Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov

Brian I. Choi; Adriana Ene; Jingjie Du; Genevieve Johnson; Catherine Putonti; Christian H. Schouw; Rimtas Dargis; Erik Senneby; Jens J. Christensen; Alan J. Wolfe

doi:10.1099/ijsem.0.006066

Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov

Brian I. Choi, Adriana Ene, Jingjie Du, Genevieve Johnson, Catherine Putonti, Christian H. Schouw, Rimtas Dargis, Erik Senneby, Jens J. Christensen, Alan J. Wolfe

Klinisk mikrobiologi, Malmö

Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift › Peer review

Sammanfattning

Average nucleotide identity analysis, based on whole genome sequences of 115 strains previously identified as Aerococcus urinae, an emerging uropathogen, discriminates at least six unique genomic taxa. The whole genome analysis affords clearer species boundaries over 16S rRNA gene sequencing and traditional phenotypic approaches for the identification and phylogenetic organization of Aerococcus species. The newly described species can be differentiated by matrix-assisted laser desorption ionization time-of-flight analysis of protein signatures. We propose the emendation of the description of A. urinae (type strain ATCC 51268^T = CCUG 34223^T=NCFB 2893) and the names of Aerococcus tenax sp. nov. (ATCC TSD-302^T = DSM 115700^T = CCUG 76531^T=NR-58630^T), Aerococcus mictus sp. nov. (ATCC TSD-301^T = DSM 115699^T = CCUG 76532^T=NR-58629^T), and Aerococcus loyolae sp. nov. (ATCC TSD-300^T = DSM 115698^T = CCUG 76533^T=NR-58628^T) for three of the newly identified genomic taxa.

Originalspråk	engelska
Artikelnummer	006066
Tidskrift	International Journal of Systematic and Evolutionary Microbiology
Volym	73
Nummer	9
DOI	https://doi.org/10.1099/ijsem.0.006066
Status	Published - 2023

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Choi, B. I., Ene, A., Du, J., Johnson, G., Putonti, C., Schouw, C. H., Dargis, R., Senneby, E., Christensen, J. J., & Wolfe, A. J. (2023). Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov. International Journal of Systematic and Evolutionary Microbiology, 73(9), Artikel 006066. https://doi.org/10.1099/ijsem.0.006066

@article{bf05ad0eec324348b2068134bf048410,

title = "Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov",

abstract = "Average nucleotide identity analysis, based on whole genome sequences of 115 strains previously identified as Aerococcus urinae, an emerging uropathogen, discriminates at least six unique genomic taxa. The whole genome analysis affords clearer species boundaries over 16S rRNA gene sequencing and traditional phenotypic approaches for the identification and phylogenetic organization of Aerococcus species. The newly described species can be differentiated by matrix-assisted laser desorption ionization time-of-flight analysis of protein signatures. We propose the emendation of the description of A. urinae (type strain ATCC 51268T = CCUG 34223T=NCFB 2893) and the names of Aerococcus tenax sp. nov. (ATCC TSD-302T = DSM 115700T = CCUG 76531T=NR-58630T), Aerococcus mictus sp. nov. (ATCC TSD-301T = DSM 115699T = CCUG 76532T=NR-58629T), and Aerococcus loyolae sp. nov. (ATCC TSD-300T = DSM 115698T = CCUG 76533T=NR-58628T) for three of the newly identified genomic taxa.",

keywords = "Aerococcus loyolae, Aerococcus mictus, Aerococcus tenax, Aerococcus urinae, MALDI-TOF MS, whole genome sequencing",

author = "Choi, {Brian I.} and Adriana Ene and Jingjie Du and Genevieve Johnson and Catherine Putonti and Schouw, {Christian H.} and Rimtas Dargis and Erik Senneby and Christensen, {Jens J.} and Wolfe, {Alan J.}",

year = "2023",

doi = "10.1099/ijsem.0.006066",

language = "English",

volume = "73",

journal = "International Journal of Systematic and Evolutionary Microbiology",

issn = "1466-5026",

publisher = "Microbiology Society",

number = "9",

}

Choi, BI, Ene, A, Du, J, Johnson, G, Putonti, C, Schouw, CH, Dargis, R, Senneby, E, Christensen, JJ & Wolfe, AJ 2023, 'Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov', International Journal of Systematic and Evolutionary Microbiology, vol. 73, nr. 9, 006066. https://doi.org/10.1099/ijsem.0.006066

Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov. / Choi, Brian I.; Ene, Adriana; Du, Jingjie et al.
I: International Journal of Systematic and Evolutionary Microbiology, Vol. 73, Nr. 9, 006066, 2023.

Forskningsoutput: Tidskriftsbidrag › Artikel i vetenskaplig tidskrift › Peer review

TY - JOUR

T1 - Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov

AU - Choi, Brian I.

AU - Ene, Adriana

AU - Du, Jingjie

AU - Johnson, Genevieve

AU - Putonti, Catherine

AU - Schouw, Christian H.

AU - Dargis, Rimtas

AU - Senneby, Erik

AU - Christensen, Jens J.

AU - Wolfe, Alan J.

PY - 2023

Y1 - 2023

N2 - Average nucleotide identity analysis, based on whole genome sequences of 115 strains previously identified as Aerococcus urinae, an emerging uropathogen, discriminates at least six unique genomic taxa. The whole genome analysis affords clearer species boundaries over 16S rRNA gene sequencing and traditional phenotypic approaches for the identification and phylogenetic organization of Aerococcus species. The newly described species can be differentiated by matrix-assisted laser desorption ionization time-of-flight analysis of protein signatures. We propose the emendation of the description of A. urinae (type strain ATCC 51268T = CCUG 34223T=NCFB 2893) and the names of Aerococcus tenax sp. nov. (ATCC TSD-302T = DSM 115700T = CCUG 76531T=NR-58630T), Aerococcus mictus sp. nov. (ATCC TSD-301T = DSM 115699T = CCUG 76532T=NR-58629T), and Aerococcus loyolae sp. nov. (ATCC TSD-300T = DSM 115698T = CCUG 76533T=NR-58628T) for three of the newly identified genomic taxa.

AB - Average nucleotide identity analysis, based on whole genome sequences of 115 strains previously identified as Aerococcus urinae, an emerging uropathogen, discriminates at least six unique genomic taxa. The whole genome analysis affords clearer species boundaries over 16S rRNA gene sequencing and traditional phenotypic approaches for the identification and phylogenetic organization of Aerococcus species. The newly described species can be differentiated by matrix-assisted laser desorption ionization time-of-flight analysis of protein signatures. We propose the emendation of the description of A. urinae (type strain ATCC 51268T = CCUG 34223T=NCFB 2893) and the names of Aerococcus tenax sp. nov. (ATCC TSD-302T = DSM 115700T = CCUG 76531T=NR-58630T), Aerococcus mictus sp. nov. (ATCC TSD-301T = DSM 115699T = CCUG 76532T=NR-58629T), and Aerococcus loyolae sp. nov. (ATCC TSD-300T = DSM 115698T = CCUG 76533T=NR-58628T) for three of the newly identified genomic taxa.

KW - Aerococcus loyolae

KW - Aerococcus mictus

KW - Aerococcus tenax

KW - Aerococcus urinae

KW - MALDI-TOF MS

KW - whole genome sequencing

U2 - 10.1099/ijsem.0.006066

DO - 10.1099/ijsem.0.006066

M3 - Article

C2 - 37755156

AN - SCOPUS:85172172714

SN - 1466-5026

VL - 73

JO - International Journal of Systematic and Evolutionary Microbiology

JF - International Journal of Systematic and Evolutionary Microbiology

IS - 9

M1 - 006066

ER -

Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov

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