Sammanfattning
terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
| Originalspråk | engelska |
|---|---|
| Sidor (från-till) | 167-175 |
| Tidskrift | IMA Fungus |
| Volym | 9 |
| Utgåva | 1 |
| DOI | |
| Status | Published - 2018 |
Ämnesklassifikation (UKÄ)
- Biologisk systematik
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Considerations and consequences of allowing DNA sequence data as types of fungal taxa. / Zamora, Juan Carlos; Svensson, Måns; Kirschner, Roland; Olariaga, Ibai; Ryman, Svengunnar; Parra, Luis Alberto; Geml, József; Rosling, Anna; Adamčík, Slavomír; Ahti, Teuvo; Aime, M. Catherine; Ainsworth, A. Martyn; Albert, László; Albertó, Edgardo; Altés García, Alberto; Ageev, Dmitry; Agerer, Reinhard; Aguirre-hudson, Begoña; Ammirati, Joe; Andersson, Harry; Angelini, Claudio; Antonín, Vladimír; Aoki, Takayuki; Aptroot, André; Argaud, Didier; Arguello Sosa, Blanca Imelda; Aronsen, Arne; Arup, Ulf; Asgari, Bita; Assyov, Boris; Atienza, Violeta; Bandini, Ditte; Baptista-ferreira, João Luís; Baral, Hans-otto; Baroni, Tim; Barreto, Robert Weingart; Beker, Henry; Bell, Ann; Bellanger, Jean-michel; Bellù, Francesco; Bemmann, Martin; Bendiksby, Mika; Bendiksen, Egil; Bendiksen, Katriina; Benedek, Lajos; Bérešová-guttová, Anna; Berger, Franz; Berndt, Reinhard; Bernicchia, Annarosa; Biketova, Alona Yu.; Bizio, Enrico; Bjork, Curtis; Boekhout, Teun; Boertmann, David; Böhning, Tanja; Boittin, Florent; Boluda, Carlos G.; Boomsluiter, Menno W.; Borovička, Jan; Brandrud, Tor Erik; Braun, Uwe; Brodo, Irwin; Bulyonkova, Tatiana; Burdsall Jr., Harold H.; Buyck, Bart; Burgaz, Ana Rosa; Calatayud, Vicent; Callac, Philippe; Campo, Emanuele; Candusso, Massimo; Capoen, Brigitte; Carbó, Joaquim; Carbone, Matteo; Castañeda-ruiz, Rafael F.; Castellano, Michael A.; Chen, Jie; Clerc, Philippe; Consiglio, Giovanni; Corriol, Gilles; Courtecuisse, Régis; Crespo, Ana; Cripps, Cathy; Crous, Pedro W.; Da Silva, Gladstone Alves; Da Silva, Meiriele; Dam, Marjo; Dam, Nico; Dämmrich, Frank; Das, Kanad; Davies, Linda; De Crop, Eske; De Kesel, Andre; De Lange, Ruben; De Madrignac Bonzi, Bárbara; Dela Cruz, Thomas Edison E.; Delgat, Lynn; Demoulin, Vincent; Desjardin, Dennis E.; Diederich, Paul; Dima, Bálint; Dios, Maria Martha; Divakar, Pradeep Kumar; Douanla-meli, Clovis; Douglas, Brian; Drechsler-santos, Elisandro Ricardo; Dyer, Paul S.; Eberhardt, Ursula; Ertz, Damien; Esteve-raventós, Fernando; Etayo Salazar, Javier Angel; Evenson, Vera; Eyssartier, Guillaume; Farkas, Edit; Favre, Alain; Fedosova, Anna G.; Filippa, Mario; Finy, Péter; Flakus, Adam; Fos, Simón; Fournier, Jacques; Fraiture, André; Franchi, Paolo; Franco Molano, Ana Esperanza; Friebes, Gernot; Frisch, Andreas; Fryday, Alan; Furci, Giuliana; Galán Márquez, Ricardo; Garbelotto, Matteo; García-martín, Joaquina María; García Otálora, Mónica A.; García Sánchez, Dania; Gardiennet, Alain; Garnica, Sigisfredo; Garrido Benavent, Isaac; Gates, Genevieve; Gerlach, Alice Da Cruz Lima; Ghobad-nejhad, Masoomeh; B. Gibertoni, Tatiana; Grebenc, Tine; Greilhuber, Irmgard; Grishkan, Bella; Groenewald, Johannes Z.; Grube, Martin; Gruhn, Gérald; Gueidan, Cécile; Gulden, Gro; Gusmão, Luis