Methods in Molecular Biology; vol. 696).

    Forskningsoutput: Kapitel i bok/rapport/Conference proceedingKapitel samlingsverk

  55. mzML - a community standard for mass Spectrometry data

    Martens, L., Chambers, M., Sturm, M., Kessner, D., Fredrik Levander & Shofstahl, J., 2011, I : Molecular & Cellular Proteomics. 10, 1, s. R110.000133.1-R110.000133.2

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  56. 2010
  57. Improved label-free LC-MS analysis by wavelet-based noise rejection

    Cappadona, S., Nanni, P., Benevento, M., Fredrik Levander, Versura, P., Roda, A., Cerutti, S. & Pattini, L., 2010, I : Journal of Biomedicine and Biotechnology. 2010

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  58. 2009
  59. A label-free nano-liquid chromatography-mass spectrometry approach for quantitative serum peptidomics in Crohn's disease patients.

    Nanni, P., Fredrik Levander, Roda, G., Caponi, A., Peter James & Roda, A., 2009, I : Journal of Chromatography. B. 877, 27, s. 3127-3136

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

  60. Differential proteomic analysis of HT29 Cl.16E cells line and intestinal epithelial cells by LC ESI/QTOF mass spectrometry.

    Nanni, P., Mezzanottea, L., Roda, G., Caponi, A., Fredrik Levander, Peter James & Roda, A., 2009, I : Journal of Proteomics. 72, 5, s. 865-873

    Forskningsoutput: TidskriftsbidragArtikel i vetenskaplig tidskrift

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