TY - JOUR
T1 - Determining Rg of IDPs from SAXS Data
AU - Rieloff, Ellen
AU - Skepö, Marie
PY - 2020
Y1 - 2020
N2 - There is a great interest within the research community to understand the structure-function relationship for intrinsically disordered proteins (IDPs); however, the heterogeneous distribution of conformations that IDPs can adopt limits the applicability of conventional structural biology methods. Here, scattering techniques, such as small-angle X-ray scattering, can contribute. In this chapter, we will describe how to make a model-free determination of the radius of gyration by using two different approaches, the Guinier analysis and the pair distance distribution function. The ATSAS package (Franke et al., J Appl Crystallogr 50:1212-1225, 2017) has been used for the evaluation, and throughout the chapter, different examples will be given to illustrate the discussed phenomena, as well as the pros and cons of using the different approaches.
AB - There is a great interest within the research community to understand the structure-function relationship for intrinsically disordered proteins (IDPs); however, the heterogeneous distribution of conformations that IDPs can adopt limits the applicability of conventional structural biology methods. Here, scattering techniques, such as small-angle X-ray scattering, can contribute. In this chapter, we will describe how to make a model-free determination of the radius of gyration by using two different approaches, the Guinier analysis and the pair distance distribution function. The ATSAS package (Franke et al., J Appl Crystallogr 50:1212-1225, 2017) has been used for the evaluation, and throughout the chapter, different examples will be given to illustrate the discussed phenomena, as well as the pros and cons of using the different approaches.
KW - ATSAS
KW - Flexible proteins
KW - GNOM
KW - Guinier
KW - Intrinsically disordered proteins
KW - Pair distance distribution function
KW - PRIMUS
KW - Radius of gyration
KW - Scattering
U2 - 10.1007/978-1-0716-0524-0_13
DO - 10.1007/978-1-0716-0524-0_13
M3 - Article
C2 - 32696362
AN - SCOPUS:85088503301
SN - 1940-6029
VL - 2141
SP - 271
EP - 283
JO - Methods in molecular biology (Clifton, N.J.)
JF - Methods in molecular biology (Clifton, N.J.)
ER -