Fp; Hafellner, Josef; Hairaud, Michel; Halama, Marek; Hallenberg, Nils; Halling, Roy E.; Hansen, Karen; Harder, Christoffer Bugge; Heilmann-clausen, Jacob; Helleman, Stip; Henriot, Alain; Hernandez-restrepo, Margarita; Herve, Raphaël; Hobart, Caroline; Hoffmeister, Mascha; Høiland, Klaus; Holec, Jan; Holien, Håkon; Hughes, Karen; Hubka, Vit; Huhtinen, Seppo; Ivančević, Boris; Jagers, Marian; Jaklitsch, Walter; Jansen, Annaelise; Jayawardena, Ruvishika S.; Jeppesen, Thomas Stjernegaard; Jeppson, Mikael; Johnston, Peter; Jørgensen, Per Magnus; Kärnefelt, Ingvar; Kalinina, Liudmila B.; Kantvilas, Gintaras; Karadelev, Mitko; Kasuya, Taiga; Kautmanová, Ivona; Kerrigan, Richard W.; Kirchmair, Martin; Kiyashko, Anna; Knapp, Dániel G.; Knudsen, Henning; Knudsen, Kerry; Knutsson, Tommy; Kolařík, Miroslav; Kõljalg, Urmas; Košuthová, Alica; Koszka, Attila; Kotiranta, Heikki; Kotkova, Vera; Koukol, Ondřej; Kout, Jiří; Kovács, Gábor M.; Kříž, Martin; Kruys, Åsa; Kučera, Viktor; Kudzma, Linas; Kuhar, Francisco; Kukwa, Martin; Kumar, T. K. Arun; Kunca, Vladimír; Kušan, Ivana; Kuyper, Thomas W.; Lado, Carlos; Læssøe, Thomas; Lainé, Patrice; Langer, Ewald; Larsson, Elle; Larsson, Karl-Henrik; Laursen, Gary; Lechat, Christian; Lee, Serena; Lendemer, James C.; Levin, Laura; Lindemann, Uwe; Lindström, Håkan; Liu, Xingzhong; Llarena Hernandez, Regulo Carlos; Llop, Esteve; Locsmándi, Csaba; Lodge, Deborah Jean; Loizides, Michael; Lőkös, László; Luangsa-ard, Jennifer; Lüderitz, Matthias; Lumbsch, Thorsten; Lutz, Matthias; Mahoney, Dan; Malysheva, Ekaterina; Malysheva, Vera; Manimohan, Patinjareveettil; Marin-felix, Yasmina; Marques, Guilhermina; Martínez-gil, Rubén; Marson, Guy; Mata, Gerardo; Matheny, P. Brandon; Mathiassen, Geir Harald; Matočec, Neven; Mayrhofer, Helmut; Mehrabi, Mehdi; Melo, Ireneia; Mešić, Armin; Methven, Andrew S.; Svensson, Sigvard; Thell, Arne; Ekman, Stefan.
I: IMA Fungus, Vol. 9, Nr. 1, 2018, s. 167-175.Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift › Peer review
TY - JOUR
T1 - Considerations and consequences of allowing DNA sequence data as types of fungal taxa
AU - Zamora, Juan Carlos
AU - Svensson, Måns
AU - Kirschner, Roland
AU - Olariaga, Ibai
AU - Ryman, Svengunnar
AU - Parra, Luis Alberto
AU - Geml, József
AU - Rosling, Anna
AU - Adamčík, Slavomír
AU - Ahti, Teuvo
AU - Aime, M. Catherine
AU - Ainsworth, A. Martyn
AU - Albert, László
AU - Albertó, Edgardo
AU - Altés García, Alberto
AU - Ageev, Dmitry
AU - Agerer, Reinhard
AU - Aguirre-hudson, Begoña
AU - Ammirati, Joe
AU - Andersson, Harry
AU - Angelini, Claudio
AU - Antonín, Vladimír
AU - Aoki, Takayuki
AU - Aptroot, André
AU - Argaud, Didier
AU - Arguello Sosa, Blanca Imelda
AU - Aronsen, Arne
AU - Arup, Ulf
AU - Asgari, Bita
AU - Assyov, Boris
AU - Atienza, Violeta
AU - Bandini, Ditte
AU - Baptista-ferreira, João Luís
AU - Baral, Hans-otto
AU - Baroni, Tim
AU - Barreto, Robert Weingart
AU - Beker, Henry
AU - Bell, Ann
AU - Bellanger, Jean-michel
AU - Bellù, Francesco
AU - Bemmann, Martin
AU - Bendiksby, Mika
AU - Bendiksen, Egil
AU - Bendiksen, Katriina
AU - Benedek, Lajos
AU - Bérešová-guttová, Anna
AU - Berger, Franz
AU - Berndt, Reinhard
AU - Bernicchia, Annarosa
AU - Biketova, Alona Yu.
AU - Bizio, Enrico
AU - Bjork, Curtis
AU - Boekhout, Teun
AU - Boertmann, David
AU - Böhning, Tanja
AU - Boittin, Florent
AU - Boluda, Carlos G.
AU - Boomsluiter, Menno W.
AU - Borovička, Jan
AU - Brandrud, Tor Erik
AU - Braun, Uwe
AU - Brodo, Irwin
AU - Bulyonkova, Tatiana
AU - Burdsall Jr., Harold H.
AU - Buyck, Bart
AU - Burgaz, Ana Rosa
AU - Calatayud, Vicent
AU - Callac, Philippe
AU - Campo, Emanuele
AU - Candusso, Massimo
AU - Capoen, Brigitte
AU - Carbó, Joaquim
AU - Carbone, Matteo
AU - Castañeda-ruiz, Rafael F.
AU - Castellano, Michael A.
AU - Chen, Jie
AU - Clerc, Philippe
AU - Consiglio, Giovanni
AU - Corriol, Gilles
AU - Courtecuisse, Régis
AU - Crespo, Ana
AU - Cripps, Cathy
AU - Crous, Pedro W.
AU - Da Silva, Gladstone Alves
AU - Da Silva, Meiriele
AU - Dam, Marjo
AU - Dam, Nico
AU - Dämmrich, Frank
AU - Das, Kanad
AU - Davies, Linda
AU - De Crop, Eske
AU - De Kesel, Andre
AU - De Lange, Ruben
AU - De Madrignac Bonzi, Bárbara
AU - Dela Cruz, Thomas Edison E.
AU - Delgat, Lynn
AU - Demoulin, Vincent
AU - Desjardin, Dennis E.
AU - Diederich, Paul
AU - Dima, Bálint
AU - Dios, Maria Martha
AU - Divakar, Pradeep Kumar
AU - Douanla-meli, Clovis
AU - Douglas, Brian
AU - Drechsler-santos, Elisandro Ricardo
AU - Dyer, Paul S.
AU - Eberhardt, Ursula
AU - Ertz, Damien
AU - Esteve-raventós, Fernando
AU - Etayo Salazar, Javier Angel
AU - Evenson, Vera
AU - Eyssartier, Guillaume
AU - Farkas, Edit
AU - Favre, Alain
AU - Fedosova, Anna G.
AU - Filippa, Mario
AU - Finy, Péter
AU - Flakus, Adam
AU - Fos, Simón
AU - Fournier, Jacques
AU - Fraiture, André
AU - Franchi, Paolo
AU - Franco Molano, Ana Esperanza
AU - Friebes, Gernot
AU - Frisch, Andreas
AU - Fryday, Alan
AU - Furci, Giuliana
AU - Galán Márquez, Ricardo
AU - Garbelotto, Matteo
AU - García-martín, Joaquina María
AU - García Otálora, Mónica A.
AU - García Sánchez, Dania
AU - Gardiennet, Alain
AU - Garnica, Sigisfredo
AU - Garrido Benavent, Isaac
AU - Gates, Genevieve
AU - Gerlach, Alice Da Cruz Lima
AU - Ghobad-nejhad, Masoomeh
AU - B. Gibertoni, Tatiana
AU - Grebenc, Tine
AU - Greilhuber, Irmgard
AU - Grishkan, Bella
AU - Groenewald, Johannes Z.
AU - Grube, Martin
AU - Gruhn, Gérald
AU - Gueidan, Cécile
AU - Gulden, Gro
AU - Gusmão, Luis Fp
AU - Hafellner, Josef
AU - Hairaud, Michel
AU - Halama, Marek
AU - Hallenberg, Nils
AU - Halling, Roy E.
AU - Hansen, Karen
AU - Harder, Christoffer Bugge
AU - Heilmann-clausen, Jacob
AU - Helleman, Stip
AU - Henriot, Alain
AU - Hernandez-restrepo, Margarita
AU - Herve, Raphaël
AU - Hobart, Caroline
AU - Hoffmeister, Mascha
AU - Høiland, Klaus
AU - Holec, Jan
AU - Holien, Håkon
AU - Hughes, Karen
AU - Hubka, Vit
AU - Huhtinen, Seppo
AU - Ivančević, Boris
AU - Jagers, Marian
AU - Jaklitsch, Walter
AU - Jansen, Annaelise
AU - Jayawardena, Ruvishika S.
AU - Jeppesen, Thomas Stjernegaard
AU - Jeppson, Mikael
AU - Johnston, Peter
AU - Jørgensen, Per Magnus
AU - Kärnefelt, Ingvar
AU - Kalinina, Liudmila B.
AU - Kantvilas, Gintaras
AU - Karadelev, Mitko
AU - Kasuya, Taiga
AU - Kautmanová, Ivona
AU - Kerrigan, Richard W.
AU - Kirchmair, Martin
AU - Kiyashko, Anna
AU - Knapp, Dániel G.
AU - Knudsen, Henning
AU - Knudsen, Kerry
AU - Knutsson, Tommy
AU - Kolařík, Miroslav
AU - Kõljalg, Urmas
AU - Košuthová, Alica
AU - Koszka, Attila
AU - Kotiranta, Heikki
AU - Kotkova, Vera
AU - Koukol, Ondřej
AU - Kout, Jiří
AU - Kovács, Gábor M.
AU - Kříž, Martin
AU - Kruys, Åsa
AU - Kučera, Viktor
AU - Kudzma, Linas
AU - Kuhar, Francisco
AU - Kukwa, Martin
AU - Kumar, T. K. Arun
AU - Kunca, Vladimír
AU - Kušan, Ivana
AU - Kuyper, Thomas W.
AU - Lado, Carlos
AU - Læssøe, Thomas
AU - Lainé, Patrice
AU - Langer, Ewald
AU - Larsson, Elle
AU - Larsson, Karl-Henrik
AU - Laursen, Gary
AU - Lechat, Christian
AU - Lee, Serena
AU - Lendemer, James C.
AU - Levin, Laura
AU - Lindemann, Uwe
AU - Lindström, Håkan
AU - Liu, Xingzhong
AU - Llarena Hernandez, Regulo Carlos
AU - Llop, Esteve
AU - Locsmándi, Csaba
AU - Lodge, Deborah Jean
AU - Loizides, Michael
AU - Lőkös, László
AU - Luangsa-ard, Jennifer
AU - Lüderitz, Matthias
AU - Lumbsch, Thorsten
AU - Lutz, Matthias
AU - Mahoney, Dan
AU - Malysheva, Ekaterina
AU - Malysheva, Vera
AU - Manimohan, Patinjareveettil
AU - Marin-felix, Yasmina
AU - Marques, Guilhermina
AU - Martínez-gil, Rubén
AU - Marson, Guy
AU - Mata, Gerardo
AU - Matheny, P. Brandon
AU - Mathiassen, Geir Harald
AU - Matočec, Neven
AU - Mayrhofer, Helmut
AU - Mehrabi, Mehdi
AU - Melo, Ireneia
AU - Mešić, Armin
AU - Methven, Andrew S.
AU - Svensson, Sigvard
AU - Thell, Arne
AU - Ekman, Stefan
PY - 2018
Y1 - 2018
N2 - Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physicals objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under theterms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
AB - Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physicals objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under theterms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
KW - IMC11
KW - nomenclature
KW - speciation
KW - taxonomy
KW - typification
KW - voucherless fungi
U2 - 10.5598/imafungus.2018.09.01.10
DO - 10.5598/imafungus.2018.09.01.10
M3 - Article
C2 - 30018877
VL - 9
SP - 167
EP - 175
JO - IMA Fungus
JF - IMA Fungus
SN - 2210-6340
IS - 1
ER -